Structure and Polymorphism of M(thd)3 (M = Al,Cr, Mn,Fe, Co,Ga, and In)

Formation, crystal structure, polymorphism, and transition between polymorphs are reported for M(thd)₃, (M = Al, Cr, Mn, Fe, Co, Ga, and In) [(thd)^– = anion of H(thd) = C₁₁H₂₀O₂ = 2, 2, 6, 6‐tetramethylheptane‐3, 5‐dione]. Fresh crystal‐structure data are provided for monoclinic polymorphs of Al(thd)₃, Ga(thd)₃, and In(thd)₃. Apart from adjustment of the M–O_k bond length, the structural characteristics of M(thd)₃ complexes remain essentially unaffected by change of M. Analysis of the M–O_k, O_k–C_k, and C_k–C_k distances support the notion that the M–O_k–C_k–C_k–C_k–O_k– ring forms a heterocyclic unit with σ and π contributions to the bonds. Tentative assessments according to the bond‐valence or bond‐order scheme suggest that the strengths of the σ bonds are approximately equal for the M–O_k, O_k–C_k, and C_k–C_k bonds, whereas the π component of the M–O_k bonds is small compared with those for the O_k–C_k, and C_k–C_k bonds. The contours of a pattern for the occurrence of M(thd)₃ polymorphs suggest that polymorphs with structures of orthorhombic or higher symmetry are favored on crystallization from the vapor phase (viz. sublimation). Monoclinic polymorphs prefer crystallization from solution at temperatures closer to ambient. Each of the M(thd)₃ complexes subject to this study exhibits three or more polymorphs (further variants are likely to emerge consequent on systematic exploration of the crystallization conditions). High‐temperature powder X‐ray diffraction shows that the monoclinic polymorphs convert irreversibly to the corresponding rotational disordered orthorhombic variant above some 100–150 °C (depending on M). The orthorhombic variant is in turn transformed into polymorphs of tetragonal and cubic symmetry before entering the molten state. These findings are discussed in light of the current conceptions of rotational disorder in molecular crystals.     

Artificial Allosteric Receptors

Cooperative effects in the binding of two or more substrates to different binding sites of a receptor that are a result of a conformational change caused by the binding of the first substrate—also referred to as the effector—are called allosteric effects. In biological systems, allosteric regulation is a widely used mechanism to control the function of proteins and enzymes in cellular metabolism. Inspired by this a lot of efforts have been made in supramolecular chemistry to implement this concept into artificial systems to control functions as molecular recognition, signal amplification, or even reactivity and catalysis. This review gives an up‐to‐date overview over the different approaches that have been reported ever since the first examples from the late 1970s/early 1980s. It covers both homo‐ and heterotropic examples and is divided according to the nature of the effector—cationic, anionic, or neutral—effectors and systems that use combinations of those.     

Syntheses of nucleosides with 2′-spirolactam and 2′-spiropyrrolidine moieties as potential inhibitors of hepatitis C virus NS5B polymerase

To discover novel nucleosides as potential antiviral agents, 2′-spirolactam and 2′-spiropyrrolidine-containing nucleoside analogs were envisioned. Efficient synthetic routes were developed with an epoxide opening as the key step to establish the quaternary center at the 2′ position, leading to the design and synthesis of uridine analogs 8 and 21, prodrugs 13–16, and cytidine analog 11.     

Syntheses of 4′-spirocyclic phosphono-nucleosides as potential inhibitors of hepatitis C virus NS5B polymerase

To discover novel nucleosides as potential antiviral agents, 4′-spirocyclic phosphono-nucleosides were designed to mimic the monophosphate of R-1479, a known nucleoside inhibitor of HCV NS5B. Bypassing the first kinase step to nucleoside monophosphate is viewed as advantageous since this phosphorylation is often observed as the rate-limiting transformation to the active NTP for many nucleosides. Efficient synthetic routes were developed with a triphenylphosphine–iodine cyclization reaction as the key step to form the tetrahydrofuran 4′-spirocycle. The desired 4′-spirocyclic phosphono-cytidine analogs 12a, 12b, and 16 were prepared in 11 steps.     

Similarities and Differences of Low Salinity Polymer and Low Salinity LPS (Linked Polymer Solutions) for Enhanced Oil Recovery

Linked polymer solution (LPS) is nano-size particles made of hydrolyzed polyacrylamide (HPAM) cross-linked with aluminum citrate. The propagation of LPS has been compared to non-cross-linked polymers at low brine salinity condition. The possible differences in properties and potentials for oil recovery have been investigated using water-wet and intermediate-wet cores. The target oil for polymer flooding (PF) is assumed to be the portion of the reservoir that has been bypassed by water during waterflooding and not the residual oil saturation in flooded zones. Our recent studies have shown that a positive synergy can be obtained by combining low salinity and PF. It has been claimed in the literature that cross-linking polymer such as colloidal dispersion gels (colloidal dispersion gels (CDG), micron-size aggregates) or LPS (nano-size particles) would extend the application of polymers to also include change in residual oil saturation. The results of this study indicated higher pressure buildup when low salinity LPS was propagated through brine saturated cores compared to low salinity polymer solution. The pressure buildup was even stronger for high salinity LPS injection. In two phase flow experiments, both polymer and LPS under low salinity condition, showed approximately similar propagation and oil recovery potential when injected into water-wet and intermediate-wet cores.     

