Studies of the dissociation and the protonation of TB-chlorosulphophenol

The dissociation constant of each step for TB-chlorosulphophenol has been determined by potentiometric method, and the thermodynamic constants, △G°, △H° and △S°, of the dissociation process have been calculated. The protonation constants were measured by the spectrophotometric method. The pH values of various forms of anions of the chromogenic reagent at their concentrations were also calculated.     

Characterization of γ-carboxylated tryptic peptides by collision-induced dissociation and electron transfer dissociation mass spectrometry

Vitamin K-dependent carboxylation of glutamic acid (Glu) residues into γ-carboxyglutamic acid (Gla) is a post-translational modification essential for normal protein activity of, for example, proteins involved in the blood coagulation system. These proteins may contain as many as 12 sites for γ-carboxylation within a protein sequence of 45 amino acid residues. In the biopharmaceutical industry, powerful analytical techniques are required for identification and localization of modified sites. We here present comparatively easy and rapid methods for studies of Gla-containing proteins using recent technology. The performances of two mass spectrometric fragmentation techniques, collision-induced dissociation (CID) and electron transfer dissociation (ETD), were evaluated with respect to γ-carboxylated peptides, applying on-line LC-ion trap MS. ETD MS has so far not been reported for Gla-containing peptides and the applicability of CID for heavily γ-carboxylated proteins has not been evaluated. The anticoagulant protein, protein C, containing nine Gla-sites, was chosen as a model protein. After tryptic digestion, three peptides containing Gla-residues were detected by MS; a 1.2 kDa fragment containing two Gla-residues, a 4.5 kDa peptide containing seven residues and also the 5.6 kDa tryptic peptides containing all nine Gla-residues. Regarding the shortest peptide, both CID and ETD provided extensive peptide sequencing. For the larger peptides, fragmentation by CID resulted in loss of the 44 Da CO(2)-group, while little additional fragmentation of the peptide chain was observed. In contrast, ETD resulted in comprehensive fragmentation of the peptide backbone. The study demonstrates that the combination of both techniques would be beneficial and complementary for investigation of γ-carboxylated proteins and peptides.     

Spectroscopy and dissociation of I<Subscript>2</Subscript>–Rg (Rg = Kr and Xe) van der Waals complexes

The spectroscopy and dissociation of I₂–Rg (Rg = Kr and Xe) van der Waals complexes have been studied in detail using MP2 and CCSD(T) methods in conjunction with the correlation-consistent triple-ζ and quadruple-ζ quality basis sets. The large-core Stuttgart–Dresden–Bonn (SDB) relativistic pseudopotential is used for all heavy elements. The dissociation energy and depth of the potential well have been calculated using potential method and supermolecular approach in order to remove the discrepancy among the existing theoretical and experimental values. Most of the spectroscopic properties are first reported, and the rest agree very well with the theoretical and experimental values wherever available.     

Standard enthalpies of formation of γ-aminobutyric acid and the products of its dissociation in aqueous solution

Heat effects of the dissolution of crystalline γ-aminobutyric acid in water and potassium hydroxide solutions are determined by direct colorimetry at 298.15 K. Standard enthalpies of formation of γ-aminobutyric acid and the products of its dissociation in aqueous solution are calculated.     

Standard enthalpies of formation of α-aminobutyric acid and products of its dissociation in an aqueous solution

Heats of solution of crystalline α-aminobutyric acid in water and in aqueous solutions of potassium hydroxide at 298.15 K are measured by means of direct calorimetry. Standard enthalpies of formation of the amino acid and products of its dissociation in an aqueous solution are calculated.     

The Ã-state dissociation continuum of NO-Ar and its near infrared spectrum

After preparing NO-Ar in a vibrational state correlating with the first overtone vibration in NO, we recorded its hot band UV spectrum by monitoring simultaneously the intensity in the NO(+) and the NO(+)-Ar ion channels. In this way, the bound as well as the continuous part of the electronic A?←X? spectrum are observed directly. Below the dissociation threshold, the intensity is found exclusively in the NO(+)-Ar ion channel while above it is found in the NO fragment ion channel. We observe simultaneously intensity in both ion channels only for a very narrow frequency range near the dissociation threshold. Structures in the dissociation spectrum correlate well with the thresholds for production of NO(A) in different rotational states. At frequencies well above the dissociation threshold, NO-Ar is detected efficiently as a NO fragment. This fact has been exploited to record the near IR spectrum of NO-Ar with significantly increased sensitivity. The dissociation detected spectra are essentially identical to our previous constant photon energy sum (CONPHOENERS) scans [B. Wen, Y. Kim, H. Meyer, J. K?os, and M. H. Alexander, J. Phys. Chem. A 112, 9483 (2008)]. Several hot band spectra have been remeasured with improved sensitivity enabling a comprehensive analysis yielding for the first time spectroscopic constants for levels associated with the potential surfaces of NO-Ar correlating with NO(v(NO) = 0 and 2). Since many NO-X complexes do not have a strong bound A?-state spectrum, although they do have a A?-state dissociation continuum, there is the possibility to record their near IR spectra by employing dissociation detection.     

