NMR structural characterization from one‐bond 13C?13C couplings: Complete assignment of a hydrogen‐poor depsidone

The connectivity, conformation, tautomeric form, and dynamics of a new depsidone (perisalazinic acid) were characterized using one‐bond ¹³C? ¹³C NMR scalar couplings (¹J_CC) obtained from the INADEQUATE experiment. Characterization of perisalazinic acid using more conventional NMR techniques is problematic due to the extremely limited number of C? H protons present. In the present study, 81 candidate structures were considered and a best fit structure was selected by comparing computed ¹J_CC values for each candidate to 15 experimental values. Of the six flexible moieties in perisalazinic acid, three are adequately represented by a single orientation stabilized by intramolecular hydrogen bonding. The three remaining groups are present as mixtures of conformers with two sites consisting of a pair of conformations and another disordered over six orientations. This study demonstrates the feasibility of complete three‐dimensional structural characterization of an unknown using only theoretical and experimental ¹J_CC values.     

A Karplus Equation for the Conformational Analysis of Organic Molecular Crystals

Vicinal scalar couplings (³J) are extensively used for the conformational analysis of organic compounds in the liquid state through empirical Karplus equations. In contrast, there are no examples of such use for the structural investigation of solids. With the support of first principles calculations, we demonstrate here that ¹³C‐¹³C ³J coupling constants (³J_CC) measured on a series of isotopically enriched solid amino acids and sugars can be related to dihedral angles by a simple Karplus‐like relationship, and we provide a parameterized Karplus function for the conformational analysis of organic molecular crystals. Under the experimental conditions discussed, torsional angles can be estimated from the experimental ³J_CC values with an accuracy of 10° using this function. These results open new perspectives towards the use of ³J_CC as a new analytical tool that could considerably simplify structure determination of functional organic solids.     

Additional pitfalls of using 1,1‐ADEQUATE for structure elucidation

1,1‐ADEQUATE is a powerful and robust NMR experiment to establish carbon–carbon connectivities using modest sample quantities when cryogenic probe technology is available. Yet potential pitfalls of applying this method are not widely appreciated, such as weak or missing ¹J_CC correlations in strongly coupled ¹³C‐¹³C AB spin systems and unusually large multi‐bond (ⁿJ_CC) correlations associated with particular functional groups. These large ⁿJ_CC correlations observed in 1,1‐ADEQUATE spectra could be mistaken for ¹J_CC correlations. Copyright © 2016 John Wiley & Sons, Ltd.     

Observation of untoward 3Jcc correlations in 1,1‐ADEQUATE spectra of pyrimidine analogs: Avoiding potential interpretation pitfalls

Recently, it has been reported that large ⁿJ_CC correlations can sometimes be observed in 1,1‐ADEQUATE spectra with significant intensity, which opens the possibility of structural misassignment. In this work, we have focused on pyrimidine‐based compounds, which exhibit multiple bond correlations in the 1,1‐ADEQUATE experiment as a consequence of ³J_CC coupling constants greater than 10 Hz. Results are supported by both the experimental measurement of ³J_CC coupling constants in question using J‐modulated‐ADEQUATE and density functional theory calculations.     

Inversion of 1JCC correlations in 1,n‐ADEQUATE spectra

ADEQUATE experiments provide an alternative to the more commonly employed GHMBC experiment for the establishment of long‐range heteronuclear connectivities. The 1,1‐ADEQUATE experiment allows the unequivocal identification of both protonated and non‐protonated carbon resonances adjacent to a protonated carbon. The 1,n‐ADEQUATE experiment establishes correlations via an initial ¹J_CH heteronuclear transfer followed by an ⁿJ_CC out‐and‐back transfer, most typically, via three carbon–carbon bonds. Hence, the 1,n‐ADEQUATE experiment allows the equivalent of ⁴J_CH heteronuclear correlations to be probed when they are not observed in a GHMBC spectrum. Aside from the lower sensitivity of the 1,n‐ADEQUATE experiment relative to GHMBC experiments, the interpretation of the former is also complicated by the ‘leakage’ of ¹J_CC correlations into the spectrum that must be identified. A method for the inversion of ¹J_CC correlations to facilitate the interpretation of 1,n‐ADEQUATE spectra is presented that allows a single experiment to be performed to access ¹J_CC and ⁿJ_CC correlation information. Copyright © 2012 John Wiley & Sons, Ltd.     

