Importance of packing coefficients of host cavities in the isomerization of open host frameworks: guest-size-dependent isomerization in cholic acid inclusion crystals with monosubstituted benzenes

The crystal structures of inclusion compounds of cholic acid (CA) with 28 monosubstituted benzenes have been systematically investigated. All of the crystals belong to the monoclinic space group P2(1) and have bilayer structures with one-dimensional molecular channels that can include guest compounds. They are classified into four types of host frameworks that depend on the conformations and stacking modes of the host compound. The host frameworks and the host-guest ratios depend primarily on the molecular volumes of the guest compounds. The packing coefficient of the host cavity (PCcavity), which is the volume ratio of the guest compound to the host cavity, is used to clarify the relationship between the guest volume and isomerization of the host frameworks. The value of PCcavity, for stable inclusion compounds lies in the range of 55-70%. Compounds out of this range induce isomerization of the host frameworks. The packing coefficients of other host-guest compounds, in which the guest components are included in the host cavities through steric dimensions and van der Waals forces, are also in this range. These results indicate that PCcavity is a useful parameter correlation for guest recognition and isomerization of the host frameworks.     

Enantioselective inclusion of amide guests into a chiral N,N′-ditrityl amino amide host to compensate the loss of hydrogen bonds broken by installation of trityl groups

A new crystalline N,N′-ditrityl amino amide host included several amide guests in the host cavity to form inclusion crystals. Although the installation of trityl groups into (S)-2-aminopropanamide broke its inherent hydrogen bonds of amide groups, inclusion of guest amides compensated the loss of hydrogen bonds. X-ray crystallography showed that these inclusion cavities and host–guest interactions such as hydrogen bonds, van der Waals interaction, and CH?O interactions play important roles for highly enantioselective inclusion. The enantiomeric inclusion was 67% ee (S-form) for N-phenyl 2-methylbutanamide, 82% ee (S-form) for N-phenyl 2-chlorobutanamide, and 83% ee (S-form) for N-phenyl 2-bromobutanamide.     

Recognition of N‐Alkyl and N‐Aryl Acetamides by N‐Alkyl Ammonium Resorcinarene Chlorides

N‐Alkyl ammonium resorcinarene chlorides are stabilized by an intricate array of intra‐ and intermolecular hydrogen bonds that leads to cavitand‐like structures. Depending on the upper‐rim substituents, self‐inclusion was observed in solution and in the solid state. The self‐inclusion can be disrupted at higher temperatures, whereas in the presence of small guests the self‐included dimers spontaneously reorganize to 1:1 host–guest complexes. These host compounds show an interesting ability to bind a series of N‐alkyl acetamide guests through intermolecular hydrogen bonds involving the carbonyl oxygen (C?O) atoms and the amide (NH) groups of the guests, the chloride anions (Cl^?) and ammonium (NH₂⁺) cations of the hosts, and also through CH ??? π interactions between the hosts and guests. The self‐included and host–guest complexes were studied by single‐crystal X‐ray diffraction, NMR titration, and mass spectrometry.     

Amphiphilic Inclusion Spaces for Various Guests and Regulation of Fluorescence Intensity of 1,8‐Bis(4‐aminophenyl)anthracene Crystals

A host framework for inclusion of various guest molecules was investigated by preparation of inclusion crystals of 1,8‐bis(4‐aminophenyl)anthracene (1,8‐BAPA) with organic solvents. X‐ray crystallographic analysis revealed construction of the same inclusion space incorporating 1,8‐BAPA and eight guest molecules including both non‐polar (benzene) and polar guests (N,N‐dimethylformamide, DMF). Fluorescence efficiencies varied depending on guest molecule polarity; DMF inclusion crystals exhibited the highest fluorescence intensity (Φ_F=0.40), four times as high as that of a benzene inclusion crystal (Φ_F=0.10). According to systematic investigations of inclusion phenomena, strong host–guest interactions and filling of the inclusion space led to a high fluorescence intensity. Temperature‐dependent fluorescence spectral measurements revealed these factors effectively immobilised the host framework. Although hydrogen bonding commonly decreases fluorescence intensity, the present study demonstrated that such strong interactions provide excellent conditions for fluorescence enhancement. Thus, this remarkable behaviour has potential application toward sensing of highly polar molecules, such as biogenic compounds.     

