Exciplex fluorescence emission from simple organic intramolecular constructs in non-polar and highly polar media as model systems for DNA-assembled exciplex detectors

Organic intramolecular exciplexes, N-(4-dimethylaminobenzyl)-N-(1-pyrenemethyl)amine (1) and N'-4-dimethylaminonaphthyl-N-(1-pyrenemethyl)amine (2), were used as model systems to reveal major factors affecting their exciplex fluorescence, and thus lay the basis for developing emissive target-assembled exciplexes for DNA-mounted systems in solution. These models with an aromatic pyrenyl hydrocarbon moiety as an electron acceptor appropriately connected to an aromatic dimethylamino electron donor component (N,N-dimethylaminophenyl or N,N-dimethylaminonaphthyl) showed strong intramolecular exciplex emission in both non-polar and highly polar solvents. The effect of dielectric constant on the maximum wavelength for exciplex emission was studied, and emission was observed for 1 and 2 over the full range of solvent from non-polar hydrocarbons up to N-methylformamide with a dielectric constant of 182. Quantum yields were determined for these intramolecular exciplexes in a range of solvents relative to that for Hoechst 33,258. Conformational analysis of 1 was performed both computationally and via qualitative 2D NMR using (1)H-NOESY experiments. The results obtained indicated the contribution of pre-folded conformation(s) to the ground state of 1 conducive to exciplex emission. This research provides the initial background for design of self-assembled, DNA-mounted exciplexes and underpins further development of exciplex-based hybridisation bioassays.     

THE 3-METHYLINDOLE/n-BUTANOL EXCIPLEXES: EVIDENCE FOR TWO EXCIPLEX SITES IN INDOLE COMPOUNDS

Abstract— The 1-butanol concentration dependence of fluorescence emission intensities and spectra from 3-methylindole/1-butanol exciplexes in 1-heptane reveals a 1:1 stoichimetry near the isoemissive point increasing to 1:2 at higher concentrations. The large increase in stability of the 1:1 complex relative to indole itself is attributed to its relatively low dissociation rate with an activation energy of 36.8 kJ/mol. Each step of exciplex formation shifts the emission maximum about 15 nm to the red. The stronger combining site is the negative C-3. The weaker site is the positive N-1. Stabilization due to charge transfer between excited indole and electrophilic or nucleophilic partners is small relative to dipole-dipole interactions. There is no indication of significant orbital-overlap. The detection of both positive and negative centers for exciplex formation on indole, 1-methyl indole and electronically similar derivatives resolves some long-standing problems and extends the basis of knowledge necessary to use tryptophanyl-residue fluorescence as a quantitative probe for protein conformational character and its changes.     

Lifetimes of partial charge transfer exciplexes of 9-cyanophenanthrene and 9-cyanoanthracene

The fluorescence decays of several exciplexes with partial charge transfer have been investigated in solvents of various polarity. The measured lifetimes are found to be in reasonable agreement with the activation enthalpy and entropy of exciplex decay obtained earlier from the temperature dependence of the exciplex emission quantum yields. For exciplexes with 9-cyanophenanthrene substantial contribution of the higher local excited state into the exciplex electronic structure is found and borrowed intensity effect enhances the exciplex emission rate constants.     

Twin probes as a novel tool for the detection of single-nucleotide polymorphisms

Single-nucleotide polymorphisms (SNPs) are the most common form of DNA sequence variation. There is a strong interest from both academy and industry to develop rapid, sensitive and cost effective methods for SNP detection. Here we report a novel structural concept for DNA detection based on fluorescence dequenching upon hybridization. The so-called "twin probe" consists of a central fluorene derivative as fluorophore to which two identical oligonucleotides are covalently attached. This probe architecture is applied in homogeneous hybridization assays with subsequent fluorescence spectroscopic analysis. The bioorganic hybrid structure is well suited for sequence specific DNA detection and even SNPs are identified with high efficiency. Additionally, the photophysical properties of the twin probe were investigated. The covalent attachment of two single stranded oligonucleotides leads to strong quenching of the central fluorescence dye induced by the nucleobases. The twin probe is characterized by supramolecular aggregate formation accompanied by red-shifted emission and broad fluorescence spectra.     