Salinity Selection for a Low Salinity Water-Low Salinity Surfactant Process

A laboratory selection of salinity for a low salinity water-low salinity surfactant (LS-LSS) process is presented in this paper with systematical investigation on surfactant phase behavior, interfacial tension (IFT), and dynamic retention in porous media with IOS2024 and isoamyl alcohol (IAA) as surfactant system. The results show that 0.4 wt% IOS2024 with 1 wt% IAA can provide ultra-low IFT of 10^?3 mN/m at around 3000–4000 mg/L total dissolved solids, but at that salinity range the surfactant retention is very high. The search for an optimum surfactant formulation has to consider solution properties and retention in addition to the low IFT. The salinity for a LS-LSS process should thus not be focused on either optimal salinity or ultra-low IFT, but instead the best choice could be a compromise between the properties in question. The three-phase region, where ultra-low IFT are found, is also associated with high retention values. However, we show that as salinity is increased from a two-phase region with oil solubilized in a water continuous microemulsion, there is a region close to the three-phase boundary which has potential. This region does not give ultra-low, but fairly low (10^?2 mN/m in this case) interfacial tensions, and also significantly lower retention.      

Discovery and validation of urinary exposure markers for different plant foods by untargeted metabolomics

While metabolomics is increasingly used to investigate the food metabolome and identify new markers of food exposure, limited attention has been given to the validation of such markers. The main objectives of the present study were to (1) discover potential food exposure markers (PEMs) for a range of plant foods in a study setting with a mixed dietary background and (2) validate PEMs found in a previous meal study. Three-day weighed dietary records and 24-h urine samples were collected three times during a 6-month parallel intervention study from 107 subjects randomized to two distinct dietary patterns. An untargeted UPLC-qTOF-MS metabolomics analysis was performed on the urine samples, and all features detected underwent strict data analyses, including an iterative paired t test and sensitivity and specificity analyses for foods. A total of 22 unique PEMs were identified that covered 7 out of 40 investigated food groups (strawberry, cabbages, beetroot, walnut, citrus, green beans and chocolate). The PEMs reflected foods with a distinct composition rather than foods eaten more frequently or in larger amounts. We found that 23 % of the PEMs found in a previous meal study were also valid in the present intervention study. The study demonstrates that it is possible to discover and validate PEMs for several foods and food classes in an intervention study with a mixed dietary background, despite the large variability in such a dataset. Final validation of PEMs for intake of foods should be performed by quantitative analysis.

Investigating Membrane-Mediated Antimicrobial Peptide Interactions with Synchrotron Radiation Far-Infrared Spectroscopy

Synchrotron radiation-based Fourier transform infrared spectroscopy enables access to vibrational information from mid over far infrared to even terahertz domains. This information may prove critical for the elucidation of fundamental bio-molecular phenomena including folding-mediated innate host defence mechanisms. Antimicrobial peptides (AMPs) represent one of such phenomena. These are major effector molecules of the innate immune system, which favour attack on microbial membranes. AMPs recognise and bind to the membranes whereupon they assemble into pores or channels destabilising the membranes leading to cell death. However, specific molecular interactions responsible for antimicrobial activities have yet to be fully understood. Herein we probe such interactions by assessing molecular specific variations in the near-THz 400–40 cm⁻¹ range for defined helical AMP templates in reconstituted phospholipid membranes. In particular, we show that a temperature-dependent spectroscopic analysis, supported by 2D correlative tools, provides direct evidence for the membrane-induced and folding-mediated activity of AMPs. The far-FTIR study offers a direct and information-rich probe of membrane-related antimicrobial interactions.     

Comparative 11A structure of two molluscan hemocyanins from 3D cryo-electron microscopy

Hemocyanins are giant extracellular proteins that transport oxygen in the hemolymph of many molluscs. Molluscan hemocyanins are cylindrical decamers or didecamers of a 350-400 kDa subunit that contains seven or eight different covalently linked globular functional units (FUs), arranged in a linear manner. Each FU carries a single copper active site and reversibly binds one dioxygen molecule. As a consequence, the decamer can carry up to 70 or 80 O(2) molecules. Although complete sequence information is now available from several molluscan hemocyanins, many details of the quaternary structure are still unclear, including the topology of the 10 subunits within the decamer. Here we show 3D reconstructions from cryo-electron micrographs of the hemocyanin decamer of Nautilus pompilius (Cephalopoda) and Haliotis tuberculata (Gastropoda) at a resolution of 11A (FSC(1/2-bit) criterion). The wall structure of both hemocyanins is very similar and shows, as in previous reconstructions, three tiers with 20 functional units each that encircle the cylinder wall, and the 10 oblique minor and major wall grooves. However, the six types of wall FUs of the polypeptide subunit, termed a-b-c-d-e-f, are now for the first time individually discernable by their specific orientation, shape, and connections. Also, the internal collar complex of the decamers shows superior resolution which, in this case, reveals striking differences between the two hemocyanins. The five arcs (FU-g pairs) of the central collar (in both hemocyanins) and the five slabs (FU-h pairs) of the peripheral collar (only present in Haliotis hemocyanin), as well as their connections to the wall and to each other are now more clearly defined. The arc is attached to the wall through a feature termed the anchor, a previously undescribed structural element of the hemocyanin wall.