Molecular recognition of organic guest vapor by solid adamantylcalix[4]arene

A series of inclusion compounds prepared by saturation of the solid adamantyl[4]calixarene (host 1) with vaporous organic guests at 298 K was studied by thermal gravimetry and static headspace GC analyses. The sorption isotherms of guests by host 1, the stoichiometry of the guest—host inclusion compounds, and the Gibbs energies of their formation were determined. The data obtained give evidence of the molecular recognition of the guest shape by host 1. Hence, compound 1 can be used in sensors for recognizing volatile organic compounds with no strong hydrogen or donor-acceptor bonds involved.     

Architectural diversity and elastic networks in hydrogen-bonded host frameworks: from molecular jaws to cylinders

Guest-free guanidinium organomonosulfonates (GMS) and their inclusion compounds display a variety of lamellar crystalline architectures distinguished by different "up-down" projections of the organomonosulfonate residues on either side of a two-dimensional (2D) hydrogen-bonding network of complementary guanidinium ions (G) and sulfonate moieties (S), the so-called GS sheet. Using a combinatorial library of 24 GMS hosts and 26 guest molecules, a total of 304 inclusion compounds out of a possible 624 possible host-guest combinations were realized, revealing a remarkable capacity of the GMS hosts to form inclusion compounds despite the facile formation of the corresponding guest-free compounds and the absence of "predestined" inclusion cavities like those in related guanidinium organodisulfonate host frameworks. The GS sheets in the inclusion compounds behave as "molecular jaws" in which organomonosulfonate groups projecting from opposing sheets clamp down on the guest molecules, forming ordered interdigitated arrays of the host organic groups and guests. Both the guest-free and inclusion compounds display a variety of architectures that reveal the structural integrity of two-dimensional GS sheet and the unique ability of these hosts to conform to the steric demands of the organic guests. Certain GMS host-guest combinations prompt formation of tubular inclusion compounds in which the GS sheet curls into cylinders with retention of the 2D GS network. The cylinders assemble into hexagonal arrays through interdigitation of the organosulfonate residues that project from their outer surfaces, crystallizing in high-symmetry trigonal or hexagonal space groups. This unique example of network curvature and structural isomerism between lamellar and cylindrical structures, with retention of supramolecular connectivity, is reminiscent of the phase behavior observed in surfactant microstructures and block copolymers. The large number of host-guest combinations explored here permits grouping of the inclusion compound architectures according to the shape of the guests and the relative volumes of the organomonosulfonate groups, enabling more reliable structure prediction for this class of compounds than for molecular crystals in general.     

Guest Binding via N−H⋅⋅⋅π Bonding and Kinetic Entrapment by an Inorganic Macrocycle

Modern supramolecular chemistry is overwhelmingly based on non‐covalent interactions involving organic architectures. However, the question of what happens when you depart from this area to the supramolecular chemistry of structures based on non‐carbon frameworks remains largely unanswered, and is an area that potentially provides new directions in molecular activation, host–guest chemistry, and biomimetic chemistry. In this work, we explore the unusual host–guest chemistry of the pentameric macrocycle [{P(μ‐N^tBu}₂NH]₅ with a range of anionic and neutral guests. The polar coordination site of this host promotes new modes of guest encapsulation via hydrogen bonding with the π systems of the unsaturated C≡C and C≡N bonds of acetylenes and nitriles as well as with the PCO^? anion. Halide guests can be kinetically locked within the structure by oxidation of the phosphorus periphery by oxidation to P^V. Our study underscores the future promise of p‐block macrocyclic chemistry.     

Retarded Solid‐State Rotations of an Oval‐Shaped Guest in a Deformed Cylinder with CH–π Arrays

Upon encapsulating an oval‐shaped hydrocarbon guest, a cylindrical host deforms its shape to maximize intermolecular contacts. Structure–assembly relationship studies with a series of hydrocarbon guests disclosed the importance of molecular shapes and CH–π contacts. Multiple contacts and weak CH–π hydrogen bonds resulted in an optimal assembly; however, the shape deformation resulted in severe retardation of rotational motions in the crystal. Thus, unlike a circular guest, the oval‐shaped guest did not change its orientation in the host. Unexpectedly, the planar guest did not affect the packing structure to form a double helix in intertwined host arrays.     

