Interaction of singlet oxygen and superoxide radical anion with guanine and formation of its mutagenic modification 8‐oxoguanine

Formation of 8‐oxoguanine (8OG) from guanine in biological systems is known to cause lethal mutation and cancer. It has been suggested earlier, on the basis of experimental studies, that the oxygen molecule in its lowest singlet excited state (¹O₂) plays an important role in the formation of 8OG. In order to understand the possible mechanisms in this context, B3LYP/6‐31+G* and MP2/6‐31+G* calculations were carried out on the structures and stabilities of different molecules and complexes involved in the formation of 8OG. All the molecules, complexes, and transition states studied in the present report were solvated in aqueous media. Guanine has been found to make a strong complex with ¹O₂ with the latter species located above the imidazole ring plane, and the complex of guanine with ³O₂ is much weaker than that with ¹O₂. Transition state calculations were carried out to study formation of 7,8‐dihydro,8‐hydroxyguanine (8OHG) and 2‐oxo‐imidazole. It has been shown that 8OG can be formed in two different ways: (i) due to interaction of the radical cation of guanine with O where 8OHG complexed with ¹O₂ would occur as an intermediate, and (ii) due to interaction of guanine with ¹O₂ leading to the formation of guanine hydroperoxide that would react with a water molecule in the presence of two ¹O₂ molecules serving as a source of energy to overcome the barrier. It is shown that because the interaction strengths of ³O₂ and ¹O₂ with other molecules, e.g., guanine, are very different, a crossing of their potential energy surfaces takes place in both gas phase and aqueous media, as a result of which the lifetime of ¹O₂ is strongly decreased. © 2004 Wiley Periodicals, Inc. Int J Quantum Chem, 2005     

Luminescence properties of the structure built from 3‐cyano‐4‐dicyanomethylene‐5‐oxo‐4,5‐dihydro‐1H‐pyrrol‐2‐olate and caesium(I)

The structure of caesium(I) 3‐cyano‐4‐dicyanomethylene‐5‐oxo‐4,5‐dihydro‐1H‐pyrrol‐2‐olate (CsA), Cs⁺·C₈HN₄O₂⁻, is related to its luminescence properties. The structure of CsA (triclinic, P) is not isomorphous with previously reported structures (monoclinic, P2₁/c) of the KA and RbA salts. Nevertheless, the coordination numbers of the metals are equal for all salts (nine). Each anion in the CsA salt is connected by pairs of inversion‐related N—H...O hydrogen bonds to another anion, forming a centrosymmetric dimer. The dimers are linked into infinite ribbons, stacked by means of π–π interactions, thus building up an anionic wall. Time‐dependent density functional theory calculations show that the formation of the dimer shifts the wavelength of the luminescence maximum to the blue region. Shortening the distance between stacked anions in the row [from 3.431 (5) Å for RbA to 3.388 (2) Å for KA to 3.244 (10) Å for CsA] correlates with a redshift of the luminescence maximum from 574 and 580 nm to 596 nm, respectively.     

Comparative studies between hydrated hydrogen bonded and stacked DNA base pair

Influence of hydration on the Watson–Crick guanine–cytosine hydrogen bonded (h-bonded) base pair (GC) and stacked pair (G/C) was investigated in their first hydration shell. An electrostatic based approach has been used to identify the potential binding sites for water molecules around GC and G/C pairs. Several geometries of the complexes, GC…(H₂O)_n and G/C…(H₂O)_n (n=1–6) were investigated using HF/6-31G** and HF/6-31G++** methods. Further minimization calculations were performed at both B3P86/6-31G** and MP2/6-31G** levels to assess the role of electron correlation contribution in the hydration process. It can be concluded from the present findings that the stacked base-pair hydrate better than the corresponding h-bonded base pair, and DNA base pairs can accommodate up to 4–5 water molecules whereas stacked pair do accommodate 5–6 water molecules.     

