Conformational analysis of some dimethylheptanes with the aid of normal coordinate calculations

Infrared spectra were obtained for the series of 2,X-dimethylheptanes (X = 2,3,4,5,6) and were interpreted with the aid of normal coordinate calculations. 2,2-DMH exists as two conformers, with the C_s conformer being the only one present in the crystalline solid. 2,3-DMH exists in at least three conformations, all of C₁ symmetry. Ambiguities in spectral data indicate that more conformations are present. Two C₁ conformations of 2,4-DMH were shown to be present, but an unassigned band may indicate the presence of a third conformer. The presence of at least four conformers, all of C₁ symmetry, was shown to be necessary to explain the spectrum of 2,5-DMH. Finally, 2,6-DMH was shown to exist as three conformers, of symmetries C_s, C₂, and C₁. Vibrational assignments were made for all the probable conformers of all five compounds.     

Molecular conformations of jet-cooled 2-methylindan and 2-phenylindan

The molecular conformations of jet-cooled 2-methylindan (2MI) and 2-phenylindan (2PI) have been studied using resonant-enhanced two-photon ionization spectroscopy in combination with ab initio calculations. Both axial (2MI_ax) and equatorial (2MI_eq) conformers of 2MI have been observed. A 2MI_eq/2MI_ax conformer ratio of 2.3 was estimated at 298 K, leading to the energy difference, \Updelta E = E _{2 \textMI\textax} - E _{2 \textMI\texteq} \Updelta E = E_{{ 2 {\text{MI}}_{\text{ax}} }} - E_{{ 2 {\text{MI}}_{\text{eq}} }} , of 0.49 kcal/mol. Ab initio calculations predicted three stable conformers of 2PI: two equatorial conformers (2PI_eq0 and 2PI_eq90), and one axial conformer (2PI_ax). Only the axial conformer of 2PI (2PI_ax) was experimentally observed. The indan ring of 2PI_ax is slightly more planar than the indan rings of the two equatorial conformers of 2PI because of the intramolecular C_sp2–H/π interactions in 2PI_ax. The equatorial conformers of 2PI relax to the more stable axial conformer because of the high pre-expansion temperature (383 K), and relatively low barrier (1.68 kcal/mol) to axial–equatorial interconversion. The barrier (2.33 kcal/mol) to axial–equatorial interconversion in 2MI is high enough to prevent conformational relaxation at the pre-expansion temperature of 298 K. Intramolecular C–H/π interactions are found to be more important in determining the conformational preference of 2PI than 2MI; this can be attributed to the higher acidity of the C_sp2–H bond than that of C_sp3–H bond.     

Predictive Abilities of Scaled Quantum Mechanical Molecular Force Fields: Application to 1,3-Butadiene

The positions of some IR bands of the s-trans-1,3-butadiene-h ₆ and -1,1,2-d ₃ isotopomers in the gas phase have been measured using a Brucker IFS 120 HR spectrometer with a resolution of 2 cm^–1. The structural parameters of the s-trans- and s-gauche-1,3-butadiene conformers were optimized completely at the MP2/6-31G* theoretical level and their MP2/6-31G*//MP2/6-31G* quantum mechanical force fields (QMFFs) were calculated. Using only the experimental vibrational frequencies of s-trans-1,3-butadiene-h ₆ the QMFF of the s-trans conformer was corrected by Pulay's scaling method (eight scale factors were involved). The scaled QMFF was used to calculate the mean vibrational amplitudes and the Coriolis coupling constants of s-trans-1,3-butadiene-h ₆ and the vibrational frequencies of 12 of its deuterated isotopomers. The set of scale factors obtained for correction of the s-trans QMFF was transferred to the QMFF of the s-gauche conformer. Its theoretical vibrational spectrum and those of some deuterated and C¹³ isotopomers were calculated. The ability of this scaling approach (transferring of scale factors) to predict the vibrational frequencies of rotational conformers and their isotopomers, as well as other molecular characteristics, and to permit detection of perturbations of the experimental bands are discussed.     