Emission from aromatic hydrocarbon-diene and -olefin exciplexes

Luminescence from aromatic hydrocarbon-olefin and -diene exciplexes, providing strong evidence for their intermediary in singlet quenching processes, is reported. Solvent dependence of the emission maximum gives a value of 10.8D for the dipole moment of the 1-cyanonaphthalene-1,2-dimethylcyclopentene exciplex while the temperature dependence affords a value of 6.7 kcal/M for the heat of formation. Linear-free-energy correlations of rate constants for 1-cyanonaphthalene and naphthalene fluorescence quenching by dienes and olefins and strained hydrocarbons with the adiabatic ionization potentials of the quenchers are consistent with major contributions from charge-resonance in the exciplex formation process.     

Dendrimers as ligands. Formation of a 2:1 luminescent complex between a dendrimer with a 1,4,8,11-tetraazacyclotetradecane (cyclam) core and Zn2+

We have investigated the formation of metal complexes between Zn2+ and two derivatives, 1 and 2, of the well-known 1,4,8,11-tetraazacyclotetradecane (cyclam) ligand. Compound 1 is 1,4,8,11-tetrakis(naphthylmethyl) cyclam, and compound 2 is a dendrimer consisting of a cyclam core with appended 12 dimethoxybenzene and 16 naphthyl units. Compound 1 exhibits an emission band with a maximum around 480 nm, assigned to the formation of exciplexes between amine and excited naphthyl units. Dendrimer 2 exhibits three types of weak emission bands, assigned to naphthyl localized excited states (lambdamax = 337 nm), naphthyl excimers (lambdamax ca. 390 nm), and naphthyl-amine exciplexes (lambdamax = 480 nm). In CH3CN-CH2Cl2 1:1 v/v, titration of ligand 1 with Zn2+ causes the disappearance of the exciplex emission and the appearance of a strong naphthyl localized fluorescence; the titration plot is linear and reaches a plateau for a 1:1 stoichiometry, showing that a highly stable [Zn(1)]2+ complex is formed. In the case of 2, titration with Zn2+ causes the disappearance of the exciplex band, with a concomitant increase in the excimer and naphthyl localized emissions; the titration plot is again linear, but in this case it reaches a plateau for a 2:1 stoichiometric ratio, showing the unexpected formation of a [Zn(2)2]2+ complex. Such an unexpected stoichiometry for the complex of the dendritic ligand has been fully confirmed by 1H NMR titrations. The results obtained show that the dendrimer branches not only do not hinder, but in fact favor coordination of cyclam to Zn2+.     

Temperature effect on the vapor-phase exciplexes of cyano-substituted anthracenes

The emission spectra and lifetimes of the vapor-phase exciplexes of four cyano-substituted anthracenes with N,N-dimethylaniline (DMA) as a donor are examined over a wide temperature range. The activation energies associated with the exciplex dissociation are calculated to be of the order of 10 kcal/mol. The entropy change in forming the exciplexes is discussed in relation to the efficiency of the exciplex formation. For various donors other than DMA, preliminary results on how they interact with excited 9,10-dicyanoanthracene are also given.     

Exciplexes of pyrene with indole and diethylaniline in liposomes and biomembranes

The formation of exciplexes of pyrene with indole and diethylaniline incorporated into the lipid bilayer was observed in phospholipid liposomes and membranes of sarcoplasmic reticulum from rabbit muscles. The intensity and lifetime of pyrene luminescence were found to decrease and the structureless emission of the exciplexes appeared. Exciplex emission in the membrane has a low quantum yield (compared with exciplexes formed in hexane solutions). This is probably due to the presence of polar groups in the membranes. It was shown that the formation of exciplexes is markedly dependent on the physical state of membranes. It is suggested also that pyrene can form an exciplex with tryptophan residues of membrane proteins.     

