Comparison of systematically functionalized heterogeneous and homogenous glycopolymers as toxin inhibitors

Multivalent glycosylated polymers and particles display enhanced binding affinity toward lectins compared to individual glycans. The design of glycopolymers with selectivity toward pathogen‐associated lectins (toxins) for sensing or in antiadhesion therapy is complicated due to lectins having promiscuous binding profiles and can be considered to be pattern recognition “readers,” with the capability to bind to several different glycans. Here, heterogeneous glycopolymers bearing variable densities of two different monosaccharides are synthesized by a three‐step postpolymerization modification approach, enabling systematic control over composition. It is found that heterogeneous polymers displayed increased inhibitory activity, compared to homogeneous polymers, against a RCA₁₂₀ and the cholera toxin. This demonstrates that embracing heterogeneity in glycomaterials could result in improved performance or emergent properties. © 2018 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2019 , 57, 40–47     

Controlled block glycopolymers able to bind specific proteins

The syntheses of a variety of amphiphilic block glycopolymers based on 2‐{[(D ‐glucosamin‐2‐N‐yl)carbonyl]oxy}ethyl acrylate and n‐butyl acrylate or methyl methacrylate by single‐electron transfer‐living radical polymerization (SET‐LRP) are described. In a first step, the homopolymerization of unprotected acrylic glycomonomer to obtain well‐controlled glycopolymers is studied. Posterior and based on these studies, di‐ and triblock glycopolymers were synthesized via SET‐LRP of the glycomonomer from different hydrophobic blocks, varying the hydrophilic block lengths. All the copolymers are characterized by nuclear magnetic resonance spectroscopy and GPC. Moreover, their water solution behavior by dynamic light scattering and their capacity of interaction with Concanavalin A lectin by turbidimetry are analyzed. The effect on the block glycopolymers behavior of hydrophobic block nature and the length of glycopolymer segments is evaluated. © 2012 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2013     

Synthesis of poly(oxyethylene phosphoramidate)s and glycopolymers via Staudinger reaction: Multivalent binding studies with Concanavalin A

A new method for the preparation of poly(oxyethylene phosphoramidate)s and glycopolymers is developed via modification of poly(oxyethylene H‐phosphonate) which is a biodegradable, biocompatible and low toxic polymer. The phosphonate groups of the precursor are converted into tri‐coordinated phosphorus species yielding poly(oxyethylene trimethylsilyl phosphite). The latter is then reacted with different azides, including sugar azides, via Staudinger reaction to furnish the desired poly(oxyethylene phosphoramidate)s and such containing sugar moieties in the side chains attached to the P‐centers. 2002P NMR spectroscopy is applied as a powerful tool for determination of the conversion and structure of the reaction products. Studies on Concanavalin A binding to the obtained glycopolymers are performed using dynamic light scattering and analytical ultracentrifugation techniques. The viability of Human Embryonic Kidney 293 cell line is slightly affected when exposed to polyphosphoramidate glucoconjugate over a broad range of concentrations. The results obtained are encouraging for further investigations on the clustering and bio‐recognition properties of the synthesized glycopolymers. © 2017 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2017 , 55, 1730–1741     

Synthesis and biological application of glycopolymers

Saccharides on the cell surfaces participate in a number of biochemical phenomena via the protein–saccharide interaction. Synthetic glycopolymers mimic the function of the cell‐surface saccharides and efficiently interact with proteins, cells, and pathogens based on the multivalent effect. Since the biological functions of saccharides are paid much attention, the glycopolymers are being increasingly explored as biomaterials for medicinal application and tissue engineering. This review presents a practical approach of glycopolymers. The glycopolymers were prepared by the facile syntheses of poly(vinyl saccharide)s and the physical and biological properties were introduced. © 2007 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 45: 5031–5036, 2007     

Protecting‐group‐free synthesis of glycopolymers bearing thioglycosides via one‐pot monomer synthesis from free saccharides

