Characterization of peptide adsorption on InAs using X-ray photoelectron spectroscopy

The well-defined structure and high stability of peptides make them attractive biotemplates for low-temperature synthesis of semiconductor nanocrystals. Adsorbed peptide monolayers could also potentially passivate semiconductors by preventing regrowth of the oxide layer. In this work, the adsorption and passivation capabilities of different collagen-binding peptides on InAs surfaces were analyzed by X-ray photoelectron spectroscopy (XPS). Before peptide functionalization, Br(2)- and HCl-based etches were used to remove the native oxide layer on the InAs surfaces. The presence of the N 1s peak for peptide-functionalized samples confirms the adsorption of peptides onto the etched InAs surfaces. Calculated coverages were similar for all peptide sequences and ranged from ～20 to 40% of a monolayer using the deconvoluted C 1s spectra and from ～2 to 5% for the N 1s spectra. The passivation ability of the peptides was analyzed by comparing the ratios of the oxide components to the nonoxide components in the XPS spectra. The thickness of the oxide layer was also approximated by accounting for the attenuation of the substrate photoelectrons through the oxide layer. We find that the oxide layer regrowth still occurs after peptide functionalization. However, the oxide layer thicknesses for peptide-functionalized samples do not reach as received levels, indicating that the peptides do have some passivation ability on InAs.     

The Influence of Nd and Sm on the Structure and Properties of Sol-Gel-Derived TiO2 Powders

TiO₂ nanopowders modified by Nd and Sm were prepared using the sol-gel technique. It was found by XRD analysis that the samples containing Sm are amorphous up to 300 °C, while those with Nd preserve a mixed organic-inorganic amorphous structure at higher temperatures (400 °C). The TiO₂ (rutile) was not detected up to 700 °C in the presence of both modified oxides. TiO₂ (anatase) crystals found at about 400 °C in the Sm-modified sample exhibited an average crystallite size of about 25–30 nm, while doping with Nd resulted in particles of a lower size—5–10 nm. It was established by DTA that organic decomposition is accompanied by significant weight loss occurring in the temperature range 240–350 °C. Photocatalytic tests showed that the samples heated at 500 °C possess photocatalytic activity under UV irradiation toward Malachite green organic dye. Selected compositions exhibited good antimicrobial activity against E. coli K12 and B. subtilis.     

Phase transitions in phosphatidylcholine foam bilayers

Foam bilayers from individual and mixed phosphatidylcholines are experimentally studied at different temperatures. Occurrence of a chain-melting phase transition in the foam bilayers is detected by two independent parameters—the critical concentrationC _c for formation of foam bilayer and the foam bilayer thickness. The data forC _c are discussed on the basis of the hole-nucleation theory, which applies the Ising model to foam bilayers and uses the mean-field approximation for interpretation of their stability. This allows the determination of the binding energy of a phospholipid molecule in gel and liquid-crystalline foam bilayers. New possibilities to relate the microscopic and macroscopic characteristics of foam bilayers are demonstrated.     

Combined solid-phase extraction and 2D LC–MS for characterization of the neuropeptides in rat-brain tissue

A comprehensive two-dimensional capillary liquid chromatographic (2D LC) method has been established for determination of neuropeptides in rat brain tissue. Rats were exposed to different levels of stress before sacrificing and the aim of this study was to design a powerful separation and detection technique capable of characterizing differences between cerebral neuropeptide expression as a function of stress level. Rat brain samples were homogenized and subjected to clean-up by solid-phase extraction (SPE) on both a reversed-phase (C₁₈) and a weak cation-exchange (CBA) cartridge. The samples were divided in two fractions (A and B) depending on retention on the CBA column. Subsequently, 50 L of the sample were injected on to a strong cation exchanger (SCX) at a mobile phase pH of 3, which enabled preconcentration of positively charged compounds. The trapped compounds were eluted using step gradients of ammonium formate in water–ACN (90:10, v/v). Before enrichment in the second dimension, the eluate from the first dimension was diluted with water containing 0.1% TFA. The compounds eluting from the first dimension were trapped in the second dimension using a dual precolumn system consisting of two short capillary columns packed with Kromasil C₁₈, 10 m particles. Subsequently, the trapped compounds were backflushed on to a 10 cm long, 320 m I.D. analytical column packed with Kromasil C₁₈ 3.5 m particles, on which they were efficiently separated. Detection was performed using an ion-trap mass spectrometer (ITMS) in both the MS and the MS–MS mode. Comparison of base-peak chromatograms (BPC) from MS analysis of stressed and non-stressed rats clearly revealed several differences in neuropeptide expression. The MS–MS data obtained combined with Mascot software were employed for peptide identification.     