1, 3-二氟丙烷构象和电子结构的从头算和 密度泛函理论计算

用从头算和密度泛函数理论研究了1,3-二氟丙烷的构象和电子结构。在计算的各种理论水平下,GG构象是最稳定构象,AG构象次之。利用分子力场的非键作用定量化旁式效应,由MM2力场的非键参数计算的结果较为合理。对于GG和AG构象,在HF/6-31G^*和HF/6-31+G^*^*水平预测的构象分布与实验值接近。     

Vibrational analysis of tertiary alkyl chlorides

Vibrational spectra were obtained for 2-chloro-2-methylpentane, 3-chloro-3-methylpentane, 2-chloro-2-methylhexane, and 3-chloro-3-methylhexane. All four compounds exist in T_HHH and T_CHH conformations in the neat liquid, and the T_HHH' conformer of the last named compound also seems to be present. Only the T_HHH conformer is present in the crystalline state of the two pentanes, but the hexanes could not be made to crystallize and both conformers were present in the solid. A 44-parameter modified valence force field was used in normal coordinate calculations, with fifteen force constants being adjusted to fit 188 assigned frequencies below 1500 cm^?1 of six molecules (two conformers each of 2-chloro-2-methylbutane, 2-chloro-2-methylpentane, and 3-chloro-3-methylpentane). The resulting force constant values were used in zero-order calculations of the two hexanes as an aid in interpreting vibrational spectra for those compounds.     

Theoretical study of structure,vibrational and electronic spectra of isomers of methyl-3-methoxy-2-propenoate

A systematic quantum mechanical study of the possible conformations, their relative stabilities, vibrational and electronic spectra and thermodynamic parameters of methyl-3-methoxy-2-propenoate has been reported for the electronic ground (S₀) and first excited (S₁) states using time-dependent and time-independent Density Functional Theory (DFT) and RHF methods in extended basis sets. Detailed studies have been restricted to the E-isomer, which is found to be substantially more stable than the Z-isomer. Four possible conformers c′Cc, c′Tc, t′Cc, t′Tc, of which the first two are most stable, have been identified in the S₀ and S₁ states. Electronic excitation to S₁ state is accompanied with a reversal in the relative stability of the c′Cc and c′Tc conformers and a substantial reduction in the rotational barrier between them, as compared with the S₀ state. Optimized geometries of these conformers in the S₀ and S₁ states are being reported. Based on suitably scaled RHF/6-31G^** and DFT/6-311G^** calculations, assignments have been provided to the fundamental vibrational bands of both these conformers in terms of frequency, form and intensity of vibrations and potential energy distribution across the symmetry coordinates in the S₀ state. A complete interpretation of the electronic spectra of the conformers has been provided.     

Molecular dynamics, density functional and second-order Møller–Plesset theory study of the structure and conformation of acetylcholine in vacuo and in solution

 Molecular mechanics minimizations based on the CVFF force field and molecular dynamics simulation for a time of 2.5 ns were performed to examine the conformational behaviour and the molecular motion of acetylcholine in vacuo and in aqueous solution. Five low-lying conformations, namely the TT, TG, GG, G*G and GT, were obtained from molecular mechanics computations with the GT structure as the absolute minimum. Molecular dynamics trajectories in vacuo and in water show that only four (GT, GG, G*G and TG) and three (TG, TT and GT) conformations are present in the simulation time, respectively. Density functional B3LYP and second-order M?ller–Plesset (MP2) methods were then used to study all the five lowest-lying conformers of acetylcholine neurotransmitter in vacuo and in water by the polarizable continuum model approach. The B3LYP and MP2 computations show that in the gas phase all minima lie in a narrow range of energy with the G*G conformer as the most stable one. The relative minima GG, GT, TG and TT are located at 1.1 (3.3), 1.8 (4.2), 2.1 (4.5) and 4.3 (7.3) kcal/mol above the absolute one at the B3LYP (MP2) level. The preferred conformation in water is the TG. Solvation reduces the relative energy differences between the five minima in both computations. Received: 4 April 2001 / Accepted: 5 July 2001 / Published online: 30 October 2001     

Argon-matrix-isolation Raman spectra and density functional study of 1,3-butadiene conformers

s-trans, s-cis and gauche conformers of 1,3-butadiene have been studied using density functional theory and the coupled-cluster method using double substitutions (CCD). Matrix isolation Raman and IR data for the minor conformer were obtained and are used in combination with the theoretical results to resolve earlier ambiguities in vibrational assignments. Based on high-quality Hessians, new harmonic stretching force constants are reported for the carbon backbone of s-trans-1,3-butadiene. For the minor conformer the best unscaled root mean square error of the calculated frequencies for the s-cis and gauche geometries are 17.5 cm⁻¹ and 7.4 cm⁻¹, respectively, primarily due to a better agreement of the gauche results for the vibrations at 983 cm⁻¹, 596 cm⁻¹ and 470 cm⁻¹ which depend strongly on the torsional angle. Although this points towards the gauche form rather than the s-cis form, the calculated transition dipole moment directions at the CCD/6-311G(d,p) level confirm the earlier conclusion that the minor conformer has C _{2 v} symmetry in the matrix. It is concluded that either the better agreement between the frequencies calculated for the gauche form and the observed values is coincidental, or that the molecule is indeed nonplanar in the matrix and tunnels very rapidly between the two mirror-image forms (or its lowest vibrational level lies above the barrier). Received: 1 July 1998 / Accepted: 26 October 1998 / Published online: 15 February 1999     