Interactions between dimers of {1,1′‐[o‐phenylenebis(nitrilomethylidyne)]di‐2‐naphtholato‐κ4O,N,N′,O′}nickel(II)

In the title compound, [Ni(C₂₈H₁₈N₂O₂)], the Ni^II centre has a square‐planar coordination geometry in which the Schiff base ligand acts as a cis‐O,N,N′,O′‐tetradentate ligand. The crystal structure is built up of centrosymmetric dimer units stacked into chains along the [010] direction. Adjacent chains associate via C—H...O hydrogen bonding only, leading to a two‐dimensional sheet‐like structure consisting of layers parallel to (10). The cofacial dimeric complex contains an Ni...Ni contact of 3.291 (4) Å.     

A hydrogen‐bonded dimer of 13‐hydroxy‐13‐[(triisopropyl­silyl)­ethynyl]penta­cen‐6(13H)‐one

The title compound, C₃₃H₃₄O₂Si, has been obtained as a product in the synthesis of 6,13‐bis­[(triisopropyl­silyl)ethynyl]‐6,13‐dihydro­penta­cene‐6,13‐diol. The solid‐state structure reveals a dimer, with strong hydrogen bonds holding the two mol­ecules in a face‐to‐face arrangement [O⋯O = 2.746 (2) Å and O—H⋯O = 173 (2)°]. Within each dimer, the penta­cene units are π‐stacked (the distance between the mean least‐squares planes of 22 C atoms is 3.60 Å).     

Coordination polymers of CdII and PbII with croconate show remarkable differences in coordination patterns: a structural and spectroscopic study

The croconate dianion is a highly versatile ligand with two tautomeric forms making it useful for building large superstructures in the solid state. The single‐crystal X‐ray structures of Pb^II– and Cd^II–croconate coordination polymers, namely catena‐poly[[[diaqualead(II)]‐μ‐croconato‐κ⁴O¹,O²:O³,O⁴] monohydrate], {[Pb(C₅O₅)(H₂O)₂]·H₂O}_n, 1 , and catena‐poly[[triaquacadmium(II)]‐μ‐croconato‐κ⁴O¹,O²:O³,O⁴], [Cd(C₅O₅)(H₂O)₃]_n, 2 , have been determined. Both polymers form one‐dimensional (1D) structures; 1 is a nonplanar 1D zigzag coordination polymer extended along the crystallographic b axis, whereas 2 is a planar 1D ribbon parallel to the [101] direction. In 2 , three H₂O molecules are coordinated directly to the metal atom, while in 1 , only two H₂O molecules are directly coordinated to the metal atom. A third interstitial H₂O molecule is involved in hydrogen bonding with O atoms of the croconate ligands of an adjacent layer and other H₂O molecules, resulting in stacked double layers parallel to the [105] plane. Solid‐state FT–IR and solution UV–Vis spectra also substantiate the croconate coordination.     

Synthesis,Crystal Structure,and Magnetic Properties of {[Cu(phen)]2(C4H2O4)2} · 4.5H2O with C4H4O4 = Maleic Acid

Reaction of CuCl₂ · 2H₂O, phenanthroline, maleic acid and NaOH in CH₃OH/H₂O (1:1 v/v) at pH = 7.0 yielded blue {[Cu(phen)]₂(C₄H₂O₄)₂} · 4.5H₂O, which crystallizes in the monoclinic space group C2/c (no. 15) with cell dimensions: a = 18.127(2)Å, b = 12.482(2)Å, c = 14.602(2)Å, β = 103.43(1)°, U = 3213.5(8)ų, Z = 4. The crystal structure consists of the centrosymmetric dinuclear {[Cu(phen)]₂(C₄H₂O₄)₂} complex molecules and hydrogen bonded H₂O molecules. The Cu atoms are each square‐pyramidally coordinated by two N atoms of one phen ligand and three carboxyl O atoms of two maleato ligands with one carboxyl O atom at the apical position (d(Cu‐N) = 2.008, 2.012Å, equatorial d(Cu‐O) = 1.933, 1.969Å, axial d(Cu‐O) = 2.306Å). Two square‐pyramids are condensed via two apical carboxyl O atoms with a relatively larger Cu···Cu separation of 3.346(1)Å. The dinuclear complex molecules are assembled via the intermolecular π—π stacking interactions into 1D ribbons. Crossover of the resulting ribbons via interribbon π—π stacking interactions forms a 3D network with the tunnels occupied by H₂O molecules. The title complex behaves paramagnetically between 5—300 K, following the Curie‐Weiss law _χm(T—θ) = 0.435 cm³ · mol^—1 · K with θ = 1.59 K.     