Determination and removal of impurities in 2-D LC-MS of peptides

Problems occurring during operation of a 2-D LC-MS system for separation and identification of neuropeptides, such as contamination of the used salts and column bleed, are described. When using polysulfoethyl aspartamide, which is widely used as a strong cation exchange stationary phase in the first dimension, interfering peaks were observed in the second-dimension reversed-phase chromatograms. The observed peaks, found to be caused by column bleeding, had abundance above the threshold value and influenced the quality of the analyses. The origin of the peaks was verified and appropriate measures are proposed. Additionally, peaks caused by polyethylene glycols (PEGs), covering approximately 5 min of feasible chromatographic time in every fraction, were observed. The commercial ammonium formate salts used to prepare the first-dimension mobile phase were found to contain PEG impurities, and in subsequent work the salt solutions were prepared from formic acid and ammonia to avoid any additional contaminations.     

Characterization of collagen fibers in Bruch’s membrane using chemical force microscopy

Bruch’s membrane is a layer composed of collagen fibers located just beneath the retina. This study validates a strategy used to map the morphological and adhesion characteristics of collagen fibers in Bruch’s membrane. Atomic force microscopy tips were functionalized with different chemical groups and used to map the hydrophilic and hydrophobic regions on the surface of the eye tissue. The largest adhesion forces were observed when tips functionalized with NH₂ groups were used. The trend in the adhesion forces was rationalized based on the distribution of different functional groups in the triple-helical structure of the collagen fibers. The results of this study can be used to design more effective strategies to treat eye diseases such as age-related macular degeneration.     

Fabrication of ordered metallic and magnetic heterostructured DNA-Nanoparticle hybrids

Here we provide a method based on enzymatically catalyzed reactions to cleave and ligate DNA molecules coated with nanoparticles to fabricate multi-component structures. This is done by simultaneously digesting two solutions of nanoparticle coated DNA, one with iron oxide particles the other gold particles, which yields short DNA fragments with complementary single stranded overhangs. When added together and re-attached using ligase enzymes multi-component nanoparticle coated structures are formed providing a novel method to fabricate complicated nanoparticle arrangements from the bottom up. We evaluated the fabrication by characterizing the samples with gel electrophoresis and magnetic force microscopy (MFM). The electrophoresis provides proof that the coated DNA molecules were digested with restriction enzymes and ligated by the T4 ligase enzymes. MFM experiments allow us to visualize the multi-component strands and analyze the magnetic versus metallic segments.     

Validation of mercury determination by solid sampling Zeeman atomic absorption spectrometry and a specially designed furnace

Certified reference materials (CRMs) of different origin were used to validate the direct determination of total mercury by solid sampling Zeeman atomic absorption spectrometry (SS-ZAAS) and a specially designed furnace. The temperature program provides only for one step. Atomisation of mercury and pyrolysis of the matrix is performed at a constant temperature in the range of 900–1000 °C. Calibration points achieved by CRMs and aqueous solutions are covered by one calibration line, indicating the absence of matrix effects. Relatively high amounts of chlorine, known for causing problems in mercury determination do not influence analytical results. The excellent accuracy of the method results in a very good agreement with the certified values. The precision of SS-ZAAS measurements in a range from 0.5 to 50 ng Hg does not exceed 3% R.S.D. A limit of quantification of 0.008 μg g⁻¹ Hg was achieved.     

Determination of impurities for controllable growth of high quality optical fluorite

Natural fluorite is used for growing CaF₂ boules from melt by an improved technique. Chemical treatment of the starting ore decomposes the accessory minerals, thus producing small amounts of the oxides of Si, Al, and Fe insoluble in the melt, whereas the overall content of rare earth elements (REEs) of hundreds of μg g⁻¹, remains unchanged. Analytical techniques and optical measurements provide for assessing the concentration range and trends in the distribution of residual metal impurities along the height of the boules. Solid sampling electrothermal atomic absorption spectrometry (SS-ETAAS) gives good reproducibility for impurities’ distribution within a large concentration range of 0.1–10 μg g⁻¹. The concentrations of Zn and Cu determined were found to vary within the lowest tenths of μg g⁻¹ range in the starting portions of chemically treated fluorspar and a batch of boules produced subsequently. The concentrations of both elements show a decreasing trend towards the top section within the confidential interval, the width of which confirms the definite in homogeneities in their distribution at those concentration levels. The Fe occurs in the boules below the detection limit, while the content of lead diminishes rapidly towards their upper section, probably due to a shorter path in the liquid phase before any vapour phase transition proceeds. A satisfactory correlation is found between the Pb concentration in ng g⁻¹-range and light-absorption peak intensity at 204 nm, the precise determination of which is impeded due to the overlapping bands and the light-scattering effect. Reliable determination of impurities enables optimisation of the basic purification — growing stages for the production of high grade crystals.