Polyacrylamides having pendant thioglycosides were successfully synthesized from thioglycosidic monomers that were readily prepared by one‐pot method without any protection of the hydroxy groups on the starting free saccharides. The glycomonomers were synthesized by the direct synthesis of thioglycosides using 2‐chloro‐1,3‐dimethylimidazolinium chloride and 4‐aminobenzentiol, and the following acrylamidation. They were co‐polymerized with acrylamide into glycopolymers by reversible addition‐fragmentation chain transfer polymerization using a trithiocarbonate derivative as a chain transfer agent. The gold nanoparticles and gold‐coated quartz crystal microbalance sensor immobilized with the thiol‐terminated glycopolymers exhibited high affinity for the corresponding lectins due to multivalent interaction between saccharides and protein in aqueous solution. © 2014 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2014 , 52, 3513–3520     

Novel well‐defined glycopolymers synthesized via the reversible addition fragmentation chain transfer process in aqueous media

We describe here the direct synthesis of novel gluconamidoalkyl methacrylamides by reacting D ‐gluconolactone with aminoalkyl methacrylamides. The glycomonomers were then successfully polymerized via the reversible addition‐fragmentation chain transfer process (RAFT) using 4‐cyanopentanoic acid dithiobenzoate (CTP) as chain transfer agent and 4,4′‐azobis(4‐cyanovaleric acid) (ACVA) as the initiator in aqueous media. Well‐defined polymers were obtained as revealed by gel permeation chromatography. Diblock copolymers were then synthesized by the macro‐CTA approach. The cationic glycopolymers were subsequently used in the formation of nanostructures via the complexation with plasmid DNA. As noted by dynamic light scattering, monodisperse nanoparticles were obtained via the electrostatic interaction of the cationic glycopolymer with DNA. The sizes of the nanoparticles formed were found to be stable and independent of pH. In vitro cell viability studies of the glycopolymers were carried out using HELA cell lines. The RAFT synthesized glycopolymers and cationic glyco‐copolymers revealed to be nontoxic. © 2008 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 47: 614–627, 2009     

Influencing receptor-ligand binding mechanisms with multivalent ligand architecture

Multivalent ligands can function as inhibitors or effectors of biological processes. Potent inhibitory activity can arise from the high functional affinities of multivalent ligand-receptor interactions. Effector functions, however, are influenced not only by apparent affinities but also by alternate factors, including the ability of a ligand to cluster receptors. Little is known about the molecular features of a multivalent ligand that determine whether it will function as an inhibitor or effector. We envisioned that, by altering multivalent ligand architecture, ligands with preferences for different binding mechanisms would be generated. To this end, a series of 28 ligands possessing structural diversity was synthesized. This series provides the means to explore the effects of ligand architecture on the inhibition and clustering of a model protein, the lectin concanavalin A (Con A). The structural parameters that were varied include scaffold shape, size, valency, and density of binding elements. We found that ligands with certain architectures are effective inhibitors, but others mediate receptor clustering. Specifically, high molecular weight, polydisperse polyvalent ligands are effective inhibitors of Con A binding, whereas linear oligomeric ligands generated by the ring-opening metathesis polymerization have structural properties that favor clustering. The shape of a multivalent ligand also influences specific aspects of receptor clustering. These include the rate at which the receptor is clustered, the number of receptors in the clusters, and the average interreceptor distance. Our results indicate that the architecture of a multivalent ligand is a key parameter in determining its activity as an inhibitor or effector. Diversity-oriented syntheses of multivalent ligands coupled with effective assays that can be used to compare the contributions of different binding parameters may afford ligands that function by specific mechanisms.     

Breath figures method to control the topography and the functionality of polymeric surfaces in porous films and microspheres

Polymeric films with porous structures and microsphere patterns were prepared by the method of breath figures, mixing poly(methyl methacrylate) (PMMA) and amphiphilic copolymers containing glucose moieties in their structure, glycopolymers. Statistical and block glycopolymers were used in a proportion of 10 wt %. The statistical glycopolymers were synthesized via conventional free radical copolymerization, whereas the block copolymer of methyl methacrylate and 2‐{[(D ‐glucosamin‐2‐Nyl) carbonyl]oxy}ethyl methacrylate, PMMA‐b‐PHEMAGl, was obtained by atom transfer radical polymerization. Glycopolymers were blended with a high molecular weight PMMA matrix and dissolved in a mixture of tetrahydrofuran and a small amount of water. Results showed that, depending on experimental conditions (water content, humidity, and type of copolymer), the observed final film morphology changes significantly. Thus, films with honeycomb pattern structures, spherical particles, or a mixture of both were obtained. In addition, polar glucose moieties were oriented principally either inside of the pores in the case of films and towards the surface in the case of particles. The specific surface bioactivity of these materials was examined using the specific lectin concanavalin A conjugated with fluorescein, Con A‐FITC. The successful binding of the Con A was demonstrated by fluorescence microscopy being more intense at the surface of the pores and of the particles. © 2011 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2012     