Head‐to‐Tail Zig‐Zag Packing of Dipolar Merocyanine Dyes Affords High‐Performance Organic Thin‐Film Transistors

Attachment of bulky substituents at both thiophene donor (D) and thiazole acceptor (A) heterocycles of a dipolar (μ_g=10.4 D) D‐π‐A merocyanine dye affords a more than 1 Å expansion of the common antiparallel supramolecular dimer motif in the solid state, enabling very close π‐contacts (3.36 Å) to two other neighbor molecules on each of the two remaining π‐faces. This unusual packing motif leads to three‐dimensional percolation pathways for hole transport and affords thin‐film transistors with mobility up to 0.64 cm² V^?1 s^?1.     

Wide‐Ranging Host Capability of a PdII‐Linked M2L4 Molecular Capsule with an Anthracene Shell

This article reports that an M₂L₄ molecular capsule is capable of encapsulating various neutral molecules in quantitative yields. The capsule was obtained as a single product by mixing a small number of components; two Pd^II ions and four bent bispyridine ligands containing two anthracene panels. Detailed studies of the host capability of the Pd^II‐linked capsule revealed that spherical (e.g., paracyclophane, adamantanes, and fullerene C₆₀), planar (e.g., pyrenes and triphenylene), and bowl‐shaped molecules (e.g., corannulene) were encapsulated in the large spherical cavity, giving rise to 1:1 and 1:2 host–guest complexes, respectively. The volume of the encapsulated guest molecules ranged from 190 to 490 ų. Within the capsule, the planar guests adopt a stacked‐dimer structure and the bowl‐shaped guests formed an unprecedented concave‐to‐concave capsular structure, which are fully shielded by the anthracene shell. Competitive binding experiments of the capsule with a set of the planar guests established a preferential binding series for pyrenes≈phenanthrene>triphenylene. Furthermore, the capsule showed the selective formation of an unusual ternary complex in the case of triphenylene and corannulene.     

Crystal Structures of [Mn2(H2O)4(phen)2(C4H4O4)2] · 2 H2O and [Mn(phen)2(H2O)2][Mn(phen)2(C4H4O4)](C4H4O4) · 7 H2O

Reactions of 1,10‐phenanthroline monohydrate, Na₂C₄H₄O₄ · 6 H₂O and MnSO₄ · H₂O in CH₃OH/H₂O yielded a mixture of [Mn₂(H₂O)₄(phen)₂(C₄H₄O₄)₂] · 2 H₂O ( 1 ) and [Mn(phen)₂(H₂O)₂][Mn(phen)₂(C₄H₄O₄)](C₄H₄O₄) · 7 H₂O ( 2 ). The crystal structure of 1 (P1 (no. 2), a = 8.257(1) Å, b = 8.395(1) Å, c = 12.879(2) Å, α = 95.33(1)°, β = 104.56(1)°, γ = 106.76(1)°, V = 814.1(2) ų, Z = 1) consists of the dinuclear [Mn₂(H₂O)₄(phen)₂(C₄H₄O₄)₂] molecules and hydrogen bonded H₂O molecules. The centrosymmetric dinuclear molecules, in which the Mn atoms are octahedrally coordinated by two N atoms of one phen ligand and four O atoms from two H₂O molecules and two bis‐monodentate succinato ligands, are assembled via π‐π stacking interactions into 2 D supramolecular layers parallel to (101) (d(Mn–O) = 2.123–2.265 Å, d(Mn–N) = 2.307 Å). The crystal structure of 2 (P1 (no. 2), a = 14.289(2) Å, b = 15.182(2) Å, c = 15.913(2) Å, α = 67.108(7)°, β = 87.27(1)°, γ = 68.216(8)°, V = 2934.2(7) ų, Z = 2) is composed of the [Mn(phen)₂(H₂O)₂]²⁺ cations, [Mn(phen)₂(C₄H₄O₄)] complex molecules, (C₄H₄O₄)^2– anions, and H₂O molecules. The (C₄H₄O₄)^2– anions and H₂O molecules form 3 D hydrogen bonded network and the cations and complex molecules in the tunnels along [001] and [011], respectively, are assembled via the π‐π stacking interactions into 1 D supramolecular chains. The Mn atoms are octahedrally coordinated by four N atoms of two bidentate chelating phen ligands and two water O atoms or two carboxyl O atoms (d(Mn–O) = 2.088–2.129 Å, d(Mn–N) = 2.277–2.355 Å). Interestingly, the succinato ligands in the complex molecules assume gauche conformation bidentately to chelate the Mn atoms into seven‐membered rings.     

