Room‐temperature scavengers for macromolecular crystallography: increased lifetimes and modified dose dependence of the intensity decay

The advent of highly intense wiggler and undulator beamlines has reintroduced the problem of X‐ray radiation damage in protein crystals even at cryogenic temperatures (100 K). Although cryocrystallography can be utilized for the majority of protein crystals, certain macromolecular crystals (e.g. of viruses) suffer large increases in mosaicity upon flash cooling and data are still collected at room temperature (293 K). An alternative mechanism to cryocooling for prolonging crystal lifetime is the use of radioprotectants. These compounds are able to scavenge the free radical species formed upon X‐ray irradiation which are thought to be responsible for part of the observed damage. Three putative radioprotectants, ascorbate, 1,4‐benzoquinone and 2,2,6,6‐tetramethyl‐4‐piperidone (TEMP), were tested for their ability to prolong lysozyme crystal lifetimes at 293 K. Plots of relative summed intensity against dose were used as a metric to assess radioprotectant ability: ascorbate and 1,4‐benzoquinone appear to be effective, whereas studies on TEMP were inconclusive. Ascorbate, which scavenges OH radicals (k_OH = 8 × 10⁹ M^?1 s^?1) and electrons with a lower rate constant (k_e‐(aq) = 3.0 × 10⁸ M^?1 s^?1), doubled the crystal dose tolerance, whereas 1,4‐benzoquinone, which also scavenges both OH radicals (k_OH = 1.2 × 10⁹ M^?1 s^?1) and electrons (k_e‐(aq) = 1.2 × 10¹⁰ M^?1 s^?1), offered a ninefold increase in dose tolerance at the dose rates used. Pivotally, these preliminary results on a limited number of samples show that the two scavengers also induced a striking change in the dose dependence of the intensity decay from a first‐order to a zeroth‐order process.     

Catalysis by hydrogen chloride in the gas‐phase elimination kinetics of 2‐phenyl‐2‐propanol and 3‐methyl‐1‐buten‐3‐ol

A homogeneous, molecular, gas‐phase elimination kinetics of 2‐phenyl‐2‐propanol and 3‐methyl‐1‐ buten‐3‐ol catalyzed by hydrogen chloride in the temperature range 325–386 °C and pressure range 34–149 torr are described. The rate coefficients are given by the following Arrhenius equations: for 2‐phenyl‐2‐propanol log k₁ (s^?1) = (11.01 ± 0.31) ? (109.5 ± 2.8) kJ mol^?1 (2.303 RT)^?1 and for 3‐methyl‐1‐buten‐3‐ol log k₁ (s^?1) = (11.50 ± 0.18) ? (116.5 ± 1.4) kJ mol^?1 (2.303 RT)^?1. Electron delocalization of the CH₂?CH and C₆H₅ appears to be an important effect in the rate enhancement of acid catalyzed tertiary alcohols in the gas phase. A concerted six‐member cyclic transition state type of mechanism appears to be, as described before, a rational interpretation for the dehydration process of these substrates. Copyright © 2007 John Wiley & Sons, Ltd.     

Kinetics of the gas‐phase homogeneous unimolecular elimination of selected ethyl esters of 2‐oxo‐carboxylic acids

The gas‐phase elimination kinetics of selected ethyl esters of 2‐oxo‐carboxylic acid have been studied over the temperature range of 270–415 °C and pressures of 37–114 Torr. The reactions are homogeneous, unimolecular, and follow a first‐order rate law in a seasoned static reaction vessel, with an added free radical suppressor toluene. The observed overall and partial rate coefficients are expressed by the following Arrhenius equations:

• Ethyl oxalyl chloride
• log k_overall (s^?1) = (13.22 ± 0.45) ? (179.4 ± 4.9) kJ mol^?1 (2.303 RT)^?1
• Ethyl piperidineglyoxylate
• log k_(CO2) (s^?1) = (12.00 ± 0.30) ? (191.2 ± 3.9) kJ mol^?1 (2.303 RT)^?1
• log k_(CO) (s^?1) = (12.60 ± 0.09) ? (210.7 ± 1.2) kJ mol^?1 (2.303 RT)^?1
• log k_t(overall) (s^?1) = (12.22 ± 0.26) ? (193.4 ± 3.4) kJ mol^?1 (2.303 RT)^?1
• Ethyl benzoyl formate
• log k_(CO2) (s^?1) = (12.89 ± 0.72) ? (203.8 ± 9.0) kJ mol^?1 (2.303 RT)^?1
• log k_(CO) (s^?1) = (13.39 ± 0.31) ? (213.3 ± 3.9) kJ mol^?1 (2.303 RT)^?1
• log k_t(overall) (s^?1) = (13.24 ± 0.60) ? (205.8 ± 7.6) kJ mol^?1 (2.303 RT)^?1

The kinetic and thermodynamic parameters of these reactions, together with those reported in the literature, lead to consider three different mechanistic pathways of elimination. Copyright © 2010 John Wiley & Sons, Ltd.     

