Capillary scale light emitting diode based multi-reflection absorbance detector

We describe a light emitting diode (LED) based multi-reflection capillary scale absorbance detector based on both square and round capillaries and compare their performance with a conventional single-pass on-tube detector. The optical path length is extended by silver coating, the external surface of the capillary. The reflective geometry has been reported to be less prone to artifacts induced by refractive index changes; we do find this to be true. Although the detection volume/illuminated volume is increased some, a multi-reflection cell based on a 180 μm bore capillary with a ∼2-cm long illuminated volume shows over a 50-fold gain in signal-to-noise (S/N) compared to a single-pass on-tube configuration with the same capillary. The limit of detection (LOD) is 4.4 fmol (2.6 pg, 1 μL of 22.0 nM injected dye) BTB under pulseless (pneumatic) flow conditions. The cells behave as multipath devices where the effective path lengths are greater at low absorbance values. In our experiments, where non-coherent light is launched through optical fibers that are large compared to capillary bore dimensions, increase in the effective path length of the cell do not occur in a predictable fashion with the angle of incidence of the light beam. Although the effective path length almost linearly increases with increasing distance between the light entry and exit windows, the absolute values of the effective path lengths are always lower than this physical distance, suggesting that after some passage through the solution, light largely travels through or along the glass wall. Square capillaries have better light transmission and offer some performance advantages. Multi-reflection cells can indeed be of value for sensitive detection in microflow systems.     

Pure-silica optical waveguides, fiber couplers, and high-aspect ratio submicrometer channels for electrokinetic separation devices

A new fabrication procedure for integration of ultraviolet transparent pure-silica planar waveguides, fiber couplers and high-aspect ratio submicrometer channels is presented. Only a single photolithographic mask step is required. The channels are 80-90 microm deep and the width can be reduced to about 0.5 microm, corresponding to a height-to-width ratio of more than 150. The core of the waveguides consists of pure silicon dioxide, which is favorable over doped silica, due to the absence of absorption centers associated with the dopants. This furthermore improves the long-term stability of the waveguides, because of an increased radiation resistance of the glass. The propagation loss decreases from 1.0 dB/cm at 200 nm to 0.2 dB/cm at 800 nm, which, to our knowledge, is the lowest propagation loss reported for integrated planar waveguides in the ultraviolet wavelength region to date. The effective optical path length is 1.2 mm for an absorbance cell with a nominal length of 1.0 mm, indicating effective suppression of stray light. The limit of detection for paracetamol when present in the entire channel network was determined to 3 microg/mL. Finally, the applicability of the fabricated devices for capillary electrophoresis was evaluated by separation of caffein, paracetamol and ketoprofone using absorbance detection at 254 nm.     

On-chip electrochromatography using sol-gel immobilized stationary phase with UV absorbance detection

A chromatography column on a chip was fabricated by immobilizing reversed-phase stationary phase particles (5 microm, C4) using sol-gel technology. Channels were fabricated in quartz using photolithography and wet etching. Localization of the stationary phase was achieved by immobilizing the stationary phase at the desired location in the separation channel prior to bonding of the cover plate. Cross channel design was employed for gated injection. An optical fiber setup was developed for carrying out on-chip UV absorbance detection. The effective optical path length was theoretically determined for the trapezoidal shaped channel and the result was shown to match closely with the experimentally determined value. The effect of applied voltage on velocity was evaluated using thiourea as an unretained marker. Separation performance of the stationary phase was demonstrated by separation of three peptides (Trp-Ala, Leu-Trp and Trp-Trp) under isocratic chromatographic conditions.     

