Outliers detection in the statistical accuracy test of a p<Emphasis Type="Italic">K</Emphasis><Subscript>a</Subscript> prediction

The regression diagnostics algorithm REGDIA in S-Plus is introduced to examine the accuracy of pK _a predicted with four programs: PALLAS, MARVIN, PERRIN and SYBYL. On basis of a statistical analysis of residuals, outlier diagnostics are proposed. Residual analysis of the ADSTAT program is based on examining goodness-of-fit via graphical diagnostics of 15 exploratory data analysis plots, such as bar plots, box-and-whisker plots, dot plots, midsum plots, symmetry plots, kurtosis plots, differential quantile plots, quantile-box plots, frequency polygons, histograms, quantile plots, quantile-quantile plots, rankit plots, scatter plots, and autocorrelation plots. Outliers in pK _a relate to molecules which are poorly characterized by the considered pK _a program. Of the seven most efficient diagnostic plots (the Williams graph, Graph of predicted residuals, Pregibon graph, Gray L–R graph, Index graph of Atkinson measure, Index graph of diagonal elements of the hat matrix and Rankit Q–Q graph of jackknife residuals) the Williams graph was selected to give the most reliable detection of outliers. The six statistical characteristics, F_exp,R²,R_P²,MEP,AIC{F_{\rm exp},R^{2},R_{\rm P}^{2},{\it MEP},{\it AIC}}, and s in pK _a units, successfully examine the specimen of 25 acids and bases of a Perrin’s data set classifying four pK _a prediction algorithms. The highest values F_exp,R²,R_P²{F_{\rm exp},R^{2},R_{\rm P}^{2}} and the lowest value of MEP and s and the most negative AIC have been found for PERRIN algorithm of pK _a prediction so this algorithm achieves the best predictive power and the most accurate results. The proposed accuracy test of the REGDIA program can also be extended to test other predicted values, as log P, log D, aqueous solubility or some physicochemical properties.     

Kinetics of the uninhibited and ethanol-inhibited CoO,Co<Subscript>2</Subscript>O<Subscript>3</Subscript> and Ni<Subscript>2</Subscript>O<Subscript>3</Subscript> catalyzed autoxidation of sulfur(IV) in alkaline medium

For getting an insight into the mechanism of atmospheric autoxidation of sulfur(IV), the kinetics of this autoxidation reaction catalyzed by CoO, Co₂O₃ and Ni₂O₃ in buffered alkaline medium has been studied, and found to be defined by Eqs. I and II for catalysis by cobalt oxides and Ni₂O₃, respectively.

An exact expression for the wiener index of a TUC<Subscript>4</Subscript>C<Subscript>8</Subscript>(R) nanotorus

The Wiener index of a graph G is defined as , where V(G) is the set of all vertices of G and for denotes the length of a minimal path between x and y. A C ₄ C ₈ net is a trivalent decoration made by alternating squares C ₄ and octagons C ₈. It can cover either a cylinder or a torus. In this paper, an algorithm for computing the distance matrix of a C ₄ C ₈(R) nanotorus T = T[p,q] is given. Using this matrix, the Wiener index of T is computed.     

Crystalline inclusion compounds of tetrabenzo-18-crown-6 with uncharged organic molecules. Solid-state structure of the nitroethane complex

Diethylaminoethyl (DEAE) groups were introduced into -cyclodextrin (-CD) and -CD. The products, DEAE-CDs with various numbers of substituents, trappedp-nitrophenoxide and 3,4-dinitrophenoxide preferentially over their respective conjugate acids. This caused a decreased pK _a of the guest nitrophenol. Some signals of the proton-NMR of both guest nitrophenol and host DEAE-CD changed upon host-guest interaction. The relation between the number of DEAE groups and the extent of the pK _a decrease, as well as association constants, is discussed.     

Estimation of the pK a of the amine groups of benzhydrylamine resin and its lysyl derivative by measurement of swelling

Summary For better evaluation of the potential of benzhydrylamine resin (BHAR), used as a solid support for peptide synthesis, as a novel anion-exchange resin, the pK _a of its amine group was estimated by microscopic measurement of the sizes of the dry and swollen beads. Using the volume of the bead occupied by the solvent (as a percentage) as the swelling parameter, a plot of the degree of swelling of BHAR loaded with 2.4 mmol g^–1 amine groups against the pH of the medium produced a decreasing sigmoidal-type curve with increasing pH. By considering the point of inflection of the curve, a pK _a value of approximately 7.5 was estimated for the amine group of the BHAR. The same approach was also applied to the lysyl derivative of the BHAR (Lys-BHAR) and pK _a values around 6.5 and 10.0 were obtained for the and amine groups, respectively.     

