A comparison of depletion versus equalization for reducing high-abundance proteins in human serum

In this work three methods to diminish the content of most highly abundant proteins in human serum have been studied and compared. Protein depletion with ACN or DTT and protein equalization with the ProteoMiner^? (PM) have been assessed by 1‐D gel electrophoresis and MS. After treatment 5, 18 and 9 major proteins within the 20 most abundant proteins in serum were identified for the ACN, DTT and PM methods, respectively. The ACN method was efficient for depleting high molecular weight proteins, over 75 KDa, resulting in 10±4% (n=3) of the total protein content remaining in the depleted serum. In addition, 75% of the proteins belonging to the group of the 20 most abundant proteins were not detected, making this depletion strategy a cheap alternative to expensive commercial tools regularly used for removing high abundance proteins from serum. The ACN extract was found rich in apolipoproteins. The dithithreitol method promotes the precipitation of proteins rich in disulfide bonds, mainly albumin, with 73±7% (n=3) of the total protein content remaining in the depleted serum, which was found rich in immunoglobulins. The PM method compresses the dynamic range of the serum proteins, rendering an extract containing 16±2% (n=3) of the total initial protein content. The extract was found to be rich in both apolipoproteins and immunoglobulins. As a general rule the DTT and PM methods provide a compression of the dynamic range of serum protein concentrations while the ACN method allows an effective depletion of the protein fraction above 72 KDa.     

Extending the GC-SAFT-VR approach to associating functional groups: Alcohols, aldehydes, amines and carboxylic acids

The statistical associating fluid theory is a widely used molecular-based equation of state that has been successfully applied to study a broad range of fluid systems. It provides a framework in which the effects of molecular shape and interactions on the thermodynamics and phase behavior of fluids can be separated and quantified. In the original approach, molecules were modeled as chains composed of identical segments; the heterogeneity of molecules in terms of structure and functional groups was described implicitly through effective parameters. To overcome this limitation, in recent works [Peng et al. Fluid Phase Equilib. 227(2), 131 (2009); Ind. Eng. Chem. Res. 49(3), 1378 (2010)] the GC-SAFT-VR approach has been developed to extend the theory to model chains composed of segments of different size and/or energy of interaction and enable the development of a group-contribution approach within the SAFT-VR framework in which molecular heterogeneity and connectivity is explicitly accounted for. The parameters for several key functional groups (CH₃, CH₂, CH, CH₂CH, CO, C₆H₅, esters, ethers, cis-alkenes and trans-alkenes groups) were determined by fitting to experimental vapor pressure and saturated liquid density data for a number of small molecules containing the functional groups of interest and transferability of the parameters tested by comparing the theoretical predictions with experimental data for pure fluids not included in the fitting process and binary mixtures of both simple fluids and the VLE and LLE of small molecules in polymer systems. In this work, we further extend the applicability of the GC-SAFT-VR approach through the study of the vapor-liquid phase behavior of associating systems, such as linear and branched alcohols, primary and secondary amines, aldehydes, and carboxylic acids, and their mixtures. In the study of these new molecules several new functional groups (OH (linear and branched), HCO, NH₂, NH and COOH) are defined and their molecular parameters characterized. The transferability of the parameters is again tested by comparing the theoretical predictions with experimental data for pure fluids and binary mixtures not included in the fitting process. The GC-SAFT-VR approach is found to predict the phase behavior of the systems studied in most cases in good agreement with experimental data and accurately captures the effects of changes in structure and molecular composition on phase behavior.     

Tuning high aqueous phase uptake in nonionic water-in-oil microemulsions for the synthesis of Mn-Zn ferrite nanoparticles: phase behavior, characterization, and nanoparticle synthesis

In this work, the formation of water-in-oil (w/o) microemulsions with high aqueous phase uptake in a nonionic surfactant system is investigated as potential media for the synthesis of Mn-Zn ferrite nanoparticles. A comprehensive study based on the phase behavior of systems containing precursor salts, on one hand, and precipitating agent, on the other hand, was carried out to identify key regions on (a) pseudoternary phase diagrams at constant temperature (50 °C), and (b) pseudobinary phase diagrams at constant surfactant (S):oil(O) weight ratio (S:O) as a function of temperature. The internal structure and dynamics of microemulsions were studied systematically by conductivity and self-diffusion coefficient determinations (FT PGSE (1)H NMR). It was found that nonpercolated w/o microemulsions could be obtained by appropriate tuning of composition variables and temperature, with aqueous phase concentrations as high as 36 wt % for precursor salts and 25 wt % for precipitating agent systems. Three compositions with three different dynamic behaviors (nonpercolated and percolated w/o, as well as bicontinuous microemulsions) were selected for the synthesis of Mn-Zn ferrites, resulting in nanoparticles with different characteristics. Spinel structure and superparamagnetic behavior were obtained. This study sets firm basis for a systematic study of Mn-Zn ferrite nanoparticle synthesis via different scenarios of microemulsion dynamics, which will contribute to a better understanding on the relationship of the characteristics of the obtained materials with the properties of the reaction media.     