Performance of an in-plane detection cell with integrated waveguides for UV/Vis absorbance measurements on microfluidic separation devices

A microfluidic device with integrated waveguides and a long path length detection cell for UV/Vis absorbance detection is presented. The 750 microm U-cell detection geometry was evaluated in terms of its optical performance as well as its influence on efficiency for electrophoretic separations in the microdevice. Stray light was found to have a strong effect on both, the sensitivity of the detection and the available linear range. The long path length U-cell showed a 9 times higher sensitivity when compared to a conventional capillary electrophoresis (CE) system with a 75 microm inner diameter (ID) capillary, and a 22 times higher sensitivity than with a 50 microm ID capillary. The linear range was comparable to that achieved in a 75 microm ID capillary and more than twice as large as in a 50 microm ID capillary. The use of the 750 microm U-cell did not contribute significantly to band broadening; however, a clear quantification was made difficult by the convolution of several other band broadening sources.     

Multi-layer microfluidic glass chips for microanalytical applications

A new, versatile architecture is presented for microfluidic devices made entirely from glass, for use with reagents which would prove highly corrosive for silicon. Chips consist of three layers of glass wafers bonded together by fusion bonding. On the inside wafer faces a network of microfluidic channels is created by photolithography and wet chemical etching. Low dead-volume fluidic connections between the layers are fabricated by spark-assisted etching (SAE), a computer numerical controlled (CNC)-like machining technique new to microfluidic system fabrication. This method is also used to form a vertical, long path-length, optical cuvette through the middle wafer for optical absorbance detection of low-concentration compounds. Advantages of this technique compared with other, more standard, methods are discussed. When the new glass-based device for flow-injection analysis of ammonia was compared with our first-generation chips based on silicon micromachining, concentration sensitivity was higher, because of the longer path-length of the optical cuvette. The dependence of dispersion on velocity profile and on channel cross-sectional geometry is discussed. The rapid implementation of the devices for an organic synthesis reaction, the Wittig reaction, is also briefly described.     

Practical method for evaluation of linearity and effective pathlength of on-capillary photometric detectors in capillary electrophoresis

The optical characteristics of on-capillary photometric detectors for capillary electrophoresis were evaluated and five commercial detectors were compared. Plots of sensitivity (absorbance/concentration) versus absorbance obtained with a suitable testing solution yield both the linear range and the effective path length of the detector. The detector linearity is a crucial parameter when using absorbing electrolytes, such as for indirect photometric detection, and especially for highly absorbing electrolyte probe ions. The upper limits of the linear ranges (determined as 5% decline in sensitivity) for five commercial detectors ranged from 0.175 to 1.2 AU. The effective pathlength reflects the quality of the optical design of the detector and is equal to the capillary internal diameter only for a light beam passing exactly through the capillary centre, but becomes progressively shorter for imperfect optical designs. The determined effective pathlength for the five investigated detectors ranged from 49.7 to 64.6 microm for a 75 microm I.D. capillary.     

Multiple internal reflection poly(dimethylsiloxane) systems for optical sensing

Compact poly(dimethylsiloxane)-based (PDMS) multiple internal reflection systems which comprise self-alignment systems, lenses, microfluidic channels and mirrors have been developed for highly sensitive absorbance measurements. With the proper definition of air mirrors at both sides of the sensing region, the optical path of the light from the LED has been meaningfully lengthened without a dramatic increase of the mean flow cell volume. By recursive positioning of such air mirrors, propagating multiple internal reflection (PMIR) systems have been designed, simulated and characterized. Experimental results confirm the ray-tracing predictions and allow the determining that there are some regions of the mean flow cell volume that do not contribute to the increase of the sensitivity. The tailoring of the sensing region, following the optical path, results in a similar limit of detection (110 nM) for fluorescein diluted in phosphate buffer. Finally, a ring configuration, labelled RMIR, has also been developed. With the addition of a third air mirror, the LOD can be decreased to 41 nM with the additional advantage of a substantial decrease of the length of the sensing region. These results confirm the validity of the proposed systems for high sensitivity measurements.     