Glycopolymers resulting from ethylene–vinyl alcohol copolymers: Synthetic approach,characterization, and interactions with lectins

Ethylene–vinyl alcohol copolymers, EVOH, with two different vinyl alcohol compositions have been functionalized with carboxylic acid groups by reaction with phthalic anhydride. Later on, the coupling reaction of three aminosaccharides (D ‐(+)‐glucosamine, D ‐(+)‐galactosamine, and D ‐(+)‐mannosamine) to functionalized EVOH copolymers has been carried out in dimethyl sulfoxide at 70 °C to achieve water soluble glycopolymers. The structure of the resulting functionalized copolymers and the new glycopolymers was confirmed by ¹H and ¹³C NMR. Likewise, the thermal behavior of glycopolymers has been performed by differential scanning calorimetry and thermal gravimetric analysis. In addition, their affinity to lectins, specifically to Concanavalin A and Ricinus Communis Agglutinin, has been evaluated. © Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 46: 7238–7248, 2008     

Exploiting Free‐Energy Minima to Design Novel EphA2 Protein–Protein Antagonists: From Simulation to Experiment and Return

The free‐energy surface (FES) of protein–ligand binding contains information useful for drug design. Here we show how to exploit a free‐energy minimum of a protein‐ligand complex identified by metadynamics simulations to design a new EphA2 antagonist with improved inhibitory potency.     

Polymer-tethered ligand–receptor interactions between surfaces

We study the interaction between two parallel surfaces having a polymer-tethered ligand on one and a random distribution of receptors on the other. We examine the interplay between the specific ligand–receptor binding and the conformation degrees of freedom of the polymer tether, and address the difference between the cases of mobile (annealed) and immobile (quenched) receptors. The annealed case is solved exactly and the quenched case is treated by both Monte Carlo direct sampling and an analytical density expansion. The combination of the entropic repulsion due to chain confinement at small surface separations, and the attraction due to ligand–receptor binding which can take place at significant chain stretching, results in a minimum in the interaction free energy. For the same set of parameters, stronger binding is obtained for the annealed case than for the quenched case, reflecting the ability of the mobile receptors to migrate into the region of the ligand. In the quenched case, binding is limited by the availability of receptors within the reach of the ligand; for a given receptor density and binding energy, there exists an optimal chain length that yields the lowest minimum in the interaction free energy for the quenched case. © 2006 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 44: 2621–2637, 2006     

Synthesis and characterization of poly(vinyl amine)‐based amphiphilic comb‐like dextran glycopolymers by a two‐step method

Poly(vinyl amine) (PVAm)‐based amphiphilic glycopolymers were synthesized by a two‐step method, that is dextran molecules (Dex, M_w = 1500) were attached to the PVAm backbone by reacting amine groups with dextran lactone, and then, hexanoyl groups (Hex) were attached by reacting the PVAm free amine groups with N‐(hexanoyloxy)succinimide. By adjustment of the feed ratios of Dex/Hex, amphiphilic comb‐like glycopolymers with various hydrophilic and hydrophobic balances were prepared, and their structures were characterized by ¹H NMR. Surface activity of the amphiphilic glycopolymers at the air/water interface was demonstrated by reduction in water surface tension. Adsorption of the amphiphilic glycopolymers at the solid/water interface was examined on octadecyltrichlorosilane (OTS)‐coated coverslips by water contact angle measurements. The results show that the amphiphilic glycopolymers need about 20 mol % of dextran attachment to make an effective hydrophilic coating. In comparison with the one‐step reaction by addition of dextran lactone and alkyl succinimide simultaneously, the two‐step approach can attach Dex on PVAm as high as possible in the first step, and offers quantitative advantages in controlling the ratio of hydrophilic and hydrophobic chains along the PVAm backbone, resulting in increased water solubility for the final amphiphilic glycopolymers. © 2005 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 44: 192–199, 2006     