Capillary zone electrophoresis of basic drugs in non-aqueous acetonitrile with buffers based on a conventional pH scale

Summary The pK _a ^* values of 10 nitrogen-containing basic drugs in non-aqueous acetonitrile were determined from the pH^* dependence of their electrophoretic mobilities. The pH^* scale in the organic solvent was established using background electrolytes with known conventional pK _a ^* values, making further calibration with reference pH electrodes unnecessary. In acetonitrile the pK _a ^* values of analytes (or their conjugated cation acids, BH⁺, respectively) were 5.2±8.9 pK units>those in water. The observed change in pK _a ^* values of cationic analytes was, however, much less than the known respective change for neutral acids type HA. From the pK _a ^* values and the actual mobilities, it is possible to predict pH^* conditions to enable separation of analytes, and this was demonstrated for two pairs of common drugs.     

The Radial Distribution of Ions and Electrons in RF Inductively Coupled H<Subscript>2</Subscript>/T<Subscript>2</Subscript>B Plasmas

A glow discharge polymer (GDP) was fabricated using trans-2-butene (T₂B) and hydrogen (H₂) via a plasma-enhanced chemical vapor deposition (PECVD) system. The uniformity of the GDP films was significantly affected by the radial distribution of the H₂/T₂B plasma parameters. The plasma properties while discharging by a multi-carbon gas source of mixed H₂/T₂B were investigated during the GDP deposition process. The main positive ions and ion energy distributions in inductively coupled H₂/T₂B plasmas were analyzed by energy-resolved mass spectrometer (MS), and the electron density and the effective electron temperature were mainly analyzed using a Langmuir probe. The MS results show that the main positive ions in the plasmas are \({\text{C}}_{ 2} {\text{H}}_{ 4}^{ + }\), \({\text{C}}_{ 2} {\text{H}}_{ 6}^{ + }\), \({\text{C}}_{ 3} {\text{H}}_{ 3}^{ + }\), \({\text{C}}_{ 3} {\text{H}}_{ 6}^{ + }\), \({\text{C}}_{ 3} {\text{H}}_{ 8}^{ + }\), \({\text{C}}_{ 4} {\text{H}}_{ 5}^{ + }\), \({\text{C}}_{ 4} {\text{H}}_{ 1 0}^{ + }\), \({\text{C}}_{ 5} {\text{H}}_{ 5}^{ + }\), and \({\text{C}}_{ 5} {\text{H}}_{ 7}^{ + }\) with mass-to-charge ratios (m/e) of 28, 30, 39, 42, 44, 53, 58, 65, and 67, respectively. For a normalized ion intensity, the relative intensities of saturated CH ions increase with increasing radial distance, while the unsaturated CH ions decrease with increasing radial distance. The ion energy distribution of \({\text{C}}_{ 2} {\text{H}}_{ 6}^{ + }\) (m/e = 30) presents a bimodal structure. Additionally, both the electron density and the effective electron temperature decrease with increasing radial distance.     

PbCu3(OH)(NO3)(SeO3)3·1/2H2O und Pb2Cu3O2(NO3)2(SeO3)2: Synthese und Kristallstrukturuntersuchung

Crystals of PbCu₃(OH)(NO₃)(SeO₃)₃·1/2H₂O [a=7.761(3)Å,b=9.478(4)Å,c=9.514(4)Å, =66.94(2)°, =69.83(2)°, =81.83(2)°, space group P ,Z=2] and Pb₂Cu₃O₂(NO₃)₂(SeO₃)₂ [a=5.884(2)Å,b=12.186(3)Å,c=19.371(4)Å, space group Cmc2₁,Z=4] were synthesized under hydrothermal conditions. Their crystal structures were refined with three-dimensional X-ray data toR _w=0.033 resp. 0.055. In PbCu₃(OH)(NO₃)(SeO₃)₃·1/2H₂O the Cu atoms are [4+1] and [4+2] coordinated and via SeO₃ groups a three-dimensional atomic arrangement is built up. In Pb₂Cu₃O₂(NO₃)₂(SeO₃)₂ there are sheets, which are connected only via Pb-O bonds ranging from 2.98 Å to 3.16 Å.