A microchip electrophoresis system with integrated in-plane electrodes for contactless conductivity detection

We present a new approach for contactless conductivity detection for microchip-based capillary electrophoresis (CE). The detector integrates easily with well-known microfabrication techniques for glass-based microfluidic devices. Platinum electrodes are structured in recesses in-plane with the microchannel network after glass etching, which allows precise positioning and batch fabrication of the electrodes. A thin glass wall of 10-15 microm separates the electrodes and the buffer electrolyte in the separation channel to achieve the electrical insulation necessary for contactless operation. The effective separation length is 34 mm, with a channel width of 50 microm and depth of 12 microm. Microchip CE devices with conductivity detection were characterized in terms of sensitivity and linearity of response, and were tested using samples containing up to three small cations. The limit of detection for K+ (18 microM) is good, though an order of magnitude higher than for comparable capillary-based systems and one recently reported example of contactless conductivity on chip. However, an integrated field-amplified stacking step could be employed prior to CE to preconcentrate the sample ions by a factor of four.     

Quantitative 3-dimensional profiling of channel networks within transparent lab-on-a-chip microreactors using a digital imaging method

We have developed a method for the quantitative 3-dimensional profiling of micron sized channel networks within optically transparent "lab-on-a-chip" microreactor devices. The method involves capturing digitised microscope images of the channel network filled with an optically absorbing dye. The microscope is operated in transmission mode using light filtered through a narrow bandpass filter with a maximum transmission wavelength matching the wavelength of the absorbance maximum of the dye solution. Digitised images of a chip filled with solvent and dye solution are analysed pixel by pixel to yield a spatially resolved array of absorbance values. This array is then converted to optical path length values using the Beer-Lambert law, thereby providing the 3D profile of the channel network. The method is capable of measuring channel depths from 10 to 500 microm (and probably even smaller depths) with an accuracy of a few percent. Lateral spatial resolution of less than 1 microm is achievable. It has been established that distortion of the measured profiles resulting from a mismatch in refractive index between the dye solution and the glass of the microreactors is insignificant. The method has been successfully used here to investigate the effects of thermal bonding and etch time on channel profiles. The technique provides a convenient, accurate and non-destructive method required to determine channel profiles; information which is essential to enable optimisation of the operating characteristics of microreactor devices for particular applications.     

Ultrasensitive absorption spectroscopy of optically-trapped aerosol droplets

High-sensitivity optical absorption measurements on individual sub-picoliter aqueous droplets are reported using aerosol optical tweezers to simultaneously manipulate and characterize a sample droplet and a control droplet for comparison. It is demonstrated that the detection sensitivity to trace analytes is set by the weak absorption by the solvent, water, and that absorbances less than 5 x 10(-7) can be measured over pathlengths of less than 10 microm. The potential applications of this approach to analyze aerosol particle composition and to perform trace analysis are discussed.     

Measuring acetylene concentrations using a frequency chirped continuous wave diode laser operating in the near infrared

Two frequency chirped continuous wave diode lasers operating in the near infrared (IR) at wavelengths of lambda approximately 1.535 microm and lambda approximately 1.520 microm have been used to measure acetylene concentrations using the P(17) and R(9) rotational lines of the (nu1 + nu3) vibrational combination band. The diode lasers were frequency chirped by applying an electrical current pulse to the laser driver at a repetition rate of greater than 1 kHz. As the laser is operated at high repetition rates, more than 1000 spectra per second can, in principle, be acquired and summed, allowing fast accumulation of data, rapid averaging and consequent improvement of the signal to noise ratio and detection limit. Experiments were performed using a single-pass cell with a path length of 16.4 cm, and also an astigmatic multi-pass absorption cell aligned to give a path length of 56 m. Detection limits corresponding to minimum detectable absorption coefficients, alpha(min), of 5.6 x 10(-5) and 7.8 x 10(-8) cm(-1), respectively, were obtained over a 4 s detection bandwidth. These detection limits would correspond to mixing ratios of 21 parts per million by volume (ppmv) and 59 parts per billion by volume (ppbv) of acetylene at 1 atm in air, with the deleterious effects of pressure broadening accounted for. The single-pass cell was used to perform breakthrough volume (BTV) experiments for the low volume adsorbent traps used to pre-concentrate organic compounds in air, taking advantage of the capability of the system to measure concentrations in real time.     