Nonspanning bivalent ligands as improved surface receptor binding inhibitors of the cholera toxin B pentamer

A series of bivalent ligands of varying length were synthesized to inhibit the receptor-binding process of cholera toxin. Competitive surface receptor binding assays showed that significant potency gains relative to the constituent monovalent ligands were achieved independently from the ability of the extended bivalent ligands to span binding sites within the toxin pentamer. Several models that could account for the unexpected improvement in IC(50) values are examined, taking into account crystallographic analysis of each ligand in complex with the toxin pentamer. Evidence is presented that steric blocking at the receptor binding surface may play a role. The results of our study suggest that the use of relatively short, "nonspanning" bivalent ligands, or monovalent ligands of similar topology and bulk may be an effective way of blocking the interaction of multimeric proteins with their cell surface receptors.     

A Blocking Group Scan Using a Spherical Organometallic Complex Identifies an Unprecedented Binding Mode with Potent Activity In Vitro and In Vivo for the Opioid Peptide Dermorphin

Herein, the selective enforcement of one particular receptor‐ligand interaction between specific domains of the μ‐selective opioid peptide dermorphin and the μ opioid receptor is presented. For this, a blocking group scan is described which exploits the steric demand of a bis(quinolinylmethyl)amine rhenium(I) tricarbonyl complex conjugated to a number of different, strategically chosen positions of dermorphin. The prepared peptide conjugates lead to the discovery of two different binding modes: An expected N‐terminal binding mode corresponds to the established view of opioid peptide binding, whereas an unexpected C‐terminal binding mode is newly discovered. Surprisingly, both binding modes provide high affinity and agonistic activity at the μ opioid receptor in vitro. Furthermore, the unprecedented C‐terminal binding mode shows potent dose‐dependent antinociception in vivo. Finally, in silico docking studies support receptor activation by both dermorphin binding modes and suggest a biological relevance for dermorphin itself. Relevant ligand‐protein interactions are similar for both binding modes, which is in line with previous protein mutation studies.     

Controlled synthesis of new amphiphilic glycopolymers with liquid crystal grafts

A cholesterol‐based liquid crystal monomer, diethylene glycol cholesteryl ether acrylate (DEGCholA), has been successfully polymerized by atom transfer radical polymerization (ATRP) for the first time. Appropriate experimental conditions to control the polymerization of DEGCholA have been investigated using a model initiator (ethyl 2‐bromoisobutyrate) in tetrahydrofuran (THF) or toluene at 60 °C. Well‐controlled ATRP of DEGCholA was obtained using N,N,N′,N′,N″‐pentamethyldiethylenetriamine as ligand in THF at 60 °C. These conditions were then applied to initiate the ATRP of DEGCholA from multifunctional macroinitiators based on dextran. Using a protection/deprotection synthetic scheme, novel graft glycopolymers (Dex‐g‐PDEGCholA) have been synthesized. The mesomorphic properties of DEGCholA, PDEGCholA, and Dex‐g‐PDEGCholA have been studied by thermal polarizing optical microscopy, differential scanning calorimetry, and X‐ray scattering. PDEGCholA and Dex‐g‐PDEGCholA show an interdigitated smectic A phase (SmA_d) between T_g (～30 °C) and around 170 °C. © 2013 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2013 , 51, 3829–3839     

RAFT polymerization and thio‐bromo substitution: An efficient way towards well‐defined glycopolymers

Despite an increasing effort to design well‐defined glycopolymers, the convenient synthesis of polymers with higher DPs (>100) and without tedious protection and deprotection steps remains a challenge. Combining the reversible addition fragmentation transfer (RAFT) polymerization and the efficient substitution of primary bromo groups by thiols, we were able to synthesize a set of well‐defined glycopolymers with DPs of up to 115. With the polymerization of the highly reactive monomer (2‐bromoethyl)‐acrylate polymers with low dispersities were obtained that could efficiently be functionalized with various sugar thiol(ate)s. In particular, derivatives of d ‐glucose, d ‐galactose, and d ‐mannose gave excellent degrees of functionalization close to quantitative conversion using only a slight excess of the thiol. This atom efficient synthesis can even be applied for copolymers with acid or base labile components due to the use of unprotected sugar moieties and, hence, the lack of further deprotection steps. Binding studies with the lectin concanavalin A and the subsequent competition studies with α‐d ‐methyl‐mannopyranose (αMeMan) proved the effective binding of these derivatives and revealed a DP‐ and carbohydrate‐dependent clustering and dissolution. © 2017 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2017 , 55, 3617–3626     

