紫外薄层色谱法分离C15H18N4SO2和C13H19N3SO4

采用紫外薄层色谱法在硅胶GF254板上分离N-{2-[(2,2-二氰基-乙烯基)-甲基-氨基]-丙基}-4-甲基-苯磺酰胺(C_(15)H_(18)N_4SO_2)和4-甲基-N-{2-[甲基-(2-硝基-乙烯基)-氨基]-丙基}-苯磺酰胺(C_(13)H_(19)N_3SO_4)二种有机物的方法。硅胶GF254板由0.27mol/L,pH=7的EDTA溶液修饰,避免了这两种样品与板上少量无机金属离子发生络合作用;展开剂为乙酸乙酯-石油醚-乙醇-37.5%氨水(体积比为10∶10∶1∶1)。C_(15)H_(18)N_4SO_2和C_(13)H_(19)N_3SO_4的Rf值分别为0.64和0.48。用紫外薄层色谱法分离C_(15)H_(18)N_4SO_2和C_(13)H_(19)N_3SO_4具有操作简单,灵敏,准确的特点。     

异核双卤分子XY(XY=ClF,BrF,BrCl)与C_2H_2相互作用的量子化学研究

在MP2(full)水平上,采用全电子基组,对C_2H_2与XY(XY=Cl F,Br F,Br Cl)相互作用进行了研究.相互作用能在–9.2687 k J/mol至–20.8856 k J/mol之间.自然键轨道(NBO)理论分析显示复合物中电荷转移最多的是C_2H_2…Br F,为0.0319 a.u.;最小的是C_2H_2…Br Cl,为0.0164 a.u..分子中的原子(AIM)理论分析表明复合物中Y…π键的性质与氢键类似.对称匹配微扰理论(SAPT)能量分解显示三个复合物中静电能和诱导能占相互作用能的主体,二者占到总吸引能的70%以上,其中静电作用最大,占超过50%,色散作用最小.     

硝酸羟胺-(H_2O)_n复合物氢键相互作用的密度泛函研究

为研究硝酸羟胺-(H_2O)_n复合物的氢键作用,采用密度泛函B3LYP方法在6-311++G(d, p)基组水平上对硝酸羟胺-(H_2O)_n复合物的结构进行优化,采用MP2/6-311++G(d, p)方法,经基组叠加误差和零点能校正计算得到复合物的相互作用能.利用自然键轨道分析方法研究复合物氢键作用的本质,并对复合物中水分子的振动光谱进行分析.计算结果表明,硝酸羟胺-(H_2O)_n复合物存在着6个硝酸羟胺-H_2O稳定构型和8个硝酸羟胺-(H_2O)_2稳定构型,且最稳定构型的相互作用能分别为52.821 kJ·mol~(-1)和73.349 kJ·mol~(-1).在硝酸羟胺-(H_2O)_n复合物中,水中H-O伸缩振动频率明显红移,且红移增大的程度与复合物稳定化能的变化趋势基本一致.     

苯酚-水团簇C_6H_5OH(H_2O)_n(n=1-6)结构与电子性质的密度泛函理论研究

利用密度泛函理论,在B3LYP/6-31+G(d, p)基组水平上对苯酚-水团簇C_6H_5OH(H_2O)_n(n=1-6)的可能构型进行全优化,得到了团簇的稳定结构;在B3LYP/6-311++G(d, p)基组水平上计算得到了各团簇构型的总能量和结合能,结果显示,在团簇尺寸较小(n≤5)时,团簇C_6H_5OH(H_2O)_n的最稳定结构为平面的环状结构,团簇尺寸较大(n5)时,团簇C_6H_5OH(H_2O)_n的最稳定结构为三维立体结构.通过对团簇结合能的二阶差分、最高占据轨道与最低空轨道之间的能隙、费米能级和电离能的分析发现,团簇C_6H_5OH(H_2O)_2的最低能量结构具有较高的稳定性,可能具有幻数结构.     

吡嗪分子在硅(100)面吸附构型的XPS和NEXAFS谱理论研究（英文）

本文利用X射线谱研究了吡嗪(C_4H_4N_2)分子共价吸附于硅(100)面的几种吸附构型的几何结构和电子结构.利用密度泛函理论结合团簇模型,对预测的吸附结构的碳K壳层(1s)X射线光电子能谱(XPS)和近边X射线吸收精细结构(NEXAFS)谱进行了模拟.计算结果阐明了XPS和NEXAFS谱与不同吸附构型的对应关系.与XPS谱相比,NEXAFS谱对所研究的吡嗪/硅(100)体系的结构有明显的依赖性,可以很好地用于结构鉴定.根据碳原子的分类,研究了在NEXAFS光谱中不同化学环境下碳原子的光谱成分.     