Comparison of experimental and density functional study on the molecular structure, infrared and Raman spectra and vibrational assignments of 6-chloronicotinic acid

The experimental and theoretical study on the structures and vibrations of 6-chloronicotinic acid (6-CNA, C(6)H(4)ClNO(2)) are presented. The Fourier transform infrared spectra (4,000-50 cm(-1)) and the Fourier transform Raman spectra (3,500-50 cm(-1)) of the title molecule in solid phase have been recorded, for the first time. The geometrical parameters and energies have been obtained for all four conformers from DFT (B3LYP) with different basis sets calculations. There are four conformers, C1, C2, C3, and C4 for this molecule. The computational results diagnose the most stable conformer of 6-CNA as the C1 form. The vibrations of the two stable and two unstable conformers of 6-CNA are researched with the aid of quantum chemical calculations. The molecular structure, vibrational frequencies, infrared intensities and Raman scattering activities and theoretical vibrational spectra were calculated a pair of molecules linked by the intermolecular OH...O hydrogen bond. The spectroscopic and theoretical results are compared to the corresponding properties for 6-CNA stable monomers and dimer of C1 conformer.     

Molecular Structure and Conformational Composition of 1-[(Methylthio)methyl]-2-nitrobenzene (MTMNB): A Theoretical and Experimental Study

The conformational composition of gaseous MTMNB and the molecular structures of the rotational forms have been studied by electron diffraction at 130^∘C aided by results from ab initio and density functional theory calculations. The conformational potential energy surface has been investigated by using the B3LYP/6-31G(d,p) method. As a result, six minimum-energy conformers have been identified. Geometries of all conformers were optimized using MP2/6-31G(d,p), B3LYP/6-31G(d,p), and B3LYP/cc-pVTZ methods. These calculations resulted in accurate geometries, relative energies, and harmonic vibrational frequencies for all conformers. The B3LYP/cc-pVTZ energies were then used to calculate the Boltzmann distribution of conformers. The best fit of the electron diffraction data to calculated values was obtained for the six conformer model, in agreement with the theoretical predictions. Average parameter values (r_a in angstroms, angle α in degrees, and estimated total errors given in parentheses) weighted for the mixture of six conformers are r(C–C) = 1.507(5), r(C–C)_{ring, av} = 1.397(3), r(C–S)_av = 1.814(4), r(C–N) = 1.495(4), r(N–O)_av = 1.223(3), ∠(C–C–C)_ring = 116.0–122.5, ∠ C6–C4–C7 = 118.2(4), ∠ C–C–S = 113.6(6), ∠ C–S–C = 98.5(12), ∠ N–C–C4 = 121.9(3), ∠(O–N–C)_av = 116.8(3), ∠ O–N–O = 127.0(4). Torsional angles could not be refined. Theoretical B3LYP/cc-pVTZ torsional angles for the rotation about C–N bond, φ_C−N, were found to be 30.5–36.5^∘ for different conformers. As to internal rotation about C–C and C–S bonds, values of φ_C−C = 68–118^∘ and φ_C−S = 66–71^∘ were obtained for the three most stable conformers with gauche orientation with respect to these bonds. Some conclusions of this work were presented in a short communication in Russ. J. Phys. Chem. 2005, 79, 1701.     

Ab initio and density functional studies on the structure and vibrational spectra of 2-hydroxy-1,4-naphthoquinone-1-oxime derivatives

Structure and vibrational frequencies of lawsoneoxime and its C₃-substituted (R=CH₃, NH₂, Cl, NO₂) derivatives in keto and nitrosophenol forms have been obtained employing the Hartree–Fock and density functional methods. Charge distributions in different conformers have been studied using the molecular electrostatic potential topography as a tool. For all these derivatives except for nitrolawsoneoxime the amphi conformer in the keto form is predicted to be of lowest energy, which can partly be attributed to hydrogen bonding through the oximino nitrogen. In the nitro derivative, however, the preference to form a six membered ring owing to O–H–O hydrogen-bonded interactions makes the anti conformer (keto) the stablest. Further one of the nitrosophenol conformers of nitrolawsoneoxime turns out to be very close in energy (0.21 kJ mol^–1 higher) to this anti conformer. The consequences of hydrogen bonding on charge distribution and vibrational spectra are discussed.     