Thermodynamics, kinetics, and photochemistry of β-strand association and dissociation in a split-GFP system

Truncated green fluorescent protein (GFP) that is refolded after removing the 10th β-strand can readily bind to a synthetic strand to recover the absorbance and fluorescence of the whole protein. This allows rigorous experimental determination of thermodynamic and kinetic parameters of the split system including the equilibrium constant and the association/dissociation rates, which enables residue-specific analysis of peptide-protein interactions. The dissociation rate of the noncovalently bound strand is observed by strand exchange that is accompanied by a color change, and surprisingly, the rate is greatly enhanced by light irradiation. This peptide-protein photodissociation is a very unusual phenomenon and can potentially be useful for introducing spatially and temporally well-defined perturbations to biological systems as a genetically encoded caged protein.     

Preparation,characterization and determination of acid dissociation and stability constants of some acid divalent-metal 1 : 2 nitrilotriacetate complexes

H₂[M^II(HNTA)₂]·xH₂O complexes of eleven divalent metals were prepared. These complexes were characterized via elemental analysis, IR spectra, TGA, DTA and ¹H NMR. pKa₁ and pKa₂ of these acids were determined together with their log?β ₁ and log?β ₂ as metal complexes.     

Thermodynamics of the dissociation of aminomethanesulfonic acid and its <Emphasis Type="Italic">N</Emphasis>-substituted derivatives in aqueous solutions at 293–313 K

ΔG, ΔH, and ΔS of the second dissociation step of aminomethanesulfonic acid and its N-methyl, N-hydroxyethyl, N-(tert-butyl), N-benzyl derivatives in aqueous solutions (at the isoelectric point where the ionic strength is 4.75 × 10^–4 М) are determined on basis of pH measurements at 293–313 K. It is found that an increase of the electron-acceptor properties of the substituents at nitrogen atom reduces the effect temperature has on the thermodynamic functions of dissociation. Enthalpy–enthropy compensation at an isothermodynamic temperature of 303 K is recorded.     

Theoretical study of the substituent effects on structure and dissociation of RNSi and RSiN (R = H, Li)

The effects of substituent on stability, structural properties and dissociation of HSiN, LiSiN and their isomers have been studied in detail using ab initio MP2, CCSD and CCSD(T) and density functional B3LYP methods. After dissociation of HNSi, LiNSi, HSiN and LiSiN, the fragmented atoms have been considered to be either in their ground state or in their valence excited state in various dissociation channels. Only allowed dissociations of these molecules are considered. Various dissociation channels of HSiN and LiSiN and their isomers have been explored and an interesting trend has been observed for the dissociation of stable isomers HNSi and LiNSi and less stable isomers HSiN and LiSiN. The effect of substituents on dipole moment has been discussed. The potential energy surfaces for the RSiN ↔ RNSi isomerization reactions have been analyzed. The structural properties of these molecules agree well with the theoretical and experimental values wherever available.     

Thermodynamic properties of o-phthalic acid and its products of dissociation at 0–200°C and 1–5000 bar

Values of the pH for four solutions in a KHPh-HCl-KOH system, where Ph denoting C₈O₄H₄, are measured at 25–70°C depending on pressure (1–1000 bar). The experimental results and the available literature data are processed on the base of Helgeson-Kirkham-Flowers (HKF) equation of state [1] and the GIBBS, OptimA, and OptimB programs from the HCh software package [2]. The obtained standard thermodynamic properties and HKF parameters of H₂Ph_aq, HPh^?, and Ph^2? aqueous species, provides calculation of the pH of phthalate buffers in a wide range of temperatures (up to 200°C) and pressures (up to 5 kbar). The calculated values for the biphthalate buffer (0.05m KHPh) correspond to the IUPAC recommendations (at 0–50°C and 1 bar) with an accuracy of 0.005 pH units, and to the values of pH measured in this study at elevated Tp parameters (25–70°C and pressures of up to 1 kbar) within the limits of ±0.02 pH units.     