1H NMR and UV-visible data fusion for determining Sudan dyes in culinary spices

Two data fusion strategies (variable and decision level) combined with a multivariate classification approach (Partial Least Squares-Discriminant Analysis, PLS-DA) have been applied to get benefits from the synergistic effect of the information obtained from two spectroscopic techniques: UV-visible and ¹H NMR. Variable level data fusion consists of merging the spectra obtained from each spectroscopic technique in what is called “meta-spectrum” and then applying the classification technique. Decision level data fusion combines the results of individually applying the classification technique in each spectroscopic technique. Among the possible ways of combinations, we have used the fuzzy aggregation connective operators. This procedure has been applied to determine banned dyes (Sudan III and IV) in culinary spices. The results show that data fusion is an effective strategy since the classification results are better than the individual ones: between 80 and 100% for the individual techniques and between 97 and 100% with the two fusion strategies.     

Magnetic exchange interactions and magneto-structural correlations in heterobridged μ-phenoxo-μ(1,1)-azide dinickel(II) compounds: a combined experimental and theoretical exploration

This investigation presents the syntheses, crystal structures, magnetic properties, and density functional theoretical modeling of magnetic behavior of two heterobridged μ-phenoxo-μ(1,1)-azido dinickel(II) compounds [Ni(II)(2)(L(1))(2)(μ(1,1)-N(3))(N(3))(H(2)O)]·CH(3)CH(2)OH (1) and [Ni(II)(2)(L(2))(2)(μ(1,1)-N(3))(CH(3)CN)(H(2)O)](ClO(4))·H(2)O·CH(3)CN (2), where HL(1) and HL(2) are the [1+1] condensation products of 3-methoxysalicylaldehyde and 1-(2-aminoethyl)-piperidine (for HL(1))/4-(2-aminoethyl)-morpholine (for HL(2)), along with density functional theoretical magneto-structural correlations of μ-phenoxo-μ(1,1)-azido dinickel(II) systems. Compounds 1 and 2 crystallize in orthorhombic (space group Pbca) and monoclinic (space group P2(1)/c) systems, respectively. The coordination environments of both metal centers are distorted octahedral. The variable-temperature (2-300 K) magnetic susceptibilities at 0.7 T of both compounds have been measured. The interaction between the metal centers is moderately ferromagnetic; J = 16.6 cm(-1), g = 2.2, and D = -7.3 cm(-1) for 1 and J = 16.92 cm(-1), g = 2.2, and D(Ni1) = D(Ni2) = -6.41 cm(-1) for 2. Broken symmetry density functional calculations of exchange interaction have been performed on complexes 1 and 2 and provide a good numerical estimate of J values (15.8 cm(-1) for 1 and 15.35 cm(-1) for 2) compared to experiments. The role of Ni-N bond length asymmetry on the magnetic coupling has been noted by comparing the structures and J values of complexes 1 and 2 together with previously published dimers 3 (Eur. J. Inorg. Chem. 2009, 4982), 4 (Inorg. Chem. 2004, 43, 2427), and 5 (Dalton Trans. 2008, 6539). Our extensive DFT calculations reveal an important clue to the mechanism of coupling where the orientation of the magnetic orbitals seems to differ with asymmetry in the Ni-N bond lengths. This difference in orientation leads to a large change in the overlap integral between the magnetic orbitals and thus the magnetic coupling. DFT calculations have also been extended to develop several magneto-structural correlations in this type of complexes and the correlation aim to focus on the asymmetry of the Ni-N bond lengths reveal that the asymmetry plays a proactive role in governing the magnitude of the coupling. From a completely symmetric Ni-N bond length, two behaviors have been noted: with a decrease in bond length there is an increase in the ferromagnetic coupling, while an increase in the bond lengths leads to a decrease in ferromagnetic interaction. The later correlation is supported by experiments. The magnetic properties of 1, 2, and three previously reported related compounds have been discussed in light of the structural parameters and also in light of the theoretical correlations determined here.     