Engineering Donor–Acceptor Heterostructure Metal–Organic Framework Crystals for Photonic Logic Computation

Photonic materials use photons as information carriers and offer the potential for unprecedented applications in optical and optoelectronic devices. In this study, we introduce a new strategy for photonic materials using metal–organic frameworks (MOFs) as the host for the rational construction of donor–acceptor (D–A) heterostructure crystals. We have engineered a rich library of heterostructure crystals using the MOF NKU‐111 as a host. NKU‐111 is based upon an electron‐deficient tridentate ligand (acceptor) that can bind to various electron‐rich guests (donors). The resulting heterocrystals exhibit spatially segregated multi‐color emission resulting from the guest‐dependent charge‐transfer (CT) emission. Spatially effective mono‐directional energy transfer results from tuning the energy gradient between adjacent domains through the selection of donor guest molecules, which suggests potential applications in integrated optical circuit devices, for example, photonic diodes, on‐chip signal processing, optical logic gates.     

Molecular Recognition Based on Membrane Potential Changes Induced by Host–Guest Complexation with Inorganic and Organic Guests

Guest-induced changes in membrane potentials are one of the representative modes of electrochemical signal transduction by molecular recognition at the interface of an organic membrane and an aqueous solution. Recent approaches based on synthetic hosts capable of effecting membrane potential changes by host–guest complexation with inorganic and organic guests are described. Although the studies in this area have mainly been aimed at inorganic cations as the target guests, recent approaches for recognition of inorganic anions and further organic guests are also documented. Highly selective changes in membrane potentials can be achieved for inorganic cations by sophisticated design of crown ethers and related compounds. Hosts with complementary charge(s) or multiple hydrogen bonding sites are effective for the recognition of inorganic anions and also of the polar moieties of organic ions. On the other hand, the recognition of nonpolar moieties of organic guests can be achieved by inclusion into well-defined cavities of host molecules. Quaternary onium and protonated amine salts are recently found to be capable of effecting membrane potential changes by complexation with neutral phenolic guests.     

Inclusion compounds of 2,5‐di­phenyl­hydro­quinone

The crystal structures of three 1:2 inclusion compounds that consist of host mol­ecule 2,5‐di­phenyl­hydro­quinone (C₁₈H₁₄O₂) and the guest mol­ecules 2‐pyridone (C₅H₅NO), 1,3‐di­phenyl‐2‐propen‐1‐one (chalcone, C₁₅H₁₂O) and 1‐(4‐meth­oxy­phenyl)‐3‐phenyl‐2‐propen‐1‐one (4′‐methoxy­chal­cone, C₁₆H₁₄O₂) were determined in order to study the ability of guest mol­ecules in inclusion compounds to undergo photoreaction. All of the crystals were found to be photoresistant. The three inclusion compounds crystallize in triclinic space group . In each case, the host/guest ratio is 1:2, with the host mol­ecules occupying crystallographic centers of symmetry and the guest mol­ecules occupying general positions. The guest mol­ecules in each of the inclusion compounds are linked to the host mol­ecules by hydrogen bonds. In the inclusion compound where the guest mol­ecule is pyridone, the host mol­ecule is disordered so that the hydroxy groups are distributed between two different sites, with occupancies of 0.738 (3) and 0.262 (3). The pyridone mol­ecules form dimers via N—H⋯O hydrogen bonds.     

Selective binding behaviors of p-sulfonatocalixarenes in aqueous solution

The complex structures, binding abilities, molecular selectivities, and thermodynamic origin of p-sulfonatocalixarenes upon complexation with kinds of guests are outlined in this review article, including inorganic cations, organic ammonium cations, pyridiniums and viologens, neutral organic molecules, dye molecules, and others. Calorimetric and spectroscopic investigations afford the complex stability constants, thermodynamic parameters and binding manners of the inclusion complexation of p-sulfonatocalixarenes with guest molecules. The π-stacking, hydrophobic and charge interactions are the main driving-forces during the course of the host–guest inclusion complexation. The molecular binding abilities and selectivities are influenced by not only the frameworks of calixarene cavities, structures of guest molecules, and their binding manners but also the conditions of solutions (mainly pH), which are discussed from the correlation between the structural features and molecular-recognition abilities. Moreover, the further applications and potentials of p-sulfonatocalixarenes are briefly described.     