Can mass dissociation patterns of transition‐metal complexes be predicted from electrochemical data?

The Cooks kinetic method has been very convenient to correlate the relative dissociation rates obtained by collision-induced fragmentation experiments with the energies of two related bonds in molecules and complexes in the gas phase. Reliable bond energy data are, however, not always available, particularly for polynuclear transition-metal complexes, such as the triruthenium acetate clusters of the general formula [Ru(3) (micro(3)-O)(micro-CH(3)COO)(6)(py)(2)(L)](+), where L = ring substituted N-heterocyclic ligands. Accordingly, their gas-phase collision-induced tandem mass spectrometry (CID MS/MS) dissociation patterns have been analyzed pursuing a relationship with the more easily accessible redox potentials (E(1/2)) and Lever's E(L) parameters. In fact, excellent linear correlations of ln(1/2A(L)/A(py)), where A(py) and A(L) are the abundance of the fragments retaining the pyridine (py) and L ligand, respectively, with E(1/2) and E(L) were found. This result shows that those electrochemical parameters are correlated with bond energies and can be used in the analysis of the dissociation data. Such modified Cooks method can be used, for example, to determine the electronic effects of substituents on the metal-ligand bonds for a series of transition-metal complexes.     

Dispersity and kinetic characteristics of dissociation of mono- and hemiaquo adducts of copper N,N′-ethylenebis(acetylacetoniminate) under nonisothermal conditions

Using optical microscopy and thermogravimetry, we have established that determination of the kinetic characteristics of dissociation for the monoaquo adduct of copper N,N-ethylene-bis(acetylacetoniminate) with particle size 0.5–2 mm is hindered by self-dispersal processes. Using a piezoquartz microbalance, we have obtained the kinetic parameters for thermolysis for a phase whose crystal sizes are substantially smaller than the minimal size after self-dispersal of a block of a large crystal (0.5–2 m). For thermolysis of the hemiaquo adduct not accompanied by self-dispersal, the kinetic characteristics of the process for phases of dispersity 0.5–2 mm and 0.5–2 m are comparable.Translated from Teoreticheskaya i Éksperimental'naya Khimiya, Vol. 28, No. 3, pp. 226–231, May–June, 1992.     

Electron-capture—Induced dissociation of protoporphyrin IX ions

Electron-capture induced dissociation of protoporphyrin cations and anions has been studied. The cations captured two electrons in two successive collisions and were converted to the corresponding even-electron anions. About one fifth of the ions lost a hydrogen atom to become radical anions but otherwise very little fragmentation was observed. The anions captured an electron to become dianions. No hydrogen loss occurred, and the only fragmentation channel observed was loss of CO2H, to give a doubly charged carbanion. Our results indicate that protoporphyrin ions are very efficient in accommodating one or even two electrons in the lowest unoccupied molecular orbital of the porphyrin macrocycle, and that electron capture induces only limited dissociation.     

PCM study of the solvent and substituent effects on bond dissociation energies of the O?NO Bond—A DFT study

A PCM continuum model, at the B3LYP, B3P86, and B3PW91 three‐parameter hybrid DFT methods with 6‐311G** basis set, is used to study the bond dissociation energies (BDEs) of benzyl nitrites. Compared the computed results with the experimental values, it is noted that B3PW91 functional is the best method to compute the BDEs of benzyl nitrites. The solvent and substituent effects on the BDEs of the O? NO bond are analyzed, and it is shown that the BDE of the O? NO bond decreases with the increment of the Hammett constants of substituent groups on benzene for benzyl nitrites except C₆H₅CH₂O? NO. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2012     

The photochemistry of formaldehyde: internal conversion and molecular dissociation in a single step?

A novel, nonadiabatic reaction path for H2 + CO molecular dissociation of formaldehyde via an extended S1/S0 conical intersection seam has been mapped out using the CAS-SCF method with a full valence active space (10 electrons, 9 orbitals). Two conical intersection geometries have been optimized, CsCoIn, a saddle point in the intersection space, and C1CoIn, which is the lowest-energy crossing point. A minimum-energy path connecting these points along a seam has also been characterized. In addition to the conventional and "roaming-atom" mechanisms--where internal conversion takes place before ground-state dissociation--we suggest that a strictly nonadiabatic mechanism can operate, where internal conversion and dissociation take place in concert.     