     

Formation,characterization and stabilization of water-soluble colloidal MnO<Subscript>2</Subscript> in the oxidation of methionine,thiourea and thioacetamide by permanganate

Stabilization and characterisation of water soluble colloidal MnO₂ during the oxidation of sulphur-containing organic reductants “thiourea, thioactamide and methionine” by permanganate in aqueous neutral media are reported for the first time. Upon addition of permanganate to a solution of methionine, a transient species appears within the time of mixing, which is stable for several weeks. On the other hand, the transient species is unstable in the presence of thiourea and thioacetamide, respectively. The nature of manganese (IV) species present in the solution was characterized by spectrophotometric and coagulation measurements. On addition of HClO₄, there is a decrease in the absorbance of the reaction mixture. Under pseudo first-order conditions ([reductants] > []), the reduction rate was very fast up to the formation of water soluble colloidal MnO₂. The effect of various parameters, such as hydrogen ion concentration, amount of and concentration of reductants were investigated. Mechanisms consistent with the observed results have been proposed and discussed.     

Calculations of pKa values of carboxylic acids in aqueous solution using density functional theory

With the specific aim of calculating the acidity equilibrium constant (K_a) of carboxylic acids in aqueous solution we investigated the solute-solvent interactions of these acids and their corresponding anions. The pK_a (−lg K_a) values have been calculated using density functional theory (DFT). The polarized continuum model (PCM) is used to describe the solvent. Using these methods, we successfully predicted the pK_as of 66 carboxylic acids in aqueous with the average error of 0.5 in pK_a units. Two different thermodynamic cycles have been studied. The theoretical values are in better agreement with the experimental results for those acids with moderate strength of acidity with the pK_a value higher than 3.     

Binuclear cobalt(II/II) and cobalt(II/III) chelates with O<Subscript>2</Subscript>N<Subscript>2</Subscript> ligands: synthesis,structure and magnetic studies

Abstract  The title complexes and have been synthesized in excellent yields by reacting Co(OAc)₂·4H₂O with H₂L¹ and H₂L², respectively, in acetonitrile solution. Here, [L¹]²⁻ and [L²]²⁻ are the deprotonated forms of N,N-bis(2-hydroxybenzyl)-N′,N′-dimethylethylenediamine and N,N-bis(2-hydroxybenzyl)-2-picolylamine, respectively. The crystal structures of and were determined by x-ray crystallography. In , each cobalt atom has distorted trigonal bipyramid geometry, while in , each cobalt atom has distorted octahedral geometry. Variable temperature magnetic moment measurements show weak antiferromagnetic interaction in . The magnetic characterization for is in agreement with the presence of Co(II) and Co(III) centers. Graphical Abstract  The title complexes and have been synthesized in excellent yields by reacting Co(OAc)₂·4H₂O with dianionic N₂O₂ coordinating ligands. In complex 1, each cobalt atom has distorted trigonal bipyramid geometry, while in complex 2, each cobalt atom has distorted octahedral geometry. Variable temperature magnetic moment measurements show weak antiferromagnetic interaction in complex 1. The magnetic characterization for complex 2 is in agreement with the presence of Co(II) and Co(III) centers. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

What are the pKa values of organophosphorus compounds?

A first-principle theoretical protocol was developed, which could successfully predict the pK_a values of a number of amines and thiols in DMSO with a precision of about 1.1 pK_a unit. Using this protocol we calculated the pK_a values of diverse types of organophosphorus compounds in DMSO. The accuracy of these predicted values was estimated to be about 1.1 pK_a because phosphorus is in the same group as nitrogen and in the same period as sulfur. The theoretical predictions were also consistent with all the available experimental data. Thus, a scale of reliable pK_a values was constructed for the first time for organophosphorus. These pK_a values would be helpful to synthetic chemists who need to design the experimental conditions for handling deprotonated organophosphorus. On the basis of these pK_a values we also studied, for the first time, some interesting topics such as the substituent effects on the pK_a values of various types of organophosphorus, and the differences between the pK_a values of organophosphorus and organic amines.     