Helical tubulate inclusion compounds

Abstract

The inclusion properties of the first helical tubuland diol hosts 1–5 have been surveyed and are reported. Bicyclic diol 1 forms helical tubulate inclusion compounds with most small solvent molecules, but with certain phenols hydrogen bonded co-crystalline materials are produced instead. Diol 2 yields helical tubulates with larger guest molecules, but if smaller solvents are used then an alternative host system is obtained. This has the guests trapped in ellipsoidal cavities located along constricted canals and is termed the ellipsoidal clathrate type. In some cases both inclusion types can be produced from 2 by varying the experimental conditions. The free volume present in the helical tubuland lattices of 3 and 5 is insufficient for guest inclusion. Diol 4 has the largest void space and can form inclusion compounds with large molecules such as ferrocene and squalene. X-ray crystal structures of representative examples of these compounds are discussed.     

Intercalation of Varied Sulfonates into a Layered MOC: Confinement‐Caused Tunable Luminescence and Novel Properties

The pores/channels of porous 3D metal–organic frameworks (MOFs) have been widely applied to incorporate gas, solvent, or organic molecules. On the contrary, the utilization of the interlamellar void of layered metal–organic complexes (MOCs) remains underappreciated, although it is more flexible and available to accommodate molecules with different sizes. In this work, diverse sulfonates have been intercalated purposely into an identical layered MOC, which constructed various novel intercalation compounds possessing fluorescent, white‐light emitting, photochromic, homochiral, or nonlinear optical (NLO) properties. With the help of single‐crystal X‐ray diffraction, their structures and the mutual interactions between the MOC host and the sulfonate guests were characterized. The properties of the guest molecules were tuned and meanwhile some new performances were generated after confining them into the interlayer region. Such a hybrid approach provides an efficient strategy to design and prepare multifunctional materials.     

Structural and magnetic modulation of a purely organic open framework by selective guest inclusion

Solvent inclusion/evacuation caused variations in the structural and magnetic characteristics of the purely organic porous magnet based on the tricarboxylic-substituted PTMTC radical. Whereas no inclusion is observed for nonpolar solvents, the exposure of crystals of the alpha-phase of PTMTC to vapors of polar organic solvents with hydrogen acceptor and/or donor functionalities, such as, ethanol, benzoic alcohol, n-decanol, THF, and DMSO results in the inclusion of these solvents in the highly polar tubular channels of the alpha-phase. The resulting inclusion compounds of formula PTMTC.x(guest) show several structural rearrangements, as confirmed by IR and XRPD (X-ray powder diffraction) measurements. The crystal transformations have been studied for a specific case: the PTMTC.EtOH adduct. The crystal structure reveals that included guest solvent molecules participate in the formation of new hydrogen bonds with the carboxylic groups of PTMTC radicals, inducing the disruption of several direct hydrogen bonds among these radicals. As expected, the interruption of direct hydrogen bonds between PTMTC radicals induces large transformations in the magnetic properties. From the ferromagnetic behavior of the alpha-phase, predominant antiferromagnetic interactions are observed for the inclusion adducts. Interestingly, both structural and magnetic changes are reversible after removal of guest solvent molecules.     

Complexes of TETROL with selected heterocyclics: unconventional host–guest hydrogen bonding and the correlation with host selectivity

Here we investigate and compare the more salient characteristics of host–guest complexes of (+)-(2R,3R)-1,1-4,4-tetraphenylbutane-1,2,3,4-tetraol (TETROL) with four heterocyclic guests, morpholine, piperidine, pyridine and dioxane. These guests each formed inclusion compounds with TETROL, and host:guest ratios were either 1:2 or 1:1. Single crystal diffraction experiments revealed unprecedented host behaviour in the presence of both piperidine and dioxane with respect to the mode of host–guest hydrogen bonding employed. Furthermore, by utilizing ¹H-NMR spectroscopy or gas chromatography (as applicable) as methods for analysing complexes obtained from competition experiments, we were able to identify the host selectivity order, and were gratified to discover that this order correlated precisely with host–guest hydrogen bond distance.     