CO product distribution in the unimolecular dissociation of HCO

The unimolecular dissociation of HCO ground state was investigated with the time-dependent full-quantum symplectic propagation based on the newest potential energy surface of the system. Calculated energy and widths of HCO resonance states agree well with those in the literature. CO product distribution was systematically investigated. A simple model was presented to interpret the rovibrational distributions in HCO dissociation.     

Primary photochemistry of nitrated aromatic compounds: excited-state dynamics and NO· dissociation from 9-nitroanthracene

We report results of femtosecond-resolved ex-periments which elucidate the time scale for the primary photoinduced events in the model nitroaromatic compound 9-nitroanthracene. Through time-resolved fluorescence measurements, we observed the ultrafast decay of the initially excited singlet state, and through transient absorption experiments, we observed the spectral evolution associated with the formation of the relaxed phosphorescent T(1) state. Additionally, we have detected for the first time the accumulation of the anthryloxy radical which results from the nitro-group rearrangement and NO(?) dissociation from photoexcited 9-nitroanthracene, a photochemical channel which occurs in parallel with the formation of the phosphorescent state. The spectral evolution in this molecule is highly complex since both channels take place in similar time ranges of up to a few picoseconds. Despite this complexity, our experiments provide the general time scales in which the primary products are formed. In addition, we include calculations at the time-dependent density functional level of theory which distinguish the molecular orbitals responsible for the n-π* character of the "receiver" vibronic triplet states that couple with the first singlet state and promote the ultrafast transfer of population between the two manifolds. Comparisons with the isoelectronic compounds anthracene-9-carboxylic acid and its conjugated base, which are highly fluorescent, show that in these two compounds the near-isoenergeticity of the S(1) with an appropriate "receiver" triplet state is disrupted, providing support to the idea that a specific energy coincidence is important for the ultrafast population of the triplet manifold, prevalent in polycyclic nitrated aromatic compounds.     

Generation of peptide radical dications via low-energy collision-induced dissociation of [Cu<Superscript>II</Superscript>(terpy)(M + H)]<Superscript>·3+</Superscript>

The first example of the formation of hydrogen-deficient radical cations of the type [M + H](.2+) is demonstrated to occur through a one-electron-transfer mechanism upon low-energy collision-induced dissociation (CID) of gas-phase triply charged [Cu(II)(terpy)(M + H)](.3+) complex ions (where M is an angiotensin III or enkephalin derivative; terpy = 2,2':6',2'-terpyridine). The collision-induced dissociation of doubly charged [M + H](.2+) radical cations generates similar product ions to those prepared through hot electron capture dissociation (HECD). Isomeric isoleucine and leucine residues were distinguished by observing the mass differences between [z(n) + H](.+) and w(n)(+) ions (having the same residue number, n) of the Xle residues. The product ion spectrum of [z(n) + H](.+) reveals that the w(n)(+) ions are formed possibly from consecutive fragmentations of [z(n) + H](.+) ions. Although only the first few [M + H](.2+) species have been observed using this approach, these hydrogen-deficient radical cations produce fragment ions that have more structure-informative patterns and are very different from those formed during the low-energy tandem mass spectrometry of protonated peptides.     

Theoretical study of spectroscopy,interaction, and dissociation of linear and T-shaped isomers of RgClF (Rg = He,Ne, and Ar) van der Waals complexes

Spectroscopy, interaction energy, and dissociation of linear and T-shaped isomers of HeClF, NeClF, and ArClF van der Waals complexes in their ground state have been studied in detail using MP2 and CCSD(T) methods in conjunction with correlation consistent valence triple and quadruple zeta basis sets. A method, called potential method, has been developed to remove the discrepancy between theoretical and experimental values for the depth of the potential well and dissociation energies for these complexes. This is also supported by the supermolecular approach. Most of the structural and spectroscopic properties of these complexes are first reported and the rest agree very well with the experimental and theoretical values wherever available. Two local minima corresponding to linear and asymmetric T-shaped are found for RgClF complexes. For NeClF complex, the predicted values for the equilibrium bond length and well depth are R _NeCl = 3.096 Å and \( D_{\text{e}}^{\text{p}} \) = 161.50 cm^?1 for the linear isomer and R _NeCl = 3.503 Å and \( D_{\text{e}}^{\text{p}} \) = 126.10 cm^?1 for the T-shaped isomer. Various dissociation channels are also investigated in detail.