Investigation of the Role of Ionic Liquids in Tuning the p<Emphasis Type="Italic">K</Emphasis><Subscript>a</Subscript> Values of Some Anionic Indicators

The effect of imidazolium-based ionic liquids, ([C₁₂mim][Cl] and [C₈mim][Cl]), on the acid-base equilibria of two sulfonated indicators has been studied. The presence of ILs leads to decreased pK _a values because of the stronger electrostatic interaction of cationic ILs with the basic forms of the indicators with more negative charge. The longer alkyl side chain of [C₁₂mim][Cl] compared to [C₈mim][Cl] results in stronger hydrophobic interaction of this IL with the basic forms of the dyes leading to a more effective decrease in the pK _a values. Also, the transition points and transition intervals of the acid-base titration curves of the indicators were affected by the presence of ILs. It was found that the IL interaction with acid-base indicators also results in sharpening the acid-base titration curves of the indicators. From these observations, it is concluded that the presence of ILs can tune the pK _a values of indicators. All the experiments were performed spectrophotometrically and the results were obtained using curve fitting methods.     

Thermochemical Properties of Dissolution of Nicotinic Acid C<Subscript>6</Subscript>H<Subscript>5</Subscript>NO<Subscript>2</Subscript>(s) in Aqueous Solution

Nicotinic acid (also known as niacin) was recrystallized from anhydrous ethanol. X-ray crystallography was applied to characterize its crystal structure. The crystal belongs to the monoclinic system, space group P2₍₁₎/c. The crystal cell parameters are a = 0.71401(4) nm, b = 1.16195(7) nm, c = 0.71974(6) nm, α = 90°, β = 113.514(3)°, γ = 90° and Z = 4. Molar enthalpies of dissolution of the compound, at different molalities m/(mol·kg^?1) were measured with an isoperibol solution–reaction calorimeter at T = 298.15 K. The molar enthalpy of solution at infinite dilution was calculated, according to Pitzer’s electrolyte solution model and found to be \( \Delta_{\text{sol}} H_{m}^{\infty } = ( 2 7. 3 \pm 0. 2) \) kJ·mol^?1 and Pitzer’s parameters (\( \beta_{{\text{MX}}}^{{\text{(0)}L}} \), \( \beta_{{\text{MX}}}^{{\text{(1)}L}} \) and \( C_{{\text{MX}}}^{\phi L} \)) were obtained. The values of apparent relative molar enthalpies (\( {}^{\phi }L \)) and relative partial molar enthalpies (\( \overline{{L_{2} }} \) and \( \overline{{L_{1} }} \)) of the solute and the solvent at different molalities were derived from the experimental enthalpy of dissolution values of the compound. Also, the standard molar enthalpy of formation of the anion \( {\text{C}}_{ 6} {\text{H}}_{ 4} \text{NO}_{2}^{-} \) in aqueous solution was calculated to be \( {\Delta_{\text{f}}^{} H}_{\text{m}}^{\text{o}} ({\text{C}}_{ 6} {\text{H}}_{ 4} {\text{NO}}_{2}^{-} \text{,aq}) = - \left( {603.2 \pm 1.2} \right)\;{\text{kJ}}{\cdot}{\text{mol}}^{-1} \).     

Conformation dependence of pKa’s of the chromophores from the purple asFP595 and yellow zFP538 fluorescent proteins

Two members of the green fluorescent protein family, the purple asFP595 and yellow zFP538 proteins, are perspective fluorescent markers for use in multicolor imaging and resonance energy-transfer applications. We report the results of quantum based calculations of the solution pK_a values for selected protonation sites of the denatured asFP595 and zFP538 chromophores in the trans- and cis-conformations in order to add in the interpretation of photo-physical properties of these proteins. The pK_a values were determined from the theromodynamic cycle based on B3LYP/6-311++G(2df, 2p) calculations of the gas phase free energies of the molecules and the B3LYP/6-311++G(d, p) calculations of solvation energies. The results show that the pK_a’s of the protonation sites of the chromophore from asFP595 noticeably depend on the isomer conformation (cis- or trans-), while those of zFP538 are much less sensitive to isomerization.     