叠氮乙烷二聚体分子间相互作用的理论研究

用abinitioHF/ 6 3 11+ +G 计算求得叠氮乙烷二聚体势能面上三种优化构型和电子结构 .经MP2电子相关校正和基组叠加误差 (BSSE)以及零点能 (ZPE)校正 ,求得分子间最大相互作用能为 -10 .45kJ/mol.二子体系间的电荷转移很少 .由自然键轨道 (NBO)分析揭示了相互作用的本质 .基于统计热力学求得温度为 2 0 0 .0 0～80 0 .0 0K从单体形成二聚体的热力学性质变化     

4-氨基-3,5-二硝基吡唑二聚体分子间相互作用的理论研究（英文）

在密度泛函(DFT)B3LYP/6-311++G~(**)水平下,求得4-氨基-3,5-二硝基吡唑(LLM-116)二聚体势能面上的4种全优化几何构型.经基组叠加误差(BSSE)和零点能(ZPE)校正,求得分子间最大相互作用能为-29.56 k J·mol~(-1).研究表明,其相互作用是放热过程,并随着温度的升高,相互作用减弱;自然键轨道(NBO)分析揭示了相互作用的本质;对优化构型进行振动分析,得其红外光谱,并基于统计热力学求得200.0-800.0 K温度范围从单分子形成二聚体的热力学性质变化.     

胸腺嘧啶-水分子团簇结构特性研究

根据量子化学理论,应用Gaussian09W程序中密度泛函理论(DFT)B3LYP方法,在6-311++G(d,p)基组水平上,研究了胸腺嘧啶与水分子团簇C_5H_6N_2O_2·(H_2O)n(n=1~4)分子团簇的基态结构以及红外光谱.通过对C_5H_6N_2O_2·(H_2O)n(n=1~4)分子团簇的结构优化,获得了团簇最稳定的结构.AIM程序分析表明:分子团簇间形成了氢键,而且电子密度ρ的强弱也反映了红移和蓝移的大小.之后使用Veda4软件对C_5H_6N_2O_2·(H_2O)n(n=1~4)分子团簇红外光谱的振动频率进行了分析,并对振动频率进行了比较.最后,分析四种最稳定结构的分子团簇的红外光谱表明O-H…O和N-H…O氢键的形成使得O-H和N-H之间伸缩频率减小,发生了红移;O-H…N氢键使O-H之间的弯曲振动频率变大,发生了蓝移.     

致密气在α-SiO_2(010)面吸附的第一性原理研究

致密气在砂岩储层中的赋存状态一直是人们研究的热点.为了论证致密气在石英砂岩表面吸附性的强弱,基于密度泛函理论的第一性原理方法,以CH_4分子为主要研究对象,研究了CH_4、C_2H_6、CO_2、N_2分子在α-SiO_2(010)面的吸附性质.结果表明:CH_4、C_2H_6、CO_2、N_2分子在α-SiO_2(010)面的吸附能力从小到大依次为CO_2N_2CH_4C_2H_6,其中CH_4分子在B12位的吸附能最低,为-0.5379 eV,几何结构变化最小,吸附最稳定,是一种物理吸附;烃类气体的吸附性比非烃类的吸附性强;不同高对称位的吸附能变化范围很小,气体在α-SiO_2(010)面的流动性很强;在B12位吸附后,CH_4分子的s态、p态电子密度整体向低能量区域偏移约3.2 eV,而α-SiO_2(010)表面硅原子的电子态密度曲线几乎不变.     

精确计算TATB分子间相互作用能并重新认识其作用本质

TATB炸药的钝感性质与其分子间强烈的相互作用密切相关，目前尚难以用实验方法直接准确地测定其分子间相互作用能。已发表的理论研究工作受当时计算方法和条件限制，计算结果误差较大、充满矛盾。本文用B3PW91-D3BJ/def2-TZVPP方法优化了TATB二聚体可能存在的六种构型的几何结构并作振动频率分析，发现仅有三种稳定构型，即氢键构型A，堆叠构型B和C，用MP2/def2-TZVPP方法重新优化了这三种构型的几何结构参数，并用于CCSD(T)/CBS方法计算，得到分子间相互作用能分别为A: -6.20，B: -15.45，C: -15.65 kcal/mol，CCSD(T)/CBS计算中发现构型B和C的高级校正项大约是分子间相互作用能的50%，是MP2方法不可能准确预测TATB二聚体堆叠构型分子间相互作用能的原因；本文还用新一代能量分解方法ALMO-EDA分析了TATB分子间相互作用本质，发现对于堆叠构型B和C，除了色散作用之外，静电吸引对决定TATB二聚体中的几何结构十分重要，TATB高能炸药良好的钝感性质起源于其分子间较强静电吸引的驱动和定向，使之形成稳定的堆叠结构，其稳定性来源于色散和静电的协同作用。     