Kinetic study on the aromatic nucleophilic substitution reaction of 3,6‐dichloro‐1,2,4,5‐tetrazine by biothiols

The aromatic nucleophilic substitution reaction of 3,6‐dichloro‐1,2,4,5‐tetrazine (DCT) with a series of biothiols RSH: (cysteine, homocysteine, cysteinyl–glycine, N‐acetylcysteine, and glutathione) is subjected to a kinetic investigation. The reactions are studied by following spectrophotometrically the disappearance of DCT at 370 nm. In the case of an excess of N‐acetylcysteine and glutathione, clean pseudo first‐order rate constants (k_obs1) are found. However, for cysteine, homocysteine and cysteinyl–glycine, two consecutive reactions are observed. The first one is the nucleophilic aromatic substitution of the chlorine by the sulfhydryl group of these biothiols (RSH) and the second one is the intramolecular and intermolecular nucleophilic aromatic substitutions of their alkylthio with the amine group of RSH to give the di‐substituted compound. Therefore, in these cases, two pseudo first‐order rate constants (k_obs1 and k_obs2, respectively) are found under biothiol excess. Plots of k_obs1 versus free thiol concentration at constant pH are linear, with the slope (k_N) independent of pH (from 6.8 to 7.4). The kinetic data analysis (Brønsted‐type plot and activation parameters) is consistent with an addition–elimination mechanism with the nucleophilic attack as the rate‐determining step. Copyright © 2014 John Wiley & Sons, Ltd.     

Joint theoretical and experimental study of the gas‐phase elimination kinetics of tert‐butyl ester of carbamic,N, N‐dimethylcarbamic,N‐hydroxycarbamic acids and 1‐(tert‐butoxycarbonyl)‐imidazole

The gas‐phase elimination kinetics of the title compounds were carried out in a static reaction system and seasoned with allyl bromide. The working temperature and pressure ranges were 200–280 °C and 22–201.5 Torr, respectively. The reactions are homogeneous, unimolecular, and follow a first‐order rate law. These substrates produce isobutene and corresponding carbamic acid in the rate‐determining step. The unstable carbamic acid intermediate rapidly decarboxylates through a four‐membered cyclic transition state (TS) to give the corresponding organic nitrogen compound. The temperature dependence of the rate coefficients is expressed by the following Arrhenius equations: for tert‐butyl carbamate logk₁ (s^?1) = (13.02 ± 0.46) – (161.6 ± 4.7) kJ/mol(2.303 RT)^?1, for tert‐butyl N‐hydroxycarbamate logk₁ (s^?1) = (12.52 ± 0.11) – (147.8 ± 1.1) kJ/mol(2.303 RT)^?1, and for 1‐(tert‐butoxycarbonyl)‐imidazole logk₁ (s^?1) = (11.63 ± 0.21)–(134.9 ± 2.0) kJ/mol(2.303 RT)^?1. Theoretical studies of these elimination were performed at Møller–Plesset MP2/6‐31G and DFT B3LYP/6‐31G(d), B3LYP/6‐31G(d,p) levels of theory. The calculated bond orders, NBO charges, and synchronicity (Sy) indicate that these reactions are concerted, slightly asynchronous, and proceed through a six‐membered cyclic TS type. Results for estimated kinetic and thermodynamic parameters are discussed in terms of the proposed reaction mechanism and TS structure. Copyright © 2007 John Wiley & Sons, Ltd.     