Density functional study of guanine and uracil quartets and of guanine quartet/metal ion complexes

The structures and interaction energies of guanine and uracil quartets have been determined by B3LYP hybrid density‐functional calculations. The total interaction energy ΔE^T of the C_4h‐symmetric guanine quartet consisting of Hoogsteen‐type base pairs with two hydrogen bonds between two neighbor bases is −66.07 kcal/mol at the highest level. The uracil quartet with C6 H6O4 interactions between the individual bases has only a small interaction energy of −20.92 kcal mol⁻¹, and the interaction energy of −24.63 kcal/mol for the alternative structure with N3 H3O4 hydrogen bonds is only slightly more negative. Cooperative effects contribute between 10 and 25% to all interaction energies. Complexes of metal ions with G‐quartets can be classified into different structure types. The one with Ca²⁺ in the central cavity adopts a C_4h‐symmetric structure with coplanar bases, whereas the energies of the planar and nonplanar Na⁺ complexes are almost identical. The small ions Li⁺, Be²⁺, Cu⁺, and Zn²⁺ prefer a nonplanar S₄‐symmetric structure. The lack of coplanarity prevents probably a stacking of these base quartets. The central cavity is too small for K⁺ ions and, therefore, this ion favors in contrast to all other investigated ions a C₄‐symmetric complex, which is 4.73 kcal/mol more stable than the C_4h‐symmetric one. The distance 1.665 Å between K⁺ and the root‐mean‐square plane of the guanine bases is approximately half of the distance between two stacked G‐quartets. The total interaction energy of alkaline earth ion complexes exceeds those with alkali ions. Within both groups of ions the interaction energy decreases with an increasing row position in the periodic table. The B3LYP and BLYP methods lead to similar structures and energies. Both methods are suitable for hydrogen‐bonded biological systems. Compared with the before‐mentioned methods, the HCTH functional leads to longer hydrogen bonds and different relative energies for two U‐quartets. Finally, we calculated also structures and relative energies with the MMFF94 forcefield. Contrary to all DFT methods, MMFF94 predicts bifurcated C HO contacts in the uracil quartet. In the G‐quartet, the MMFF94 hydrogen bond distances N2 H22N7 are shorter than the DFT distances, whereas the N1 H1O6 distances are longer. © 2000 John Wiley & Sons, Inc. J Comput Chem 22: 109–124, 2001     

