The authors describe a fluorometric assay for microRNA. It is based on two-step amplification involving (a) strand displacement replication and (b) rolling circle amplification. The strand displacement amplification system is making use of template DNA (containing a sequence that is complementary to microRNA-21) and nicking enzyme sites. After hybridization, the microRNA strand becomes extended by DNA polymerase chain reaction and then cleaved by the nicking enzyme. The DNA thus produced acts as a primer in rolling circle amplification. Then, the DNA probe SYBR Green II is added to bind to ssDNA to generate a fluorescent signal which increases with increasing concentration of microRNA. The method has a wide detection range that covers the10 f. to 0.1 nM microRNA concentration range and has a detection limit as low as 1.0 fM. The method was successfully applied to the determination of microRNA-21 in the serum of healthy and breast cancer patients.
Graphical abstract Schematic of a fluorometric microRNA assay based on two-step amplification involving strand displacement replication and rolling circle amplification. DNA probe SYBR Green II is then bound to ssDNA to generate a fluorescent signal which increases with increasing concentration of microRNA.
The article reports an aptamer based assay for cocaine by employing graphene oxide and exonuclease III-assisted signal amplification. It is based on the following scheme and experimental steps: (1) Exo III can digest dsDNA with blunt or recessed 3-terminus, but it has limited activity to ssDNA or dsDNA with protruding 3-terminus; (2) GO can absorb the FAM-labeled ssDNA probe and quench the fluorescence of probe, while the affinity between FAM-labeled mononucleotide and GO is negligible; (3) Cocaine aptamer can be split into two flexible ssDNA pieces (Probe 1 and Probe 2) without significant perturbation of cocaine-binding abilities; (4) The triple complex consisting of Probe 1, Probe 2 and cocaine can be digested by Exo III with the similar efficiency as normal dsDNA. Cocaine aptamer is split into two flexible ssDNA pieces (Probe 2 and 3′-FAM-labeled Probe 1). Cocaine can mediate the cocaine aptamer fragments forming a triplex. The triple complex has unique characteristic with 3′-FAM-labeled blunt end at the Probe 1 and 3′-overhang end at Probe 2. If exonuclease III is added, it will catalyze the stepwise removal of fluorescein (FAM) labeled mononucleotides from the 3-hydroxy termini of the special triplex complex, resulting in liberation of cocaine. The cocaine released in this step can produce a new cleavage cycle, thereby leading to target recycling. Through such a cyclic bound-hydrolysis process, small amounts of cocaine can induce the cleavage of a large number of FAM-labeled probe 1. The cleaved FAM-labeled mononucleotides are not adsorbed on the surface of graphene oxide (GO), so a strong fluorescence signal enhancement is observed as the cocaine triggers enzymatic digestion. Under optimized conditions, the assay allows cocaine to be detected in the 1 to 500 nM concentration range with a detection limit of 0.1 nM. The method was applied to the determination of cocaine in spiked human plasma, with recoveries ranging from 92.0 to 111.8 % and RSD of <12.8 %.
A fluorometric ATP assay is described that makes use of carbon dots and graphene oxide along with toehold-mediated strand displacement reaction. In the absence of target, the fluorescence of carbon dots (with excitation/emission maxima at 360/447 nm) is strong and in the “on” state, because the signal probe hybridizes with the aptamer strand and cannot combine with graphene oxide. In the presence of ATP, it will bind to the aptamer and induce a strand displacement reaction. Consequently, the signal probe is released, the sensing strategy will change into the “off” state with the addition of graphene oxide. This aptasensor exhibits selective and sensitive response to ATP and has a 3.3 nM detection limit.
Graphical abstract Schematic of signal amplification by strand displacement in a carbon dot based fluorometric assay for ATP. This strategy exhibits high sensitivity and selectivity with a detection limit as low as 3.3 nM.
Stable copper nanoclusters (CuNCs) were prepared by utilizing D-penicillamine as both the stabilizer and reductant. The emission of the CuNCs (with excitation/emission peaks at 390/645 nm) is largely stabilized by coating with poly(sodium-p-styrenesulfonate) (PSS). Cytochrome c (Cyt c) quenches the fluorescence of the PSS-coated CuNCs, and this effect was exploited to design a quenchometric fluorometric assay for Cyt c. If trypsin is added to the loaded CuNCs, it will hydrolyze Cyt c to form peptide fragments, and fluorescence is gradually restored. A highly sensitive and fluorometric turn-off-on assay was constructed for sequential detection of Cyt c and trypsin. The linear ranges for Cyt c and trypsin are from 8.0 nM to 680 nM, and from 0.1 to 6.0 μg mL?1, and the lower detection limits are 0.83 nM and 20 ng mL?1 for Cyt c and trypsin, respectively.