Salt-induced Charge Separation in Photoinduced Electron Transfer Reactions. The Effect of Ion Size*

The effect of added salts on the efficiency for photoinduced charge separation in two typical electron acceptor (A)/electron donor (D) systems was studied by the technique of laser flash photolysis. We investigate the exciplex-forming pyrene/p-dicyanobenzene (Py/DCB) and pyrene/N,N-dimethylaniline (Py/DMA) systems in ethyl acetate. The salts selected for this study are tetrabutylammonium chloride, tetrahexylammonium chloride, lithium perchlorate, sodium perchlorate, tetrabutylammonium perchlorate, sodium tetraphenylborate and tetrabutylammonium tetraphenyl-borate. In most cases, the salts quench the emission of the exciplexes with rate constants near the diffusional rate limit in ethyl acetate. An apparent red shift of the fluorescence maximum of the exciplexes with increasing salt concentration is also generally observed. Laser flash photolysis experiments showed that in the absence of the salts both A/D systems yield exclusively the triplet excited state of the polyaromatic. However, in the presence of many of the electrolytes studied, induced free radical ion formation is observed. The experimental efficiencies for induced charge separation (n) depend on the A/D system and on the nature of the salt. The measured n values vary between 0 and 0.5. The most striking variation corresponds to the lithium and sodium perchlorates. These salts are almost totally inefficient in quenching the Py/DCB exciplex, while they quench and induce charge separation from the Py/DMA exciplex with a high yield. The effect of the different salts on both exciplexes may be rationalized by using the concept of the soft/hard character of the interacting ions.     

Exciplex luminescence studies of the surface polarity of end-capped bonded phases

The fluorescence intensities and emission maxima of surface-bound exciplexes were studied to determine the relative polarity of microparticulate silica before and after derivatization with trimethylchlorosilane (TMCS) and hexamethyldisilazane (HMDS). The results indicate that HMDS yields a bonded phase with greater average polarity relative to TMCS at equivalent surface coverages. This difference is attributed to the formation of basic sites on the surface by chemisorption of ammonia generated during derivatization with HMDS. The observation of exciplex emission on silica gel is novel and strongly supports clustering of surface-bound molecules into high-density regions.     

双-β-萘甲基二胺及其衍生物的荧光光谱及分子内激发态复合物的形成

我们合成了N,N'-二甲基-二-β-萘甲基乙二胺(Ⅰ),N,N'-二甲基-二-β-萘甲基丙二胺(Ⅱ),N,N'-二-β-萘甲基哌嗪(Ⅲ)三个化合物,并测定了它们的荧光光谱。结果表明,它们既能形成分子内激基缔合物(excimer),又能形成分子内激基复合物(exciplex),与溶剂极性有关。在极性较大的溶剂如乙腈和甲醇中,由于激基复合物几乎完全解离因而不发射荧光,这时观察到的荧光峰蓝移而且强度增加,可以认为,这是激基缔合物存在的证明。这三个化合物的分子内激基缔合物形成的难易程度按Ⅱ>Ⅰ>Ⅲ的次序依次递降。     

Excited-state interactions in flurbiprofen-tryptophan dyads

Fluorescence and laser-flash photolysis measurements have been performed on two pairs of diastereomeric dyads that contain the nonsteroidal anti-inflammatory drug (S)- or (R)-flurbiprofen (FBP) and (S)-tryptophan (Trp), which is a relevant amino acid present in site I of human serum albumin. The fluorescence spectra were obtained when subjected to excitation at 266 nm, where approximately 60% of the light is absorbed by FBP and approximately 40% is absorbed by Trp; the most remarkable feature observed in all dyads was a dramatic fluorescence quenching, and the residual emission was assigned to the Trp chromophore. In addition, an exciplex emission was observed as a broad band between 380 and 500 nm, especially in the case of the (R,S) diastereomers. The fluorescence lifetimes (tauF) at lambdaem=340 nm were clearly shorter in the dyads than in Trp-derived model compounds; in contrast, the values of tauF at lambdaem=440 nm (exciplex) were much longer. On the other hand, the typical FBP triplet-triplet transient absorption spectrum was obtained when subjected to laser-flash photolysis, although the signals were less intense than when FBP was directly excited under the same conditions. The main photophysical events in FBP-Trp dyads can be summarized as follows: (1) most of the energy provided by the incident radiation at 266 nm reaches the excited singlet state of Trp (1Trp*), either via direct absorption by this chromophore or by singlet singlet energy transfer from excited FBP (1FBP*); (2) a minor, yet stereoselective deactivation of 1FBP* leads to detectable exciplexes and/or radical ion pairs; (3) the main process observed is intramolecular 1Trp* quenching; and (4) the first triplet excited-state of FBP can be populated by triplet-triplet energy transfer from excited Trp or by back-electron transfer within the charge-separated states.     