Observation of potentially troublesome 2JCC correlations in 1,1‐ADEQUATE spectra

Despite the tremendous usage of HMBC to establish long‐range ¹H–¹³C and ¹H–¹⁵N heteronuclear correlations, an inherent drawback of the experiment is the indeterminate nature of the ⁿJ_XH correlations afforded by the experiment. A priori there is no reliable way of determining whether a given ⁿJ_CH correlation is, for example, via two‐, three‐, or sometimes even four‐bonds. This limitation of the HMBC experiment spurred the development of the ADEQUATE family of NMR experiments that rely on, in the case of 1,1‐ADEQUATE, an out‐and‐back transfer of magnetization via the ¹J_CC homonuclear coupling constant, which is significantly larger than ⁿJ_CC (where n = 2–4) couplings in most cases. Hence, the 1,1‐ADEQUATE experiment has generally been assumed to unequivocally provide the equivalent of ²J_CH correlations. The recent development of the 1,1‐ and 1,n‐HD‐ADEQUATE experiments that can provide homodecoupling for certain ¹J_CC and ⁿJ_CC correlations has increased the sensitivity of the ADEQUATE experiments significantly and can allow acquisition of these data in a fraction of the time required for the original iterations of this pulse sequence. With these gains in sensitivity, however, there occasionally come unanticipated consequences. We have observed that the collapse of proton multiplets, in addition to providing better s/n for the desired ¹J_CC correlations can facilitate the observation of typically weaker ²J_CC correlations across intervening carbonyl resonances in 1,1‐HD‐ADEQUATE spectra. Several examples are shown, with the results supported by the measurement of the ²J_CC coupling constants in question using J‐modulated‐HD‐ADEQUATE and DFT calculations. Copyright © 2016 John Wiley & Sons, Ltd.     

One‐bond 13C–13C coupling constants in alkyl‐substituted cyclopropenes: experimental and theoretical studies

Measurements of one‐bond carbon–carbon coupling constants, ¹J(C, C), were performed for two series of compounds, alkyl‐substituted cyclopropenes and cyclopropanes. The experimental data were complemented by a set of DFT‐calculated J couplings for the parent cyclopropene ( 1 ), its methyl and silyl derivatives and, additionally, for 1‐methylcyclobutene ( 3 ), 1‐methylcyclopentene ( 4 ) and 1‐methylcyclohexene ( 5 ) and good agreement was observed between the experimental and the calculated data; all the trends are perfectly maintained, including a dramatic decrease in the couplings across endocyclic single bonds in cyclopropene and its derivatives, and a significant decrease in the corresponding couplings in cyclobutene. Using the data obtained, the s characters of the carbon hybrid orbitals involved in the formation of the cyclopropene were calculated. The results clearly show that the ring closure and the related strain exerted upon the cyclopropene molecule only slightly disturb the electron structure of the double bond. The s character of the corresponding carbon orbital is 0.314 in cyclopropene vs the theoretical value of 0.333 in ethene. This is at variance with the endo‐ and exocyclic single bonds, where the s characters of the orbitals forming the endocyclic single bonds are much smaller than those of the bonds in the open‐chain compounds, i.e. 0.229 (C‐1 and/or C‐2) and 0.166 (C‐3). The s values calculated for the exocyclic CH bonds are 0.334 for C‐3 and 0.456 for C‐1 and/or C‐2. Copyright © 2002 John Wiley & Sons, Ltd.     