Factors affecting the dimerization of persistent nitrogen‐centered 1‐phenyl urazole radicals to tetrazanes

1‐Phenyl urazole radicals are persistent air‐stable nitrogen‐centered radicals that engage in an equilibrium with the corresponding N―N tetrazane dimers in solution. While the equilibrium typically weakly favors the dimer form, for some 1‐phenyl urazole radicals bearing substituents at the ortho position of the benzene ring, the equilibrium instead strongly favors the dimer form. With the recent surge of interest in the properties and potential applications of heterocyclic radicals, the factors that affect this equilibrium are important to determine. We examined the effect of the extent of ortho substitution (none, 1, or 2 substituents) on the equilibrium by experimentally using variable temperature ¹H nuclear magnetic resonance and UV‐visible spectroscopy in addition to supporting computational investigations at the (U)B3LYP/6‐311G(d,p) level of theory. We confirmed that the equilibrium generally favored the dimer in all cases. However, the equilibrium was more favorable towards dimer formation for urazole radicals substituted with 1 and 2 ortho substituents on the aromatic ring. The activation enthalpies for dissociation of singly substituted dimers were greater than that for dimers without ortho substituents, but lower than that for doubly substituted dimers. The greater preference for dimer formation for the ortho‐substituted urazole radicals is attributed to a greater enthalpic advantage for N―N bond formation. This advantage may be traced to a higher concentration of spin density on the urazole unit of the radicals and a lesser deformation energy required for N―N bond formation.     

Mass spectrometric and ab initio study of the interaction between 9-methylguanine and amino acid amide group

The temperature dependent field ionization mass spectrometry method combined with ab initio calculations was used to determine the interaction energies and the structures of 9-methylguanine-acrylamide dimers. Acrylamide mimics the side chain amide group of the natural amino acids asparagine and glutamine. The experimental enthalpy of the dimer formation derived from the van't Hoff plot is ?59.5 ± 3.8 kJ mol^?1. The value is higher than interaction energies between acrylamide and other nucleic acid bases which were determined to be ?57.0 for 1-methylcytosine, ?52.0 for 9-methyladenine, and ?40.6 kJ mol^?1 for 1-methyl-uracil. In total, eight hydrogen bonded dimers formed by the three lowest energy 9-methylguanine tautomers and acrylamide were found in the quantum chemical calculations performed at the DFT/B3LYP/6-31++G?? and MP2/6-31++G?? levels of theory. The relative stability and the interaction energies of the dimers were calculated accounting for the basis set superposition error and the zero-point vibrational energy correction. The lowest energy dimer found in the calculations is formed by acrylamide (Ac) with the keto tautomer of 9-methylguanine (Gk). It is stabilized by two intermolecular H bonds, C6=O(Gk) · · · H—N(Ac) and Nl—H(Gk) · · ·O(Ac), and it is more stable than the second lowest energy dimer by ≈ 25 kJ mol^?1. The calculated interaction energies of the lowest energy 9-methylguanine-acrylamide dimer are ?65.0 kJ mol^?1 and ?67.7 kJ mol^?1 at the MP2 and DFT levels of theory, respectively. The experimental enthalpy of the dimer formation is in good agreement with both the calculated interaction energies of the GkAc dimer and much higher than the interaction energies calculated for all other 9-methylguanine-acrylamide dimers. This proved that only one dimer was present in the experimental samples. To verify whether acrylamide is a good model of the amino acid-amide group, we performed direct calculations of the 9-methylguanine-glutamine dimers at the same levels of theory as used for the complexes involving acrylamide. The interaction energies found for the lowest energy 9-methylguanine-glutamine dimer are ?65.1 kJ mon^?1 (MP2/6-31++G??) and ?66.2 kJ mol^?1 (DFT/B3LYP/6-31++G??) and these values are very close (within 0.5 kJ mol^?1) to the interaction energies obtained for the 9-methylguanine-acrylamide dimers.     

Mathematical simulation of interactions of protein molecules and prediction of their reactivity

A physical model of interactions of protein molecules has been developed. The regularities of their reactivity have been studied using electrostatics methods for two histone dimers H2A–H2B and H3–H4 assembled from monomers. The formation of histone dimers from different monomers has been simulated and their ability to the formation of stable compounds has been investigated by analyzing the potential energy matrix using the condition number. The results of a simulation of the electrostatic interaction in the formation of dimers from complete amino acid sequences of selected proteins and their truncated analogs have been considered. The calculations have been performed taking into account the screening of the electrostatic charge of charged amino acids for different concentrations of the monovalent salt using the Gouy–Chapman theory.     