Pathlength alteration in an interferometer by rotation of a retroreflector

In optical interferometers the alteration of pathlengths is usually achieved by moving one of the two interferometer mirrors back and forth. Employing rotating retroreflectors (corner reflectors), two slightly different concepts have been developed to replace this stop and go movement by a continuous rotation.     

Capillary electrophoretic separation of dsDNA under nonuniform electric fields

Improved sensitivity for the analysis of DNA by capillary electrophoresis has been achieved, based on simultaneous increases in optical path length and injection volume. To increase the optical path length, bubble cells with diameters ranging from 150 to 450 microm have been fabricated and tested. In terms of resolution and sensitivity, a bubble cell of 300 microm diameter is appropriate when using 75-microm capillaries. To allow greater injection volumes, we performed on-line concentration of DNA in the presence of electroosmotic flow (EOF) using 2.0% poly(ethylene oxide) (PEO). With a 300-microm bubble cell, a 170-fold improvement in the sensitivity for the 89-bp fragment has been accomplished when injecting about 0.33 microL DNA. In the presence of the bubble cell, the resolution for the large fragments improves while that for the small ones (<124 base pair) decreases. The effect of bubble cells was further investigated by conducting DNA separation in the absence of EOF, showing that improvements in resolution are mainly due to increased migration differences when DNA migrated at low electric field strengths in the bubble region. We have suggested that such an effect is more profound using shorter capillaries, leading to complete separation of phiX 174 RF DNA-Hae III digest in 2 min.     

High precision measurements of atmospheric nitrous oxide and methane using thermoelectrically cooled mid-infrared quantum cascade lasers and detectors

A compact, fast response, mid-infrared absorption spectrometer using thermoelectrically (TE) cooled pulsed quantum cascade (QC) lasers and TE detectors has been developed to demonstrate the applicability of QC lasers for high precision measurements of nitrous oxide and methane in the earth's atmosphere. Reduced pressure extractive sampling with a 56 m path length, 0.5 l volume, multiple pass absorption cell allows a time response of <0.1s which is suitable for eddy correlation flux measurements for these gases. Precision of 0.3 ppb (rms, 1s averaging time) or 0.1% of the ambient concentration for N(2)O (4 ppb or 0.2% of ambient for CH(4)), has been demonstrated using QC lasers at 4.5 microm (7.9 microm for CH(4)), corresponding to an absorbance precision of 4 x 10(-5) Hz(-1/2) (8 x 10(-5) Hz(-1/2) for CH(4)). Stabilization of the temperature of the optical bench and the pulse electronics results in a minimum Allan variance corresponding to 0.06 ppb for N(2)O with an averaging time of 100 s (0.7 ppb with an averaging time of 200 s for CH(4)). The instrument is capable of long-term, unattended, continuous operation without cryogenic cooling of either laser or detector.     

An open path H2O/CO2 gas analyzer for eddy correlation systems: theory and design

A fast response, open path tunable diode laser absorption spectroscopy H2O/CO2 gas analyzer suitable for eddy correlation concentration measurements in near surface turbulent environments is presented. The turbulent temperature characteristics, analysis theory, analysis methods, design structure and specifications of this dual laser analyzer are described. A fiber connected optical head with folded optical path is used to extend the resolution to ppb levels for H2O at 1.3964 microm and CO2 at 2.014 microm. The Fourier (discrete cosine) transform absorbance ratio analysis methods are outlined along with the modifications for temperature and pressure measurements in turbulent flows. Synthesis of the reference absorbance function using measured temperature, pressure and the Hitran parameters is extended with incorporation of the Hitran parameters n, gamma temperature exponent and E', lower state energy. Additionally, the mole fraction equation developed for this Hitran model is presented and an absolute calibration technique is outlined along with methods of calibration retention. Simulation results on mole fraction estimations and errors are presented for synthetic temperature and laser noise processes and are used to verify the specifications.     