Structural studies on aryl‐substituted enaminoketones and their thio analogues. Part II. Experimental and DFT calculated carbon–carbon coupling constants,nJ(CC)'s (n = 1–3)

Spin–spin carbon–carbon coupling constants across one, two and three bonds, J(CC), have been measured for a series of aryl‐substituted Z‐s‐Z‐s‐E enaminoketones and their thio analogues. As a result, a large set, altogether 178, of J(CC)s has been obtained. It consists of 82 couplings across one bond, 31 couplings across two bonds and 65 couplings across three bonds. Independently, the DFT calculations at the B3PW91/6‐311++G(d,p)//B3PW91/6‐311++G(d,p) level yielded a set of theoretical J(CC) values. A comparison of these two sets of data gave an excellent linear correlation with parameters a and b close to ideal; a = 0.9978 which is not far from unity and b = 0.22 Hz which is close to zero. The ¹J(CC) couplings determined for the crucial fragment of the molecules, i.e. ? C?C? C?O (or ? C?C? C?S), are: ¹J(C?C) ≈ 68 Hz (67 Hz) and ¹J(C? C) = 60.5 Hz (60.0 Hz). The corresponding couplings found for the Z‐s‐Z‐s‐E isomer of the parent enaminoketone, 4‐methylamino‐but‐3‐en‐2‐one are 64.1 and 59.3 Hz, respectively. The most sensitive towards substitution of the oxygen atom by sulfur are two‐bond couplings between the α‐vinylic and aromatic C_ipso carbon atoms, which attain 12 Hz in the enaminoketone derivatives and decrease to 5 Hz in their thio analogues. Copyright © 2009 John Wiley & Sons, Ltd.     

HMBC‐1,n‐ADEQUATE spectra calculated from HMBC and 1,n‐ADEQUATE spectra

Unsymmetrical and generalized indirect covariance processing methods provide a means of mathematically combining pairs of 2D NMR spectra that share a common frequency domain to facilitate the extraction of correlation information. Previous reports have focused on the combination of HSQC spectra with 1,1‐, 1,n‐, and inverted ¹J_CC 1,n‐ADEQUATE spectra to afford carbon–carbon correlation spectra that allow the extraction of direct (¹J_CC), long‐range (ⁿJ_CC, where n ≥ 2), and ¹J_CC‐edited long‐range correlation data, respectively. Covariance processing of HMBC and 1,1‐ADEQUATE spectra has also recently been reported, allowing convenient, high‐sensitivity access to ⁿJ_CC correlation data equivalent to the much lower sensitivity n,1‐ADEQUATE experiment. Furthermore, HMBC‐1,1‐ADEQUATE correlations are observed in the F₁ frequency domain at the intrinsic chemical shift of the ¹³C resonance in question rather than at the double‐quantum frequency of the pair of correlated carbons, as visualized by the n,1, and m,n‐ADEQUATE experiments, greatly simplifying data interpretation. In an extension of previous work, the covariance processing of HMBC and 1,n‐ADEQUATE spectra is now reported. The resulting HMBC‐1,n‐ADEQUATE spectrum affords long‐range carbon–carbon correlation data equivalent to the very low sensitivity m,n‐ADEQUATE experiment. In addition to the significantly higher sensitivity of the covariance calculated spectrum, correlations in the HMBC‐1,n‐ADEQUATE spectrum are again detected at the intrinsic ¹³C chemical shifts of the correlated carbons rather than at the double‐quantum frequency of the pair of correlated carbons. HMBC‐1,n‐ADEQUATE spectra can provide correlations ranging from diagonal (⁰J_CC or diagonal correlations) to ⁴J_CC under normal circumstances to as much as ⁶J_CC in rare instances. The experiment affords the potential means of establishing the structures of severely proton‐deficient molecules. Copyright © 2013 John Wiley & Sons, Ltd.     