Adsorption of Au and Pt dimers on Ge(001) and Si(001): A first-principles study

Based on first-principles total energy calculations, the adsorption of Au and Pt dimers on Ge(001) and Si(001) surfaces are investigated. We find that the Au dimer on both Ge(001) and Si(001) show a similar result with the most stable configuration C, parallel to the substrate dimer row and located in the trough between the dimer rows, and the most unstable configuration A, parallel to and on the top of the substrate dimer row. On the other hand, Pt dimer on Ge(001) prefer the configuration D, perpendicular to the substrate dimer row and located in the trough between the dimer rows, while Pt dimer on Si(001) prefer both A and D configurations. The different structural stabilities of Au and Pt dimers on Ge(001) and Si(001) surfaces are attributed to the different electronic structures of Au and Pt atoms. These results are discussed with the reported data for III, IV and V group elements on Si(001).     

A molecular dynamics study of boron and nitrogen in diamond

Based upon molecular dynamics simulation via the Tersoff many-body potential, we proposed the co-doping method for fabricating n-type diamond. We calculated the optimal co-doping configurations of n-type (nitrogen) and p-type (boron) dopants, the stable structure of a boron atom in diamond is associated with four nitrogen atoms placed at the nearest neighbour positions, the total energy of the system with the stable structure is 136 MeV lower than that of the system with the nitrogen atoms placed in others positions. The results indicated that the co-dopants of nitrogen and boron were the perfect candidates to make n-type diamond, and additional boron would increase the solubility limit of nitrogen in diamond, reduce the lattice-relaxation energy of crystal and improve its doping efficiency in diamond.     

Electrostatic potential of several small molecules from density functional theory

A number of density functional theory (DFT) methods were used to calculate the electrostatic potential for the series of molecules N2, F2, NH3, H2O, CHF3, CHCl3, C6H6, TiF4, CO(NH2)2 and C4H5N3O compared with QCISD (quadratic configuration interaction method including single and double substitutions) results. Comparisons were made between the DFT computed results and the QCISD ab initio ones and MP2 ab initio ones, compared with the root-mean-square deviation and electrostatic potential difference contours figures. It was found that the hybrid DFT method B3LYP, yields electrostatic potential in good agreement with the QCISD results. It is suggest this is a useful approach, especially for large molecules that are difficult to study by ab initio methods.     

Twisting of dimers on the Si(100) surface

We investigate the twisting of asymmetric dimers on the Si(100) surface, as predicted by the LEED results of Yang, Jona and Marcus. Minimisation of the MINDO/3 cluster energy yields no twisting for clusters containing a single dimer or a pair of parallel dimers. The long range electrostatic interaction of the dipoles associated with the charge transfer in the asymmetric dimer does indeed produce a twisting torque, but it is too small to account for the elastic distortion required by the LEED model.     

Crystal → nematic phase transition in the liquid crystalline system 1‐isothiocyanato‐4‐(trans‐4‐propylcyclohexyl) benzene (3CHBT) probed by temperature‐dependent micro‐Raman study and DFT calculations

Raman spectra of 3CHBT in unoriented form were recorded at 14 different temperature measurements in the range 25–55 °C, which covers the crystal → nematic (N) phase transition, and the Raman signatures of the phase transition were identified. The wavenumber shifts and linewidth changes of Raman marker bands with varying temperature were determined. The assignments of important vibrational modes of 3CHBT were also made using the experimentally observed Raman and infrared spectra, calculated wavenumbers, and potential energy distribution. The DFT calculations using the B3LYP method employing 6‐31G functional were performed for geometry optimization and vibrational spectra of monomer and dimer of 3CHBT. The analysis of the vibrational bands, especially the variation of their peak position as a function of temperature in two different spectral regions, 1150–1275 cm⁻¹ and 1950–2300 cm⁻¹, is discussed in detail. Both the linewidth and peak position of the ( C H ) in‐plane bending and ν(NCS) modes, which give Raman signatures of the crystal → N phase transition, are discussed in detail. The molecular dynamics of this transition has also been discussed. We propose the co‐existence of two types of dimers, one in parallel and the other in antiparallel arrangement, while going to the nematic phase. The structure of the nematic phase in bulk has also been proposed in terms of these dimers. The red shift of the ν(NCS) band and blue shift of almost all other ring modes show increased intermolecular interaction between the aromatic rings and decreased intermolecular interaction between two  NCS groups in the nematic phase. Copyright © 2009 John Wiley & Sons, Ltd.