Magnetic field effect on fluorescence in a mixture of N-ethylcarbazole and dimethyl terephthalate in a polymer film in the presence of electric fields

Magnetic field effects on the fluorescence spectrum and on the electrofluorescence spectrum (plots of the electric field-induced change in fluorescence intensity as a function of wavelength) have been examined in electron donor and acceptor pairs of N-ethylcarbazole (ECZ) and dimethyl terephthalate (DMTP) in polymer films at different ratios of donor/acceptor concentration. In the mixture having a high concentration of ECZ, electric field-induced quenching of the exciplex fluorescence originating from the photoinduced electron transfer becomes less efficient in the presence of a magnetic field. In the mixture having a low concentration of ECZ, on the other hand, no magnetic field effect was observed in the electrofluorescence spectrum, indicating that the hole carrier plays an important role in synergy effects of magnetic and electric field effects on exciplex fluorescence. In the absence of the applied electric field, the magnetic field does not affect either exciplex fluorescence with a peak at 450 nm or LE fluorescence emitted from the locally excited state of ECZ but enhances the broad emission with a peak at approximately 380 nm, probably assigned to the fluorescence of another type of exciplex between ECZ and DMTP. Thus, two kinds of magnetic field effects on fluorescence have been observed in a mixture of ECZ and DMTP in a polymer film.     

Bonded exciplex formation: electronic and stereoelectronic effects

As recently proposed, the singlet-excited states of several cyanoaromatics react with pyridine via bonded-exciplex formation, a novel concept in photochemical charge transfer reactions. Presented here are electronic and steric effects on the quenching rate constants, which provide valuable support for the model. Additionally, excited-state quenching in poly(vinylpyridine) is strongly inhibited both relative to that in neat pyridine and also to conventional exciplex formation in polymers, consistent with a restrictive orientational requirement for the formation of bonded exciplexes. Examples of competing reactions to form both conventional and bonded exciplexes are presented, which illustrate the delicate balance between these two processes when their reaction energetics are similar. Experimental and computational evidence is provided for the formation of a bonded exciplex in the reaction of the singlet excited state of 2,6,9,10-tetracyanoanthracene (TCA) with an oxygen-substituted donor, dioxane, thus expanding the scope of bonded exciplexes.     

Electronic relaxation of molecular exciplexes in the vapor phase

Interaction of electronically excited TCNB (tetracyanobenzone) and ground-state MB (methylated benzenes) leads to the formation of fluorescent exciplexes in the vapor phase. Studies of exciplex fluorescence as a function of excess vibrational energy in TCNB and of temperature and pressure of added buffer gas, lead to the conclusion that the low-frequency inter-molecular vibrations play a very important role in the radiationless deactivation of exciplexes. The results also indicate that collisional relaxation of low-frequency intermolecular vibrations proceeds much more rapidly than that of high-frequency intramolecular vibrations.     

Exciplex fluorescence as a diagnostic probe of structure in coordination polymers of Zn2+ and 4,4'-bipyridine containing intercalated pyrene and enclathrated aromatic solvent guests

Coordination polymers based on Zn(II)-4,4'-bipyridine (Zn-bipy) frameworks containing pyrene intercalated between adjacent layers and aromatic solvent molecules enclathrated within the framework cavities have been prepared and characterized for the first time. These compounds are highly fluorescent, and show broad, featureless emission spectra significantly red-shifted relative to pyrene monomer fluorescence; this has been assigned to pyrene-bipy exciplex emission. Single-crystal X-ray structural analysis shows that the presence of the aromatic solvent molecule within the cavities has a profound effect on the architecture of these frameworks: in the case of benzene, toluene, p-xylene, and chlorobenzene, the Zn-bipy framework consists of 1-D ladders, whereas in the case of o-dichlorobenzene (the largest solvent guest), the framework was based on a 2-D square grid. This difference in stoichiometry and architecture was also reflected in significant differences in the fluorescence of these coordination polymers, with three of the four compounds with 1-D ladder geometries having similar fluorescence maxima (ca. 520 nm) and lifetimes (ca. 70 ns), whereas the compound with square grid topology had a significantly blue-shifted maximum (ca. 460 nm) and shorter lifetime (ca. 42 ns). It is proposed that exciplexes form upon excitation of ground-state complexes, involving face-to-face bipy/pyrene complexes (pi-pi stacking interactions) in the case of the 1-D ladder structures, but edge-to-face bipy/pyrene and pyrene/o-dichlorobenzene complexes (C-H...pi interactions) in the case of the 2-D square grid structure.     