<Superscript>13</Superscript>C-<Superscript>13</Superscript>C spin-spin coupling constants in structural studies: XXXIX. Nonempirical calculations of heteroaromatic oximes

The results of high-level nonempirical quantum-chemical calculations of ¹³C-¹³C coupling constants in twelve heteroaromatic ketone oximes are well consistent with the available experimental data. In all the examined compounds, the effect of the unshared electron pair on the oxime nitrogen atom on J _CC strongly predominates over conformational and electronic effects, which makes it possible to unambiguously assign J _CC values to different configurations.     

Small carbon‐carbon couplings in monosubstituted benzenes – their signs and magnitudes determined by HCSE method

Signed values of all intra‐ring ^2,3,4J(C,C) couplings in nine monosubstituted benzenes (C₆H₅‐X where X = F, Cl, Br, CH₃, OCH₃, Si(CH₃)₃, C ≡ N, NO, NO₂) are experimentally determined as well as nine couplings to substituent carbons. It is confirmed that while all the vicinal intra‐ring ³J(C,C) are positive and all geminal ²J(C2,C4) are negative, both signs are found for geminal ²J(C1,C3) couplings. All the determined signs agree with those already predicted by theoretical calculations. Copyright © 2013 John Wiley & Sons, Ltd.     

A study of NMR parameters of cyclobutenones and benzocyclobutenones

An NMR study of ketones 5–12 was undertaken to gain insight into the low electrophilicity of the carbonyl moiety of butenones 9–11. Initial IR studies on compounds 9–12 indicated that there is relatively strong double bond character (and hence low electrophilicity) in the carbonyl of saturated and unsaturated cyclobutyl ketones. The ¹³C chemical shifts confirm that the carbonyl moiety is highly conjugated with the fused benzene ring in 9, and with the olefinic linkage in 10 and 11. Partial positive charge is distributed away from the carbonyl carbon, which is also expected to lower the electrophilicity of the carbonyl carbon atoms of 9–11. One‐bond carbon–proton coupling constants (¹J_CH) depend directly on carbon hybridization. In the four‐membered ring ketones 9–12 the experimental values are larger than in cyclobutane, probably as a result of the additional strain of the extra trigonal centers in the ring. A similar trend is seen in the case of the olefinic CH in 10 and 11 (ca 175 Hz), for which the coupling constant is larger than for the corresponding carbon in cyclobutene. ¹J_CC values between the ring carbon atoms of the cyclobutenones are some 20% lower than in the models—a bigger difference than in cyclobutanes, again indicative of the increased ring strain. The very low 42.4 Hz coupling between C‐1 and C‐2 in 9 might well indicate a measure of bond localization. ²J_CC and ³J_CC values are also discussed. Copyright © 2003 John Wiley & Sons, Ltd.     

Hochauflösungs-13c-nmr-spektroskopie—III: Strukturabhängigkeit der vicinalen methyl-13c,h-kopplungen in methylazulenen,methylaceheptylenen und anderen methyl-sub stituierten polycyclen mit fünf- und siebengliedrigen ringen

The vicinal couplings of ring hydrogens to methyl C atoms (³J_CH3H) in 22 methyl substituted non-benzenoid polycyclic conjugated hydrocarbons have been determined from the undecoupled ¹³C NMR spectra and have been correlated with bond lengths as well as with the corresponding vicinal H,H couplings, which are taken partly from own ¹H NMR analysis and partly from literature. As a result the (³J_CH3H) couplings of sterically unperturbated methyl groups in 7-membered rings are proportional to the corresponding ³J_HH values which is indicative of comparable influences, but both types of vicinal couplings are not dependent on bond lengths only. Moreover they are to a large extent determined by the CCH bond angles θ and θ', which show a significant variation in condensed 7-membered rings so that this twofold dependence has to be taken into account for structure determinations.     