Structure and conformational dynamics of the dicyclopropyl ketone in the ground electronic state

Geometric parameters, harmonic and anharmonic vibrational frequencies, conformer energy differences and barriers to internal rotation were obtained for dicyclopropyl ketone (DCPK) in the ground electronic state through MP2, DFT, CCSD and CCSD(T) calculations. VFPA was used to improve the estimations of conformer energy differences and heights of barriers to internal rotation. The ab initio calculations demonstrated that there are three stable conformations of DCPK: the cis–cis, the cis–trans and the gauche–gauche. The energy of the gauche–gauche conformer is noticeably higher than the energy of the two other conformers, so this conformer was not found experimentally. To study the conformational dynamics of the DCPK molecule, one- and two-dimensional sections of the potential energy surface corresponding to the rotations of the cyclopropyl groups were calculated. These sections were used to calculate torsion transition energies and vibrational wave functions in anharmonic approach. It was found that there is a strong coupling of large-amplitude torsion motions in the area of the cis–cis and gauche–gauche conformers.     

Infrared spectra,vibrational assignment and ab initio calculations for 2,2,2-trifluoroethanimidamide

The infrared spectra of gaseous and solid 2,2,2-trifluoroethanimidamide, CF₃(NH₂)C=NH, have been recorded from 4000 to 80 cm^–1. A vibrational assignment for the normal modes is proposed based on group frequencies and normal coordinate calculations utilizing C₁ symmetry. The structures for both the cis [hydrogen atom of the =NH group is cis to the NH₂ group] and trans geometric isomers have been determined from ab initio Hartree-Fock gradient calculations employing the GAUSSIAN-82 program with the 3–21G basis set. The most stable conformer at this level of calculation is found to be a C₁, structure with a partially rotated CF₃ group and the hydrogen atom of the imine group trans to the NH₂ group. The calculated structural parameters have only very small differences between the conformers. Barriers to internal rotation for the NH₂ and CF₃ groups and vibrational frequencies have been calculated for the C₁ form. The results of this investigation are compared with similar data on some corresponding molecules.Taken in part from the thesis of T. G. Sheehan which was submitted to the Department of Chemistry in partial fulfillment of the Ph.D. degree, May 1990.     

The conformation and vibrational spectra of trans-1,4-dihalocyclohexanes: Part II. trans-1,4-Chlorobromocyclohexane and trans-1,4-chloroiodocyclohexane

The IR spectra of trans-1,4-chlorobromo- and trans-1,4-chloroiodocyclohexane were recorded in the region 4000–30 cm^?1 as solutes in various solvents, as KI and polyethylene pellets and as solids under high pressure (1–50 kbar at ambient temperature). Additional spectra of the melts, amorphous and annealed crystalline solids at 90 K and dichroism of oriented polycrystalline films were obtained above 200 cm^?1. Raman spectra of the compounds were recorded in the amorphous and crystalline states at 90 K, and polarization measurements were made in CCl₄ CS₂ and C₆H₆ solution.The title compounds existed as an equilibrium mixture of ee and aa conformers in solution, in the melts and in the amorphous solids at 90 K. When heated to temperatures in the region 165–195 K the amorphous solids apparently crystallized into a metastable form containing the aa conformer, while above 200 K the solids were converted to a stable crystal containing the ee conformer. Under high pressure the concentration of the aa conformer increased and this form was almost exclusively present at ca. 50 kbar nominal pressure.The fundamental frequencies for both conformers were assigned in terms of C_smolecular symmetry. An extensive normal coordinate analysis on six trans-1,4-dihalocyclohexanes was carried out using the overlay technique.     

DFT, FT-Raman, and FT-IR investigations of 1-cyclopropylpiperazine

FT-IR and FT-Raman spectra of 1-cyclopropylpiperazine (1cppp) are experimentally examined in the range 4000-200 cm^?1. The optimized geometric parameters, conformational equilibria, normal mode frequencies and corresponding vibrational assignments of 1cppp C₇H₁₄N₂ are theoretically examined by means of B3LYP hybrid density functional theory (DFT) with the 6–31++G(d,p) basis set. Based on the potential energy distribution (PED) reliable vibrational assignments are made and the thermodynamics functions, highest occupied and lowest unoccupied molecular orbitals (HOMO and LUMO) of 1cppp are predicted. Calculations are performed for four different conformations in two point groups of 1cppp in the gas phase. A comparison between the experimental and theoretical results indicates that the B3LYP method is able to provide satisfactory results for the prediction of vibrational frequencies, structural parameters, and assignments. Furthermore, the C _s (equatorial-equatorial) point group is found as the most stable conformer of 1cppp.     