RDX geometries, excited states, and revised energy ordering of conformers via MP2 and CCSD(T) methodologies: insights into decomposition mechanism

The geometries, harmonic frequencies, elec-tronic excitation levels, and energetic orderings of various conformers of RDX have been computed at the ab initio MP2 and CCSD(T) levels, providing more reliable results than have been previously obtained. We observe that the various local minimum-energy conformers are all competitive for being the absolute minimum and that, at reasonable temperatures, several conformers will appreciably contribute to the population of RDX. As a result, we have concluded that any mechanistic study to investigate thermal decomposition can reasonably begin from any one of the cyclohexane conformers of RDX. As such, it is necessary to consider the transition states for each RDX conformer to gauge what the activation energy is. Homolytic bond dissociation has long been speculated to be critical to detonation; we report here the most accurate estimates of homolytic BDEs yet calculated, likely to be accurate within 3 kcal mol(-1). The differences in energy for homolytic BDEs among all the possible RDR conformers are again small, such that most all of the conformers can reasonably be speculated as the next step in the mechanism starting from the RDR radical.     

RNAs' uracil quartet model with a non-essential metal ion

We have recently communicated the resemblance of 1-hexyluracil in the crystal state with a lipid bilayer (CrystEngComm, 2010, 12, 362-365). Treatment of this molecule with silver nitrate yields a model, using a non-essential metal ion, of a uracil quartet with geometric parameters comparable to those previously found in RNA strands.     

Study on the thermal behavior of the complexes of the type [PdX<Subscript>2</Subscript>(tdmPz)] (X = Cl<Superscript>−</Superscript>, Br<Superscript>−</Superscript>, I<Superscript>−</Superscript>, SCN<Superscript>−</Superscript>)

Four new mononuclear Pd(II) complexes of the type [PdX₂(tdmPz)] {X = Cl⁻ (1); Br⁻ (2); I⁻ (3); SCN⁻ (4); tdmPz = 1-thiocarbamoyl-3,5-dimethylpyrazole} have been synthesized and characterized by elemental analysis, IR spectroscopy, ¹H and ¹³C{¹H}-NMR experiments. The thermal behavior of the complexes 1–4 has been investigated by means of thermogravimetry (TG) and differential thermal analysis (DTA). From the initial decomposition temperatures, the thermal stability of the complexes can be ordered in the sequence: 3 < 4 ≡ 2 < 1. The final products of the thermal decompositions were characterized as metallic palladium by X-ray powder diffraction.     

Quercetin-PVP K25 solid dispersions

Quercetin is a flavonoid very well studied and has already entered clinical trials emerging as prospective anticancer drug candidate. In addition, quercetin has being reported to its free-radical scavenging activity and suggests potential uses for the prevention and treatment of pathologies as atherosclerosis, chronic inflammation, and others. However, quercetin is sparingly soluble in water, which may be responsible for its limited absorption upon oral administration. The solid dispersion of quercetin with polyvinylpyrrolidone Kollidon^® 25 (PVP K25) suggests an interesting way to increase quercetin solubility, antioxidant activity, and consequently bioavailability. Then, the purpose of this study was to prepare solid dispersions of quercetin with PVP K25 and evaluate their thermal characterization, antioxidant activity and quercetin improvement solubility. For this purpose, quercetin-PVP K25 solutions were dried and quercetin-PVP K25 solids were obtained. The formation of quercetin-PVP K25 solid dispersion was evaluated by solubility studies, powder X-ray diffraction (XRD), fourier transform infrared spectroscopy (FT-IR), differential scanning calorimetry (DSC), thermogravimetry (TG), and antioxidant activity. It was observed that PVP K25 was able to provide quercetin clear aqueous solutions and that quercetin solubility was increased in a PVP K25 concentration dependent manner, improving solubility even 436-fold the pure quercetin. The results obtained with XRD, FT-IR, DSC, and TG demonstrated possible quercetin-PVP K25 solid dispersion formation. Besides, the antioxidant activity of the quercetin-PVP K25 solid dispersions dissolved in aqueous solution and pure quercetin dissolved in methanol showed IC₅₀ value of 0.61 ± 0.03 and 1.00 ± 0.02 μg/mL, respectively, demonstrating that the solid dispersions presented a significant increase in antioxidant activity (P < 0.05). Putting results together, it was possible to conclude there was the formation of quercetin-PVP K25 solid dispersion.