STRONG INADEQUATE,an experiment for detection of small J(C,C) couplings in symmetrical molecules

A new version of the two-dimensional INADEQUATE experiment was designed for detection of small couplings between equivalent carbon atoms separated in the molecule by several bonds, where other techniques fail due to rich line splitting and mutual peak cancellation in many molecules. As the proposed method is suitable for detection of couplings in strongly coupled systems in general, we propose the name STRONG INADEQUATE in the paper. Similar to other methods for detection of couplings between equivalent carbons, the STRONG INADEQUATE experiment utilizes one-bond carbon–proton coupling for creation of the effective chemical shift differences. The STRONG INADEQUATE experiment works superbly for ⁿJ_CC, where n ≥ 3. Then the F1 pattern is reduced to a simple antiphase doublet with ⁿJ_CC separation, and this pattern is also preserved when a symmetrical HC···C′H′ system is coupled to other protons. Even in the measurement of ²J_CC couplings, the STRONG INADEQUATE experiment generates a much simpler pattern than the original pulse sequences for measurement of couplings between equivalent carbons.     

Conformational Dependence of Through‐Space Tellurium–Tellurium Spin–Spin Coupling in Peri‐Substituted Bis(Tellurides)

Three related series of peri‐substituted bis(tellurides) bearing naphthalene, acenaphthene and acenaphthylene backbones (Nap/Acenap/Aceyl(TeY)₂ (Nap=naphthalene‐1,8‐diyl N ; Acenap=acenaphthene‐5,6‐diyl A ; Aceyl=acenaphthylene‐5,6‐diyl Ay ; Y=Ph 1 ; Fp 2 ; Tol 3 ; An‐p­ 4 ; An‐o­ 5 ; Tp 6 ; Mes 7 ; Tip 8 ) have been synthesised and their solid‐state structures determined by X‐ray crystallography. Molecular conformations were classified as a function of the two C9‐C‐Te‐C(Y) dihedral angles (θ); in the solid all members adopt AB or CCt configurations, with larger Te(aryl) moieties exclusively imposing the CCt variant. Exceptionally large J(¹²⁵Te,¹²⁵Te) spin–spin coupling constants between 3289–3848 Hz were obtained for compounds substituted by bulky Te(aryl) groups, implying these species are locked in a CCt‐type conformation. In contrast, compounds incorporating smaller Te(aryl) moieties are predicted to be rather dynamic in solution and afford much smaller J values (2050–2676 Hz), characteristic of greater populations of AB conformers with lower couplings. This conformational dependence of through‐space coupling is supported by DFT calculations.     

A toolbox of HSQC experiments for small molecules at high 13C‐enrichment. Artifact‐free,fully 13C‐homodecoupled and JCC‐encoding pulse sequences

A set of modified HSQC experiments designed for the study of ¹³C‐enriched small molecules is introduced. It includes an improved sensitivity‐enhanced HSQC experiment eliminating signal artifacts because of high‐order ¹³C magnetization terms generated at high ¹³C enrichment. A broadband homonuclear ¹³C decoupling sequence based on Zangger and Sterk's method simplifies the complex ¹³C–¹³C multiplet structure in the F1 dimension of HSQC. When recording spectra at high resolution, the combination with a multiple‐site modulation of the selective pulse outperforms the constant‐time HSQC in terms of sensitivity and reliability. Finally, two pulse sequences reintroducing selected J_CC couplings with selective pulses facilitate their assignments and measurements either in the splitting of the resulting doublets or by modulation of the signal amplitude. A sample of uniformly 92% ¹³C‐enriched cholesterol is used as an example. Copyright © 2013 John Wiley & Sons, Ltd.     