A third polymorph of 4‐(2,6‐difluorophenyl)‐1,2,3,5‐dithiadiazolyl

The crystal structure of a third polymorphic form of the known 4‐(2,6‐difluorophenyl)‐1,2,3,5‐dithiadiazolyl radical, C₇H₃F₂N₂S₂, is reported. This new polymorph represents a unique crystal‐packing motif never before observed for 1,2,3,5‐dithiadiazolyl (DTDA) radicals. In the two known polymorphic forms of the title compound, all of the molecules form cis‐cofacial dimers, such that two molecules are π‐stacked with like atoms one on top of the other, a common arrangement for DTDA species. By contrast, the third polymorph, reported herein, contains two crystallographically unique molecules organized such that only 50% are dimerized, while the other 50% remain monomeric radicals. The dimerized molecules are arranged in the trans‐antarafacial mode. This less common dimer motif for DTDA species is characterized by π–π interactions between the S atoms [S...S = 3.208 (1) Å at 110 K], such that the two molecules of the dimer are related by a centre of inversion. The most remarkable aspect of this third polymorph is that the DTDA dimers are co‐packed with monomers. The monomeric radicals are arranged in one‐dimensional chains directed by close lateral intermolecular contacts between the two S atoms of one DTDA heterocycle and an N atom of a neighbouring coplanar DTDA heterocycle [S...N = 2.857 (2) and 3.147 (2) Å at 110 K].     

A low‐temperature polymorph of m‐quinquephenyl

A low‐temperature polymorph of 1,1′:3′,1′′:3′′,1′′′:3′′′,1′′′′‐quinquephenyl (m‐quinquephenyl), C₃₀H₂₂, crystallizes in the space group P2₁/c with two molecules in the asymmetric unit. The crystal is a three‐component nonmerohedral twin. A previously reported room‐temperature polymorph [Rabideau, Sygula, Dhar & Fronczek (1993). Chem. Commun. pp. 1795–1797] also crystallizes with two molecules in the asymmetric unit in the space group P. The unit‐cell volume for the low‐temperature polymorph is 4120.5 (4) ų, almost twice that of the room‐temperature polymorph which is 2102.3 (6) ų. The molecules in both structures adopt a U‐shaped conformation with similar geometric parameters. The structural packing is similar in both compounds, with the molecules lying in layers which stack perpendicular to the longest unit‐cell axis. The molecules pack alternately in the layers and in the stacked columns. In both polymorphs, the only interactions between the molecules which can stabilize the packing are very weak C—H...π interactions.     

Syntheses and Crystal Structures of Two Metal Succinates Modified by Bipyridines

Two new metal succinates modified by rigid bipyridines, Cd(4, 4′‐bpy)(C₄H₄O₄)·1/4H₂O ( 1 ) and Cu(2, 2′‐bpy)(C₄H₄O₄)_0.5(NO₃)(H₂O) ( 2 ) (bpy = bipyridine), have been synthesized by hydrothermal reactions and structurally determined. Complex 1 crystallizes in the orthorhombic space group Cmca with the cell parameters a = 11.696(2), b = 15.554(2), c = 15.874(3) Å, α = β = γ = 90.00°, V = 2888(3) ų, Z = 8. Complex 2 crystallizes in the triclinic space group with a = 7.077(1), b = 9.838(2), c = 10.461(2) Å, α = 71.941(3)°, β = 73.078(3)°, γ = 74.502(3)°, V = 649.8(2) ų, Z = 2. In complex 1 , a 2‐D network was formed by Cd‐succinato bonding. The 2‐D networks are pillared by 4, 4′‐bpy ligands, forming a 3‐D grid framework. The 2‐fold interpenetration of the resulting 3‐D frameworks completes the molecular structure. In complex 2 , the Cu^II atom adopts a distorted octahedral in which the Cu^II atoms are bridged by two H₂O molecules into an infinite zigzag chain, [Cu₂(H₂O)₂(C₄H₄O₄)]_n. The neighboring chains are further linked by π‐π stacking interactions into a 2‐D network, and the interlayer hydrogen bonds lead to the final 3‐D crystal structure.     