Site-selective nitrogen isotopic ratio measurement of nitrous oxide using 2 microm diode lasers

We demonstrate a high-precision measurement of the isotopomer abundance ratio 14N(15)N(16)O/15N(14)N(16)O/14N(14)N(16)O (approximately 0.37/0.37/100) using three wavelength-modulated 2 microm diode lasers combined with a multipass cell which provides different optical pathlengths of 100 and 1 m to compensate the large abundance difference. A set of absorption lines for which the absorbances have almost the same temperature dependence are selected so that the effect of a change in gas temperature is minimized. The test experiment using pure nearly natural-abundance N(2)O samples showed that the site-selective 15N/14N ratios can be measured relative to a reference material with a precision of +/-3 x 10(-4) (+/-0.3 per thousand) in approximately 2 h.     

DNA analysis on microfabricated electrophoretic devices with bubble cells

Microfluidic devices with bubble cells have been fabricated on poly(methyl methacrylate) (PMMA) plates and have been employed for the analysis of DNA using polyethylene oxide (PEO) solutions. First, the separation channel was fabricated using a wire-imprinting method. Then, wires with greater sizes or a razor blade glued in a polycarbonate plate was used to fabricate bubble cells, with sizes of 190-650 microm. The improvements in resolution and sensitivity have been achieved for large DNA (> 603 base pair, bp) using such devices, which depend on the geometry of the bubble cell. The main contributor for optimal resolution is mainly due to DNA migration at lower electric field strengths inside the bubble cell. On the other hand, slight losses of resolution for small DNA fragments have been found mainly due to diffusion, supported by the loss of resolution when separating two small solutes. With a bubble cell of 75 microm (width) x 500 microm (depth), the sensitivity improvement up to 17-fold has been achieved for the 271 bp fragment in the separation of PhiX-174/HaeIII DNA restriction fragments. We have also found that a microfluidic device with a bubble cell of 360 microm x 360 microm is appropriate for DNA analysis. Such a device has been used for separating DNA ranging from 8 to 2176 bp and polymerase chain reaction (PCR) products amplified after 30 cycles, with rapidity and improvements in the sensitivity as well as resolution.     

Potentiality of optical diffraction grating technology in the fabrication of miniaturized multicapillary chromatographic and electrophoresis columns.

A possible way of fabricating miniaturized multicapillary columns for gas and liquid chromatographs or electrophoresis devices containing many thousands of identical channels with a width (or depth) of approximately 1-30 microm by means of industrial technology for the production of optical plane reflecting diffraction gratings is proposed.     

Temperature dependence of the optical properties of liquid benzene in the infrared between 25 and 50 degrees C

The vibrational properties of benzene have long been a topic of interest. A recent comparison presented in the literature of the liquid and gas intensities at 25 degrees C have revealed some intriguing results regarding how the interaction between the hydrogens and the neighbouring pi-clouds in the liquid affect the vibrational intensities. To gain insight into the effect of temperature on the optical properties of liquid benzene and these interactions, the optical constants of liquid benzene have been determined through transmission measurements between 7,400 and 800 cm(-1). The spectra were measured in cells with KBr windows over a path length range of 15-1,000 microm and were collected over a temperature range of 30-50 degrees C in 5 degrees C increments. Variations in the imaginary molar polarizability spectra are examined and compared to a similar study of liquid toluene completed several years ago.     

Optical cell with a temperature-control unit for a vacuum-ultraviolet circular dichroism spectrophotometer.

We constructed an assembled-type MgF2 cell that can function under a high vacuum (10(-4) Pa), and is capable of measuring the vacuum-ultraviolet circular dichroism (VUVCD) spectrum in a wavelength region down to 140 nm for aqueous solutions. Its path length can be adjusted by various spacers in the range from 1.3 to 50 microm. The temperature-control unit of the cell was also constructed with a Peltier thermoelectric element to keep the temperature of a sample within an accuracy of +/- 1 degrees C in the temperature range from -30 to 70 degrees C. The optical cell and the temperature-control unit were confirmed to have good performance by monitoring the VUVCD spectra of ammonium d-camphor-10-sulfonate and myoglobin aqueous solutions. This cell is available not only for VUVCD spectroscopy, but also for vacuum-ultraviolet absorption measurements.