Graphical abstract Schematic illustration of the fluorometric assay for trypsin based on the electron transfer between poly(p-styrenesulfonate)-protected copper nanoclusters (PSS-CuNCs) and cytochrome c (Cyt c).
The authors report on a simple strategy for sensitive determination of the activity of terminal deoxynucleotidyl transferase (TdT) using copper nanoclusters (CuNCs) as fluorescent probes. TdT-polymerized long chain AT-rich DNA serves as a template for the synthesis of the CuNCs, and TdT activity is detected fluorometrically at excitation/emission wavelengths of 340/570 nm. The protocol relies on the target-triggered formation of dsDNA polymers and in-situ formation of CuNCs. The calibration plot is linear in the 0.7 to 14 U L?1 activity range, with a 60 mU L?1 detection limit (at a signal-to-noise ratio of 3). The protocol was applied to determine TdT activity in acute lymphatic leukemia cells. This approach is selective, simple, convenient and cost-efficient because a complex DNA sequence is not required. In our perception, the method provides a viable new platform for monitoring the activity and inhibition of TdT.
Graphical abstract Based on the target-triggered formation of dsDNA polymers and in-situ formation of CuNCs with strong fluorescence, a turn-on fluorescence assay for TdT activity is presented.
A method is described for the determination of the polarity of mixed organic solvents by using the fluorescent probe Hostasol Red (HR) desposited on the outer surface of nanosized zeolite L. Organic solvents and their mixtures can be roughly classified according to their polarity with bare eyes and fluorometrically. Emission peaks range from 520 to 640 nm. Some solvents act as quenchers. The method is studied with series of protic and nonprotic solvents, and with selected mixtures of organic solvents.
Graphical abstract The dye Hostalene Red adsorbed on nanosized zeolite shows strong fluorescence solvatochromism. This can be exploited to quickly assess the polarity of solvents and solvent mixtures.
A metal-organic framework (MOF) was designed and prepared from luminescent Tb(III), adenosine diphosphate (ADP) and bipyridyl (Bipy). Its green fluorescence at 545 nm is shown to enable the fluorometric detection of cyanide ion based on the principle of π-conjugation-induced fluorescence enhancement. The fluorescence of the probe is strongly increased by cyanide due to extended π-conjugation between probe MOF and cyanide which sensitizes the fluorescence of Tb(III). This effect can be used to quantify cyanide at levels as low as 30 nM in aqueous solution. The method was applied to the determination of cyanide in saliva samples. The lack of interference by acetate and fluoride is a specific feature of this method. The method based on the principle of π-conjugation-induced fluorescence enhancement provides a new sensing way for widely used fluorescence assays.
Graphical abstract A cyanide-selective Tb-ADP-Bipy MOF was designed and synthesized for the detection of cyanide based on the principle of π-conjugation-induced fluorescence enhancement.
Two-dimensional (2D) nanomaterials are promising building blocks for sensors due to their unique physical, chemical, electronic, and optical properties. This review (with 253 references) first summarizes the historical developments of 2D nanomaterials and discusses the advantages of 2D nanomaterials when applied for constructing sensors. Next, their properties are discussed, with subsections on electronic, optical, mechanical and chemical properties. This is followed by an overview on methods for syntheses and the effects of positive and/or negative charges on the properties and in sensing applications. Then, recent advances in 2D nanomaterial-based electrochemical, fluorometric, colorimetric, electrochemiluminescent, photoelectrochemical, and field-effect transistor sensors are discussed. The discussion also includes the preparation of sensing elements, the roles of such nanomaterials, and assay strategies. Finally, on the basis of the current achievements in the field of 2D nanomaterials, the perspectives on the challenges and opportunities for the exploration of 2D nanomaterial-based sensors are put forward.