Similarities and differences in the structures of 5‐bromo‐6‐hydroxy‐7,8‐dimethylchroman‐2‐one and 6‐hydroxy‐7,8‐dimethyl‐5‐nitrochroman‐2‐one

The title compounds, C₁₁H₁₁BrO₃, (I), and C₁₁H₁₁NO₅, (II), respectively, are derivatives of 6‐hydroxy‐5,7,8‐trimethylchroman‐2‐one substituted at the 5‐position by a Br atom in (I) and by a nitro group in (II). The pyranone rings in both molecules adopt half‐chair conformations, and intramolecular O—H...Br [in (I)] and O—H...O_nitro [in (II)] hydrogen bonds affect the dispositions of the hydroxy groups. Classical intermolecular O—H...O hydrogen bonds are found in both molecules but play quite dissimilar roles in the crystal structures. In (I), O—H...O hydrogen bonds form zigzag C(9) chains of molecules along the a axis. Because of the tetragonal symmetry, similar chains also form along b. In (II), however, similar contacts involving an O atom of the nitro group form inversion dimers and generate R₂²(12) rings. These also result in a close intermolecular O...O contact of 2.686 (4) Å. For (I), four additional C—H...O hydrogen bonds combine with π–π stacking interactions between the benzene rings to build an extensive three‐dimensional network with molecules stacked along the c axis. The packing in (II) is much simpler and centres on the inversion dimers formed through O—H...O contacts. These dimers are stacked through additional C—H...O hydrogen bonds, and further weak C—H...O interactions generate a three‐dimensional network of dimer stacks.     

Bis(hinokitiolato)copper(II): modification (III)

Bis(hinokitiolato)copper(II), Cu(hino)₂, exhibits both antibacterial and antiviral properties, and has been previously shown to exist in two modifications. A third modification has now been confirmed, namely tetrakis(μ₂‐3‐isopropyl‐7‐oxocyclohepta‐1,3,5‐trien‐1‐olato)bis(3‐isopropyl‐7‐oxocyclohepta‐1,3,5‐trien‐1‐olato)tricopper(II)–bis(μ₂‐3‐isopropyl‐7‐oxocyclohepta‐1,3,5‐trien‐1‐olato)bis[(3‐isopropyl‐7‐oxocyclohepta‐1,3,5‐trien‐1‐olato)copper(II)] (1/1), [Cu(C₁₀H₁₁O₂)₂]₃·[Cu(C₁₀H₁₁O₂)₂]₂, where 3‐isopropyl‐7‐oxocyclohepta‐1,3,5‐trien‐1‐olate is the systematic name for the hinokitiolate anion. This new modification is composed of discrete [cis‐Cu(hino)₂]₂[trans‐Cu(hino)₂] trimers and [cis‐Cu(hino)₂]₂ dimers. The Cu atoms are bridged by μ₂‐O atoms from the hinokitiolate ligands to give distorted square‐pyramidal and distorted octahedral Cu^II coordination environments. Hence, the Cu^II environments are CuO₅/CuO₆/CuO₅ for the trimer and CuO₅/CuO₅ for the dimer. Each trimer and dimer has crystallographically imposed inversion symmetry. The trimer has never been observed before, the dimer has been seen only once before, and the combination of the two together in the same lattice is unprecedented. The CuO₅ cores exhibit four strong basal Cu—O bonds [1.915 (2)–1.931 (2) Å] and one weak apical Cu—O bond [2.652 (2)–2.658 (2) Å]. The CuO₆ core exhibits four strong equatorial Cu—O bonds [1.922 (2)–1.929 (2) Å] and two very weak axial Cu—O bonds [2.911 (3) Å]. The bite angles for the chelating hinokitiolate ligands range from 83.13 (11) to 83.90 (10)°.     

Water Interaction with Iron Oxides

We present a mechanistic study on the interaction of water with a well‐defined model Fe₃O₄(111) surface that was investigated by a combination of direct calorimetric measurements of adsorption energies, infrared vibrational spectroscopy, and calculations bases on density functional theory (DFT). We show that the adsorption energy of water (101 kJ mol⁻¹) is considerably higher than all previously reported values obtained by indirect desorption‐based methods. By employing ¹⁸O‐labeled water molecules and an Fe₃O₄ substrate, we proved that the generally accepted simple model of water dissociation to form two individual OH groups per water molecule is not correct. DFT calculations suggest formation of a dimer, which consists of one water molecule dissociated into two OH groups and another non‐dissociated water molecule creating a thermodynamically very stable dimer‐like complex.     