Synthesis and fluorescence study of 7-azaindole in DNA oligonucleotides replacing a purine base

The fluorescence spectroscopy of 7-azaindole (7aIn) incorporated in DNA oligonucleotides is investigated. Incorporation of 7aIn into DNA oligonucleotides is accomplished through standard solid-phase phosphoramidite chemistry. Fluorescence emission of the 7aIn chromophore shifts slightly to the red (from 386 nm to 388 nm) upon glycosylation at the N-1 position, but its relative fluorescence quantum yield increases 23 times, from 0.023 to 0.53. Upon incorporation into DNA, the fluorescence emission of 7aIn is greatly quenched with fluorescence quantum yields of 0.020 and 0.016 in single and double strand DNA, respectively. The fluorescence emission for 7aIn in DNA oligonucleotides shifts to the blue with an emission maximum at 379 nm. Both the strong fluorescence quenching and the blue shift of the emission spectrum signify that 7aIn is stacked with neighboring DNA bases in both single and double strand DNA. As the duplex DNA melts due to temperature increase, the fluorescence of the 7aIn chromophore increases, indicating the transition from the less fluorescent duplex DNA to the more fluorescent single strand DNA. Since this fluorescent 7aIn is a structural analog of purine, its fluorescence property may be utilized as a probe for studying nucleic acid structure and dynamics.     

Temperature-dependent magnetic field effect study on exciplex luminescence: probing the triton X-100 reverse micelle in cyclohexane

The microenvironment within the reverse micelle of the nonionic surfactant Triton X-100 (TX-100) in cyclohexane has been investigated by studying the magnetic field effect (MFE) on pyrene-dimethylaniline exciplex luminescence. The nature of exciplex fluorescence and its behavior in the presence of a magnetic field have been found to vary significantly with the water content of the medium. Results are discussed in light of multiple exciplex formation within the micelle which is further supported by the fluorescence lifetime measurements. Those exciplexes emitting at longer wavelength are found to be magnetic field sensitive while those emitting toward the blue region of the spectrum are insensitive toward magnetic field. Since the exciplex's emission characteristics and magnetic field sensitivity depend on its immediate surrounding, it has been concluded that the environment within the micelle is nonuniform. With an increase in hydration level, different zones of varying polarity are created within the reverse micelle. It has been pointed out that the magnetic field sensitive components reside inside the polar core of the micelle while those located near the hydrocarbon tail are field insensitive. However it has been presumed that an interconversion between the different types of exciplexes is possible. The environment within the reverse micelle is found to be largely affected by the change in temperature, and this is reflected in the exciplex emission property and the extent of magnetic field effect. Interestingly, the variation of MFE with temperature follows different trends in the dry and the wet reverse micelle. A comparison has been drawn with the reverse micelle of the ionic surfactant to get an insight into the difference between the various types of micellar environment.     

Novel peptidomimetic macrocycles showing exciplex fluorescence

The synthesis of five new chiral macrocyclic peptidomimetic naphthalenophanes, together with two open-chain derivatives, is described. The cyclization step is accomplished in good yields without the use of high dilution or template techniques. The new compounds have been photophysically studied by means of steady-state fluorescence spectroscopy. It has been found that the smaller the ring size, the higher the emission quantum yield from the excited charge-transfer state (CTS, exciplex) and the lower the fluorescence from the locally excited state (LES). The occurrence of exciplex fluorescence is noteworthy as the electron-donating groups are secondary amine moieties, which do not normally form emissive exciplexes.