Infrared and Raman Spectra,Conformational Stability,Ab Initio Calculations,and Vibrational Assignments for Cyclopropyldifluorosilane

The infrared (3200–30 cm^–1) spectra of gaseous and solid Cyclopropyldifluorosilane, c-C₃H₅SiF₂H, and the Raman spectra (3200–20 cm^–1) of the liquid with quantitative depolarization values and the solid have been recorded. Both the syn (cis) and skew (gauche) conformers have been identified in the fluid phases, but only the syn conformer remains in the solid. Variable temperature (–55 to –100°C) studies of the infrared spectra of the sample dissolved in liquid xenon have been carried out. From these data, the enthalpy difference has been determined to be 73 ± 10 cm^–1 (209 ± 29 cal mol^–1), with the syn conformer being the more stable rotamer, which is at variance with the predictions from ab initio calculations. A complete vibrational assignment is proposed for both conformers based on infared band contours, relative intensities, depolarization values, and group frequencies. The vibrational assignments are supported by normal coordinate calculations utilizing the force constants from ab initio MP2/6-31G* calculations. Utilizing the frequencies of the silicon–hydrogen sketch, the rm Si—H bond distances of 1.474 and 1.472 Å have been obtained for the syn and skew conformers, respectively. Complete equilibrium geometries have been determined for both rotamers by ab initio calculations employing the 6-31G* and 6-311 +G** basis sets at levels of restricted Hartree-Fock (RHF) and/or Moller–Plesset (MP) to second order. The potential energy terms for the conformer interconversion have been obtained from the MP2/6-31G* calculation. The results are discussed and compared to those obtained for some similar molecules.     

Substituted profanes: VII The vibrational spectra and conformations of 1,2,3-trichloro- and 1,2,3-tribromopropane

The infrared, far-infrared and Raman spectra of 1,2,3-trichloro- and 1,2,3-tribromopropane were recorded in the liquid state, in polar and non-polar solvents and in the crystalline state at low temperature. Crystals were formed under ca. 20 kbar pressure at ambient temperature and the infrared spectra recorded. Dipole measurements were carried out in CCl₄ and C₆H₆ solutions.The existence of three or possibly four conformers in the liquids at room temperature was verified. Combined with independent electron diffraction measurements of the vapours, the spectra demonstrated an anti-gauche conformer (relative to the halogens) to be present in the low temperature and high pressure crystals of both compounds. This conformer was not the one suggested by earlier authors. The C-halogen stretching vibrations for the conformers do not agree with the predicted values.     

The Role of Intramolecular Hydrogen Bonds vs. Other Weak Interactions on the Conformation of Hyponitrous Acid and Its Mono- and Dithio-Derivatives

High level ab initio and density functional theory calculations have been carried out to investigate the relative stability of the different conformers of hyponitrous acid and its mono- and dithio-derivatives. Geometries and vibrational frequencies were obtained at the B3LYP/6-311+G(d,p) level and final energies through B3LYP/6-311++G(3df,2pd) single point calculations. The reliability of this theoretical scheme has been assessed by comparing these DFT results with those obtained at the G3 level of theory, for some suitable cases. The cis conformers of hyponitrous acid and its mono- and dithio-derivatives are systematically more stable than the trans ones because in the cis conformation a dative interaction between the nitrogen-lone pairs and the σ_NX^* antibonding orbital is significantly favored. Quite interestingly, in general, the conformers presenting an intramolecular hydrogen bond (IHB) are not the global minima of the corresponding potential energy surfaces and only for hyponitrous acid the conformer with a OH ⋅s O IHB is slightly more stable than the cis conformer without IHB. The low stability of the tautomers with IHB is closely related with another weak intramolecular interaction which involves the lone-pairs of the chalcogen atoms and the π_NN^* antibondig orbital, and which is significantly perturbed when the IHB is formed.     

Vibrational spectra of 1-chloro-2-methylpropane and 1-chloro-2,2-dimethylpropane

Infrared and Raman spectra are obtained for 1-chloro-2-methylpropane and 1-chloro-2,2-dimethylpropane. The former compound exists as a mixture of P_C and P_H' conformers in the liquid and unannealed solid states, but only the P_C conformer is present in the crystalline solid. Vibrational assignments are made for both conformers of 1-chloro-2-methylpropane and for 1-chloro-2,2-dimethylpropane with the aid of normal coordinate calculations.