Binding affinity of substituted ureido‐benzenesulfonamide ligands to the carbonic anhydrase receptor: A theoretical study of enzyme inhibition

The binding properties of a series of benzenesulfonamide inhibitors (4‐substituted‐ureido‐benzenesulfonamides, UBSAs) of human carbonic anhydrase II (hCA II) enzyme with active site residues have been studied using a hybrid quantum mechanical/molecular mechanical (QM/MM) model. To account for the important docking interactions between the UBSAs ligand and hCA II enzyme, a molecular docking program AutoDock Vina is used. The molecular docking results obtained by AutoDock Vina revealed that the docked conformer has root mean square deviation value less than 1.50 Å compared to X‐ray crystal structures. The inhibitory activity of UBSA ligands against hCA II is found to be in good agreement with the experimental results. The thermodynamic parameters for inhibitor binding show that hydrogen bonding, hydrophilic, and hydrophobic interactions play a major role in explaining the diverse inhibitory range of these derivatives. Additionally, natural bond orbital analysis is performed to characterize the ligand–metal charge transfer stability. The insights gained from this study have great potential to design new hCA‐II inhibitor, 4‐[3‐(1‐p‐Tolyl‐4‐trifluoromethyl‐1H‐pyrazol‐3‐yl)‐ureido]‐benzenesulfonamide, which belongs to the family of UBSA inhibitors and shows similar type of inhibitor potency with hCA II. This work also reveals that a QM/MM model and molecular docking method are computationally feasible and accurate for studying substrate–protein inhibition. © 2013 Wiley Periodicals, Inc.     

Improvement of Ligand Affinity and Thermodynamic Properties by NMR‐Based Evaluation of Local Dynamics and Surface Complementarity in the Receptor‐Bound State

The thermodynamic properties of a ligand in the bound state affect its binding specificity. Strict binding specificity can be achieved by introducing multiple spatially defined interactions, such as hydrogen bonds and van der Waals interactions, into the ligand–receptor interface. These introduced interactions are characterized by restricted local dynamics and improved surface complementarity in the bound state. In this study, we experimentally evaluated the local dynamics and the surface complementarity of weak‐affinity ligands in the receptor‐bound state by forbidden coherence transfer analysis in free‐bound exchange systems (Ex‐FCT), using the interaction between a ligand, a myocyte‐enhancer factor 2A (MEF2A) docking peptide, and a receptor, p38α, as a model system. The Ex‐FCT analyses successfully provided information for the rational design of a ligand with higher affinity and preferable thermodynamic properties for p38α.     

Well‐controlled amphiphilic block glycopolymers and their molecular recognition with lectins

The atom transfer radical polymerization of an unprotected glycomonomer, 2‐{[(D ‐glucosamin‐2N‐yl)carbonyl]oxy}ethyl methacrylate (HEMAGl) is firstly reported. Controlled polymerizations were performed with the CuBr/N,N,N′,N′,N′‐pentamethyldiethylene triamine catalytic system with ethyl 2‐bromoisobutyrate and 1,2‐bis(bromoisobutyryloxy) ethane as mono and difunctional initiators in DMF solutions (80% w/w) at 40 and 50 °C, respectively. The polymerization of HEMAGl resulted in a controlled polymerization with linear kinetics, molecular weights which increase with conversion and narrow polydispersity indexes. Mono and difunctional PHEMAGl macroinitiators were used to synthesize the amphiphilic di and triblock glycopolymers with n‐butyl acrylate, verifying their living character. The self‐assembly of these glycopolymers in distilled water and in 0.1M NaCl solutions was studied by dynamic light scattering, showing the role of hydrogen bonds and the hydrophobic parts. In addition, their interaction with Concanavalin A lectin was examined, demonstrating the influence of molecular weight and copolymer composition. © 2010 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 48: 3623–3631, 2010