A New Series of Charge-assisted Hydrogen-bonded Host Frameworks Based on [Co（en）_3]~（3＋）and Dicarboxylates

A new series of metal complex carboxylates(MCC)made of [Co(en)3]3+(MC)and either 2,6-naphthalenedicarboxylic(NDC)or 4,4-biphenyldicarboxylic(BPDC)were synthesized and structurally characterized.The four new compounds have a general formula(MC)2(C)3·n(guest)with the guests of dimethylformamide(DMF)and dimethyl sulfoxide(DMSO)and water.All the structures represent a pillared-layer type,where the layer consists of MC cations,carboxylate anions or water molecules via a large number of hydrogen bonds.The layers are pillared by the organic residues of NDC or BPDC,resulting in the inclusion cavities where the guest molecules reside.Although their topological structures are similar,they crystallize in different crystal structures due to the rearrangement of pillars and hydrogen-bonded layers.     

Dependence of selective enclathration on types of cholic acid crystals

Competitive recrystallizations of cholic acid (CA) from 1:1 binary mixtures of seven mono-substituted benzenes are demonstrated. The order of preference for guests to be incorporated into the cholic acid crystals are as follows: benzene, toluene > n-amylbenzene, n-hexylbenzene > ethylbenzene, n-propylbenzene, n-butylbenzene. These seven compounds afford bilayer type inclusion crystals that are classified into four types based on the host frameworks and host-guest stoichiometries. The order of selective enclathration corresponds to the four types as follows: 1:1 alpha G > 2:1 alpha G > 1:1 beta T or 2:1 alpha T. The preference for the alpha G type was also confirmed by investigating the host frameworks of the crystals obtained from binary mixtures. The dependence of the selectivity on the different types of CA crystals can be understood in terms of the fit of the guest molecule in the host cavity.     

Acid–Base Controllable Recognition Properties of a Highly Versatile Calix[6]crypturea

Versatile concave receptors with binding properties that can be controlled by external stimuli are rare. Herein, we report on a calix[6]crypturea ( 1 ) that features two different binding sites in close proximity, that is, a tris(2‐aminoethyl)amine (tren)‐based tris‐ureido cap that provides convergent hydrogen‐bond‐donor sites and a hydrophobic cavity suitable for the inclusion of organic guests. The binding properties of this heteroditopic receptor have been evaluated by NMR spectroscopic studies. Compound 1 behaves as a remarkably versatile host that strongly binds neutral molecules, anions, or contact ion pairs. Within each family of guests, compound 1 is able to discriminate between different guests with a high degree of selectivity. Indeed, neutral molecules that possess hydrogen‐bond donor and acceptor groups, chloride anions, and linear ammonium ions associated to F^? or Cl^? are particularly well recognized. In comparison with all the related receptors, compound 1 displays several unique features: 1) charged or neutral species are also recognized in polar or protic solvents, 2) thanks to the flexibility of the calixarene structure, induced‐fit processes allow the binding of large, biologically relevant ammonium salts such as neurotransmitters, and 3) the protonation of the basic cap leads to a positively charged receptor, 1? H⁺, which is reluctant to host anions and in which host properties are now governed by strong charge–dipole interactions with the guests. In other words, compound 1 presents an acid–base controllable tris‐ureido recognition site protected by a hydrophobic corridor that can select guests through induced‐fit processes. Thus, its versatile host properties can be allosterically controlled by protonation and selective guest‐switching processes are possible. To illustrate all these remarkable features, a sophisticated three‐pole supramolecular switch, based on the interconversion of host–guest systems displaying either charged or neutral guests, is described.     

A Dynamic Hydrogen‐Bonded Azo‐Macrocycle for Precisely Photo‐Controlled Molecular Encapsulation and Release

A light‐responsive system constructed from hydrogen‐bonded azo‐macrocycles demonstrates precisely controlled propensity in molecular encapsulation and release process. A significant decrease in the size of the cavity is observed in the course of the E→Z photoisomerization based on the results from DFT calculations and traveling wave ion mobility mass spectrometry. These macrocyclic hosts exhibit a rare 2:1 host–guest stoichiometry and guest‐dependent slow or fast exchange on the NMR timescale. With the slow host–guest exchange and switchable shape change of the cavity, quantitative release and capture of bipyridinium guests is achieved with the maximum release of 68 %. This work underscores the importance of slow host–guest exchange on realizing accurate release of organic cations in a stepwise manner under light irradiation. The light‐responsive system established here could advance further design of novel photoresponsive molecular switches and mechanically interlocked molecules.