Theoretical study of bifurcated hydrogen bonding effects on the 1J(N,H), 1hJ(N,H), 2hJ(N,N) couplings and 1H, 15N shieldings in model pyrroles

According to the density functional theory calculations, the X···H···N (X?N, O) intramolecular bifurcated (three‐centered) hydrogen bond with one hydrogen donor and two hydrogen acceptors causes a significant decrease of the ^1hJ(N,H) and ^2hJ(N,N) coupling constants across the N? H···N hydrogen bond and an increase of the ¹J(N,H) coupling constant across the N? H covalent bond in the 2,5‐disubsituted pyrroles. This occurs due to a weakening of the N? H···N hydrogen bridge resulting in a lengthening of the N···H distance and a decrease of the hydrogen bond angle at the bifurcated hydrogen bond formation. The gauge‐independent atomic orbital calculations of the shielding constants suggest that a weakening of the N? H···N hydrogen bridge in case of the three‐centered hydrogen bond yields a shielding of the bridge proton and deshielding of the acceptor nitrogen atom. The atoms‐in‐molecules analysis shows that an attenuation of the ^1hJ(N,H) and ^2hJ(N,N) couplings in the compounds with bifurcated hydrogen bond is connected with a decrease of the electron density ρ_H···N at the hydrogen bond critical point and Laplacian of this electron density ?²ρ_H···N. The natural bond orbital analysis suggests that the additional N? H···X interaction partly inhibits the charge transfer from the nitrogen lone pair to the σ*_{N? H} antibonding orbital across hydrogen bond weakening of the ^1hJ(N,H) and ^2hJ(N,N) trans‐hydrogen bond couplings through Fermi‐contact mechanism. An increase of the nitrogen s‐character percentage of the N? H bond in consequence of the bifurcated hydrogen bonding leads to an increase of the ¹J(N,H) coupling constant across the N? H covalent bond and deshielding of the hydrogen donor nitrogen atom. Copyright © 2010 John Wiley & Sons, Ltd.     

Charge‐Scaling Effect in Ionic Liquids from the Charge‐Density Analysis of N,N′‐Dimethylimidazolium Methylsulfate

The charge scaling effect in ionic liquids was explored on the basis of experimental and theoretical charge‐density analyses of [C₁MIM][C₁SO₄] employing the quantum theory of atoms in molecules (QTAIM) approach. Integrated QTAIM charges of the experimental (calculated) charge density of the cation and anion resulted in non‐integer values of ±0.90 (±0.87) e. Efficient charge transfer along the bond paths of the hydrogen bonds between the imidazolium ring and the anion was considered as the origin of these reduced charges. In addition, a detailed QTAIM analysis of the bonding situation in the [C₁SO₄]^? anion revealed the presence of negative π_O→σ*_S‐O hyperconjugation.     

Geminal 2J(29Si‐O‐29Si) couplings in oligosiloxanes and their relation to direct 1J(29Si‐13C) couplings

Absolute values of (79) geminal ²J(²⁹Si‐O‐²⁹Si) couplings were measured in an extensive series of (55) unstrained siloxanes dissolved in chloroform‐d. Signs of ²J(²⁹Si‐O‐²⁹Si) in some (9) silicon hydrides were determined relative to ¹J(²⁹Si‐¹H) which are known to be negative. It is supposed that positive sign of the ²J(²⁹Si‐O‐²⁹Si) coupling found in all studied hydrides is common to all siloxanes. Theoretical calculations for simple model compounds failed to reproduce this sign and so their predictions of bond length and angle dependences cannot be taken as reliable. Useful empirical correlations were found between the ²J(²⁹Si‐O‐²⁹Si) couplings on one side and the total number m of oxygen atoms bonded to the silicon atoms, sum of ²⁹Si chemical shifts or product of ¹J(²⁹Si‐¹³C) couplings on the other side. The significance of these correlations is briefly discussed. Copyright © 2011 John Wiley & Sons, Ltd.     

<Superscript>13</Superscript>C-<Superscript>13</Superscript>C spin-spin coupling constants in structural studies: XL. Conformational analysis of <Emphasis Type="Italic">N</Emphasis>-vinylpyrroles

Conformational analysis of ten N-vinylpyrroles was performed on the basis of experimental ¹³C-¹H and ¹³C-¹³C coupling constants and those calculated by high-level quantum-chemical methods, and principal relations between J _CC and J _CH values and stereochemical structure of these compounds were revealed.