This review (with (318) refs) describes progress made in the design and synthesis of morphologically different metal oxide nanoparticles made from iron, manganese, titanium, copper, zinc, zirconium, cobalt, nickel, tungsten, silver, and vanadium. It also covers respective composites and their function and application in the field of electrochemical and photoelectrochemical sensing of chemical and biochemical species. The proper incorporation of chemical functionalities into these nanomaterials warrants effective detection of target molecules including DNA hybridization and sensing of DNA or the formation of antigen/antibody complexes. Significant data are summarized in tables. The review concludes with a discussion or current challenge and future perspectives.
This review (with 85 refs.) summarizes the recent literature on the adsorption of common aromatic pollutants by using modified metal-organic frameworks (MOFs). Four kinds of aromatic pollutants are discussed, namely benzene homologues, polycyclic aromatic hydrocarbons (PAHs), organic dyes and their intermediates, and pharmaceuticals and personal care products (PPCPs). MOFs are shown to be excellent adsorbents that can be employed to both the elimination of pollutants and to their extraction and quantitation. Adsorption mechanisms and interactions between aromatic pollutants and MOFs are discussed. Finally, the actual challenges of existence and the perspective routes towards future improvements in the field are addressed.
Graphical abstract Recent advance on adsorption of common aromatic pollutants including benzene series, polycyclic aromatic hydrocarbons, organic dyes and their intermediates, pharmaceuticals and personal care products by metal-organic frameworks.
Patients with prostate cancer and systemic lupus erythematosus exhibit reduced DNase I activity, and patients with myocardial infarction exhibit increased DNase I activity. So the assay of DNase I is of high importance. A colorimetric assay is described here for the determination of the activity of DNase. It is based on strand scission of dsDNA as catalyzed by DNase I. The products of digestion (nucleoside monophosphates) can better stabilize citrate capped AuNPs than dsDNA. In the absence of DNase I, the AuNPs aggregate in presence of NaCl and then display a blue color. In the presence of the analyte (DNase I), AuNPs do not aggregate but rather remain dispersed and display a red color. These findings were exploited to design a DNase I activity assay that is based on the measurement of ratio of absorbances at 520 nm (red) to 650 nm (blue). The detection limit for DNase I activity is found to be 7.1 U?L?1. In our perception, this assay has a large potential with respect to diagnoses of DNase I activity-related diseases and in drug screening.
Graphical Abstract A method is described for the determination of the activity of DNase I. It is based on the capability of nucleoside monophosphates (dNMPs; formed by DNase-catalyzed scission of dsDNA) to stabilize red gold NPs against NaCl-induced aggregation. AuNPs stabilized with dsDNA, in contrast, readily aggregate in presence of NaCl to form blue clusters.
A toehold-aided DNA recycling amplification technology was developed based on the combination of toehold-aided DNA recycling and the hemin/G-quadruplex label. The dsDNA formed between aptamer and DNA1 was first immobilized on magnetic beads. On addition of target analyte (exemplified here for riboflavin), the aptamer-riboflavin complex is formed and DNA1 is released by the beads. After magnetic separation, the supernatant containing the released DNA1 is added to a solution containing the hairpin capture DNA on magnetic beads. DNA1 will hybridize with the hairpin capture DNA via toehold binding and branch migration. This process will open the hairpin structure, and an external toehold is formed in the newly formed dsDNA. On addition of reporter DNA containing the G-quadruplex, it will interact with the formed dsDNA via toehold binding and branch migration, resulting in the releasing of DNA1 and capturing of reporter DNA on the magnetic beads. The released DNA1 will bind to another hairpin capture DNA which can start another round of DNA1 recycling. Chemiluminescence (CL) is generated by the G-quadruplex-hemin-luminol CL reaction system. Under optimal conditions, the calibration plot is linear in the 0.1 to 700 nM riboflavin concentration range, with a 30 pM detection limit (at a signal-to-noise ratio of 3). The method was successfully applied to the quantitation of riboflavin in spiked urine samples.