Molecular Structure and Conformation of p-Bis(trimethylsilyl)benzene: A Study by Gas-Phase Electron Diffraction and Theoretical Calculations

The molecular structure and conformation of p-bis(trimethylsilyl)benzene have been investigated by gas-phase electron diffraction, ab initio MO calculations at the HF/6-31G*, MP2(f.c.)/6-31G*, and B3LYP/6-31G* levels, and MM3 molecular mechanics calculations. The calculations indicate the syn- and anti-coplanar conformations, with two bonds in the plane of the benzene ring, to be energy minima. The perpendicular conformations, with two bonds in a plane orthogonal to the ring plane, are transition states. The two coplanar conformers have nearly the same energy with a low interconversion barrier, 0.3–0.5 kJ mol^–1. The calculated lengths of the and bonds differ by only a few thousandths of an angstrom, in agreement with electron diffraction results from molecules containing either or bonds. The geometrical distortion of the benzene ring in p-bis(trimethylsilyl)-benzene may be described by superimposing independent distortions from each of the two SiMe₃ groups. The electron diffraction intensities from a previous study (Rozsondai, B.; Zelei, B.; Hargittai, I. J. Mol. Struct. 1982, 95, 187) have been reanalyzed, imposing constraints from the theoretical calculations, and using a model based on a 1:1 mixture of the two coplanar conformers. The effective torsion angles of the SiMe₃ groups may indicate nearly free rotation. Important geometrical parameters from the present electron diffraction analysis are , and . While the mean bond lengths are virtually the same from the previous and present analyses, the new ipso angle is in better agreement with the MO calculations [HF, 116.9° MP2(f.c.), 117.1° B3LYP, 116.9°].     

Hydrogen bond interactions at the TiO2 surface: Their contribution to the pH dependent photo-catalytic degradation of p-nitrophenol

We have obtained pK_a values of p-nitrophenol–TiO₂ by measuring the adsorption equilibrium constants of p-nitrophenol (PNP) on the TiO₂ surface at different pH values. These values have been obtained from Langmuir isotherms and from a plot of 1/rate vs. 1/[PNP]_o obtained during TiO₂ catalyzed solar light photo-degradation of PNP. Two limit equilibrium constants are readily obtained depending on the solution pH: at pH 5 at which the TiO₂ surface is mainly positively charged and at pH 8 when it is negatively charged. With these and other adsorption equilibrium constants and the PNP pK_a value in solution, thermodynamic cycles are established in order to obtain the PNP pK_a when it is adsorbed on positively charged, neutral and negatively charged TiO₂ surfaces. From these pK_a values useful information on the PNP–TiO₂ interaction is readily obtained. For instance, the PNP nitro group interacts with the TiO₂ surface via a hydrogen bond, arising from the complex of water molecules with the Ti⁴⁺ ions on its surface. The weaker the hydrogen bond donor, the stronger the oxygen nitro group basicity. Therefore, pK_a changes on the phenolic hydroxyl group result from these interactions. Linear free energy correlations, maximum PNP adsorption capacity values (Q_L) and FTIR ATR, spectrum support this proposal. A k_obs vs. pH degradation profile of p-nitrophenol is also provided.     

Preparation of highly active photocatalyst anatase TiO<Subscript>2</Subscript> by mixed template method

TiO₂ nanocrystals with diameters 8–10 nm have been prepared through sol–gel method using a mixed template of polyethylene glycol (PEG) and cetytrimethylammonium bromide (CTAB) at low temperature. The samples were characterized by X-ray diffraction (XRD), transmission electron microscopy (TEM), high-resolution (HR) TEM and fourier transform infrared spectroscopy (FT-IR) etc. XRD analysis showed the TiO₂ photocatalysts prepared with mixed template are pure anatase. FTIR spectrum revealed that the cationic surfactant provides CTA⁺ molecules and bonds to Ti–O to prevent the condensation reaction. PEG plays a dispersant role in controlling the structure of nano-TiO₂ particles. CTAB and PEG incorporated with each other to restrain the growth of crystal nucleus and control the size of grain. The self-assembling process has been confirmed by HRTEM. PEG played different role in mixed template from the single template. The photocatalytic activity of samples was determined by using as a model reaction. The results showed that TiO₂ photocatalysts with mixed template have higher photocatalytic activity than P25.     

Calorimetric study of melts in the System KF - K<Subscript>2</Subscript>NbF<Subscript>7</Subscript>

The relative enthalpies of melts in the system KF - K₂NbF₇ were measured by drop-calorimetry at the temperatures 1058, 1140 and 1208 K as a function of composition. Heat capacities of melted mixtures and enthalpies of mixing were determined using the experimental data. The molar heat capacity of melts diverges slightly from additivity. The molar enthalpy of mixing of melts shows small negative deviation from ideality which decreases with decreasing temperature. The thermal effect at mixing was assigned predominantly to association reactions producing more complex fluoroniobate anions.