MnFe2O4 nanoclusters as labels for the quantitative detection of D‐dimer in a lateral‐flow immunochromatographic assay

In this study, MnFe₂O₄ nanoclusters were prepared as bioprobes to establish a lateral‐flow immunochromatographic assay (LFIA) for the rapid and quantitative detection of D‐dimer for the first time. The magnetic properties of the magnetic labels play a key role in the quantitative detection of biomolecules. The 47.3‐nm MnFe₂O₄ magnetic nanoclusters (MNCs) with good dispersion and high saturation magnetization (76 emu/g) were fabricated via thermal decomposition of Fe(acac)₃ with Mn(acac)₂. The prepared MnFe₂O₄ MNCs were well dispersed in water because the surfaces were fully covered with 3,4‐dihydroxyhydrocinnamic acid (DHCA) molecules by ligand exchange. Anti‐D‐dimer antibodies were coupled on the surface of MnFe₂O₄ MNCs, and the target protein, D‐dimer, was detected, in the range 0.05–6 μg/mL. This assay provides a promising platform for D‐dimer detection for point‐of‐care diagnosis.     

Structure of the Michaelis Complex and Function of the Catalytic Center in the Reductive Half‐Reaction of Computational and Synthetic Models of Sulfite Oxidase

By using frontier‐molecular‐orbital and electrostatic (nucleophilic) interactions as well as relaxed potential‐energy surface scans, it is shown that the initial step in the oxygen‐atom transfer (OAT) reaction of [Mo^VIO₂‐(S₂C₂Me₂)SMe]^?1 ( 1 ) and [Mo^VIO₂‐{(S₂C₂(CN)₂}₂]^2? ( 2 ) with HSO₃^? takes place by oxoanionic binding of the substrate to the Mo^VI center with the formation of a stable Michaelis complex. The gas‐phase and solvent‐corrected enthalpy profile with fully optimized minima and transition states for the OAT reaction of 1 and 2 with HSO₃^? showed the release of reaction energy for both complexes. The optimized geometries of 1 and 2 in the respective enzyme–substrate complexes showed a common feature with the participation of hydrogen bonding of the substrate with the axial (spectator) oxo group in the subsequent formation of the six‐membered MoO₂HOS transition state. The enzyme–substrate complex of 2 shows heptacoordination as proposed earlier, although the trans (to axial oxo)‐Mo? S(dithiolene) bond is elongated to 2.948 Å.     

DFT study on cooperativity in the interactions of hydrazoic acid clusters

Density functional theory at the B3LYP level with the 6‐311G** basis set is performed to calculate the systems consisting of up to four hydrazoic acid molecules. The dimers are found to exhibit cyclic and chain structures with N … H contacts at ca. 2.1–2.7 Å. However, there are only cyclic structures with N … H contacts at ca. 2.0–2.3 Å and 2.0–2.1 Å in the trimer and tetramer, respectively. Hydrogen bond distances in the trimer and tetramer are shorter than those in the cyclic dimer as a result of the stronger interaction between molecules. The contribution of cooperative effect to the interaction energy is significant. After the correction of the basis set superposition error and zero‐point energy, the binding energies are ?10.69, ?29.34, and ?54.26 kJ·mol^?1 for the most stable dimer, trimer, and tetramer, respectively. The calculated IR shifts for N? H stretching mode increase with the size of the cluster growths, reaching more than 200 cm^?1 in the tetramer. For the most stable clusters, the transition from the monomer to dimer, dimer to trimer, and trimer to tetramer involve changes of ?14.40, ?25.68, and ?31.88 kJ·mol^?1 for the enthalpies at 298.15 K and 1atm, respectively. We also perform Mulliken populations analysis and find the Mulliken populations on intermolecular N … H increasing in the sequence of the dimer, trimer, and tetramer. © 2003 Wiley Periodicals, Inc. Int J Quantum Chem 94: 279–286, 2003