A study is presented on the binding kinetics and mechanism of the adsorption of dsDNA on citrate-capped gold nanoparticles (AuNPs). Methods include fluorescence titration, isothermal calorimetry (ITC) titration, dynamic light scattering and gel electrophoresis. It is found that the fluorescence of probe DNA (labeled with Rhodamine Green and measured at excitation/emission peaks of 498/531 nm) is quenched by addition of AuNPs. The Stern-Volmer quenching constant (Ksv) is 1.67?×?10^9 L·mol?1 at 308 K and drops with increasing temperature. The quenching mechanism is mainly static. The results of both fluorescence titrations and ITC show negative values for ΔH and ΔS values. This shows ion-induced dipole-dipole interaction to be the main attractive forces between dsDNA and AuNPs, while electrostatic interactions result in repulsion. The repulsive forces lead to a lower affinity between dsDNA and AuNPs (compared to single-strand DNA). It is also found that dsDNA can prevent the aggregation of AuNPs which is accompanied by a color change from red into blue. The visual detection limit with bare eyes for dsDNA1 is 36 pM. Based on these findings, a colorimetric method was developed to detect the proto-oncogene of serine/threonine-protein kinase B-Raf V600E point mutation in HT29, Ec109, A549, Huh-7 and SW480 cell lines.
Graphical abstract Schematic of the salt-induced aggregation of uncapped gold nanoparticles (AuNPs) which leads to a color change from red to blue. If the AuNPs are coated with dsDNA, aggregation is suppressed.
The authors describe a new kind of selection method (referred to as orientation selection) for improved screening for broad-spectrum lipopolysaccharides (LPSs) using unlabeled ssDNA aptamers. The method is based on the capture-SELEX technique using magnetic nanoparticles. LPS from Salmonella enterica serotype typhimurium was chosen as an exemplary target. Once the ssDNA library is preconcentrated to a certain degree, two Gram-negative bacteria were used as orientation molecules in the subsequent selection process. Using this strategy, one optimal aptamer ('EA7') was captured that has a high affinity (Kd = 102 ± 17 nM) for LPS and it was also confirmed that it can recognize three other bacterial LPSs. It is presumed that EA7 binds to the lipid A region of LPS. When using carboxyfluorescein labeled EA7, the observed fluorescence intensity and concentrations of four types of LPSs in drinking water are linearly correlated. The lower detection limit of the LPS is 3 ng·mL?1. Compared to multi-target mixed selection and conventional SELEX methods, the new orientation selection strategy produces results that are less uncertain.
Graphical abstract An improved orientation selection strategy in capture-SELEX procedures was developed to screen broad-spectrum aptamers against lipopolysaccharides by using magnetic nanoparticles. Two Gram-negative bacteria were used as orientation molecules after library preconcentrated to a certain degree.
This article reviews the progress made in the past 5 years in the field of direct and non-enzymatic electrochemical sensing of glucose. Following a brief discussion of the merits and limitations of enzymatic glucose sensors, we discuss the history of unraveling the mechanism of direct oxidation of glucose and theories of non-enzymatic electrocatalysis. We then review non-enzymatic glucose electrodes based on the use of the metals platinum, gold, nickel, copper, of alloys and bimetals, of carbon materials (including graphene and graphene-based composites), and of metal-metal oxides and layered double hydroxides. This review contains more than 200 refs.
Figure This article reviews the history of unraveling the mechanism of direct electrochemical glucose oxidation and the attempts to successfully develop non-enzymatic electrochemical glucose sensors over the past 5 years.
The authors describe a pipette type of biosensor for detecting target genes and using a zinc finger protein fused to luciferase (ZF luciferase). The ZF protein binds to a specific DNA sequence, and the target double-stranded (ds) DNA can be detected by monitoring the enzymatic activity of ZF luciferase. A small avidin-immobilized reaction plate is placed on a plastic pipette tip (referred to as Biologi tip). The dsDNA detection procedures are carried out by using a programmable dispensing robot equipped with a photodetector. These procedures include (a) the aspiration of an analyte to capture the biotinylated target dsDNA (a product of a polymerase chain reaction) on the small reaction plate inside the pipette tip, (b) the introduction of ZF luciferase and luciferin into the pipette tip, and (c) migration of the pipette tip to the detection port to measure bioluminescence on the small reaction plate. The emission originating from luciferase activity is observed on the reaction plate containing immobilized biotin-tagged target dsDNA, whereas plates containing non-target or biotinylated single-stranded DNA only do not yield a signal. The intensity of emission increases proportionally to the concentration of dsDNA, and the detection limit of the target dsDNA is as low as 62 pM. An actual genomic DNA sample from Escherichia coli O157 was successfully detected by this automatic analyzer using the Biologi tip equipped with a reaction plate. This indicates that this system has a large potential for practical applications, including in particular point-of-care analyses in hygiene control, food safety testing, and clinical diagnosis.
Graphical abstract A pipette-type biosensor was developed to detect target genes using a luciferase-fused zinc finger protein, where a small NeutrAvidin-immobilized reaction plate was placed on the tip, and the biotinylated target double-stranded DNA was detected by monitoring the bound luciferase activity.
The authors describe a method for the preparation of orange-red emissive carbon dots (CDs) with excitation/emission peaks at 520/582 nm. The CDs were hydrothermally prepared by a one-pot strategy from trimesic acid and 4-aminoacetanilide. The fluorescence of the CDs is strongly quenched by hydrogen peroxide. The oxidation of glucose by glucose oxidase (GOx) produces H2O2 that quenches the fluorescence via static quenching. Based on this phenomenon, a fluorometric method was established for the determination of glucose. Under the optimum conditions, response is linear in the 0.5 to 100 μM glucose concentration range, with a 0.33 μM limit of detection. The method is selective for glucose over its analogues and was successfully applied to the determination of glucose in diluted human serum and in urine from diabetics and healthy individuals. Recoveries from spiked samples range from 98.7 to 102.5%.
Nitrogen- and iron-containing carbon dots (N,Fe-CDs) are synthesized by hydrothermal treatment of branched polyethylenimine (BPEI) and hemin at 180 °C. The N,Fe-CDs are mainly doped with nitrogen and trace amounts of iron(III). The N,Fe-CDs also display intrinsic fluorescence with excitation/emission maxima at 365/452 nm and a quantum yield of 27 %. The nanodots are shown to act as peroxidase mimics by catalyzing the oxidation of tetramethylbenzidine (TMB) by hydrogen peroxide to form a blue product whose quantity can be determined by photometry at 652 nm. This was exploited to design colorimetric and fluorometric assays for dopamine (DA). The colorimetric assay is based on the oxidation of DA by H2O2 in presence of the N,Fe-CDs and TMB. It has an instrumental detection limit of 40 nM (at an S/N ratio of 3), and a visual detection limit of 0.4 μM. The fluorometric assay is based on an inner filter effect that is caused by the formation of oxidized TMB which overlaps (and absorbs) the emission of the N,Fe-CDs located at 452 nm. The fluorometric detection limit is as low as 20 nM (at an S/N ratio of 3).
Graphical abstract Carbon dots containing nitrogen and iron (N,Fe-CDs) were synthesized by hydrothermal treatment of branched polyethylenimine and hemin. The N,Fe-CDs display excellent fluorescent properties, peroxidase-like activity and potential application in colorimetric and fluorometric detection of dopamine.
Hetero-dimeric magnetic nanoparticles of the type Au-Fe3O4 have been synthesised from separately prepared, differently shaped (spheres and cubes), monodisperse nanoparticles. This synthesis was achieved by the following steps: (a) Mono-functionalising each type of nanoparticles with aldehyde functional groups through a solid support approach, where nanoparticle decorated silica nanoparticles were fabricated as an intermediate step; (b) Derivatising the functional faces with complementary functionalities (e.g. amines and carboxylic acids); (c) Dimerising the two types of particles via amide bond formation. The resulting hetero-dimers were characterised by high-resolution TEM, Fourier transform IR spectroscopy and other appropriate methods.
Graphical Abstract Nano-LEGO: Assembling two types of separately prepared nanoparticles into a hetero-dimer is the first step towards complex nano-architectures. This study shows a solid support approach to combine a gold and a magnetite nanocrystal.
Gold-silver nanoclusters (Au-AgNCs) were synthesized by simultaneous chemical reduction of Au(III) and Ag(I) ions in one pot, using bovine serum albumin as both a template and a reductant. The Au-AgNCs have an average size of 2.4 nm and display strong red fluorescence (with an emission peak at 610 nm on excitation at 360 nm). The fluorescence quantum yield can reach 18.6%. Fluorescence is strongly quenched by hypochlorite, while other common anions have minor (or no) effects on fluorescence. Based on these findings, a fluorometric method was developed for the determination of hypochlorite. The method has a linear response in the 0.7 to 15 μM concentration range, with a limit of detection as low as 80 nM. It was successfully applied to the determination of hypochlorite in (spiked) tap water.
Graphical abstract Gold-silver nanoclusters with strong red fluorescence were synthesized by simultaneous chemical reduction of Au(III) and Ag(I) ions in one pot, and a sensitive and selective method for the detection of hypochlorite was developed based on the quenching of the fluorescence of the nanoclusters.