Reactions of O‐aryl S‐aryl dithiocarbonates with secondary alicyclic amines in aqueous ethanol. Kinetics and mechanism

The reactions of O‐(4‐methylphenyl) S‐(4‐nitrophenyl), O‐(4‐chlorophenyl) (4‐nitrophenyl), O‐(4‐chlorophenyl) S‐phenyl, and O‐(4‐methylphenyl) S‐phenyl dithiocarbonates ( 1 , 2 , 3 , and 4 , respectively) with a series of secondary alicyclic (SA) amines are subjected to a kinetic investigation in 44 wt% ethanol‐water, at 25.0 °C and an ionic strength of 0.2 M. The reactions are followed spectrophotometrically. Under amine excess, pseudo‐first‐order rate coefficients (k_obs) are found. For some of the reactions, plots of k_obs vs. free amine concentration at constant pH are linear but others are nonlinear upwards. This kinetic behavior is in accordance with a stepwise mechanism with two tetrahedral intermediates, one zwitterionic (T^±) and the other anionic (T^?). In some cases, there is a kinetically significant proton transfer from T^± to an amine to yield T^?. Values of the rate micro constants k₁ (amine attack to form T^±), k_?1 (its back step), k₂ (nucleofuge expulsion from T^±), and k₃ (proton transfer from T^± to the amine) are determined for some reactions. The Brønsted plots for k₁ are linear with slopes β₁ = 0.2–0.4 in accordance with the slope values found when T^± formation is the rate‐determining step. The sensitivity of log k₁ and log k_?1 to the pK_a of the amine, leaving and non‐leaving groups are determined by a multiparametric equation. For the reactions of 1 – 4 with 1‐formylpiperazine and those of 3 and 4 with morpholine the k₂ and k₃ steps are rate determining. Copyright © 2010 John Wiley & Sons, Ltd.     

Reactivity of the insecticide chlorpyrifos‐methyl toward hydroxyl and perhydroxyl ion. Effect of cyclodextrins

The reactivity of Chlorpyrifos‐Methyl ( 1 ) toward hydroxyl ion and the α‐nucleophile, perhydroxyl ion was investigated in aqueous basic media. The hydrolysis of 1 was studied at 25 °C in water containing 10% ACN or 7% 1,4‐dioxane at NaOH concentrations between 0.01 and 0.6 M ; the second‐order rate constant is 1.88 × 10^?2 M ^?1 s^?1 in 10% ACN and 1.70 × 10^?2 M ^?1 s^?1 in 7% 1,4‐dioxane. The reaction with H₂O₂ was studied in a pH range from 9.14 to 12.40 in 7% 1,4‐dioxane/H₂O; the second‐order rate constant for the reaction of HOO^? ion is 7.9 M ^?1 s^?1 whereas neutral H₂O₂ does not compete as nucleophile. In all cases quantitative formation of 3,5,6‐trichloro‐2‐pyridinol ( 3 ) was observed indicating an S_N2(P) pathway. The hydrolysis reaction is inhibited by α‐, β‐, and γ‐cyclodextrin showing saturation kinetics; the greater inhibition is produced by γ‐cyclodextrin. The reaction with hydrogen peroxide is weakly inhibited by α‐ and β‐cyclodextrin (β‐CD), whereas γ‐cyclodextrin produces a greater inhibition and saturation kinetics. The kinetic data obtained in the presence of β‐ or γ‐cyclodextrin for the reaction with hydroxyl or perhydroxyl ion indicate that the main reaction pathway for the cyclodextrin‐mediated reaction is the reaction of HO^? or HOO^? ion with the substrate complexed with the anion of the cyclodextrin. The inhibition is attributed to the inclusion of the substrate with the reaction center far from the ionized secondary OH groups of the cyclodextrin and protected from external attack of the nucleophile. Sucrose also inhibits the hydrolysis reaction but the effect is independent of its concentration. Copyright © 2008 John Wiley & Sons, Ltd.     

Pulse radiolysis studies of 2‐ and 3‐hydroxybenzyl alcohols: inhibition of dehydration of ·OH‐(hydroxybenzyl alcohols) adducts by H2PO4− ions

Reactions of ·OH/O ^.? radicals and H‐atoms as well as specific oxidants such as Cl₂^.? and N₃· radicals have been studied with 2‐ and 3‐hydroxybenzyl alcohols (2‐ and 3‐HBA) at various pH using pulse radiolysis technique. At pH 6.8, ·OH radicals were found to react quite fast with both the HBAs (k = 7.8 × 10⁹ dm³ mol^?1 s^?1 with 2‐HBA and 2 × 10⁹ dm³ mol^?1 s^?1 with 3‐HBA) mainly by adduct formation and to a minor extent by H‐abstraction from ? CH₂OH groups. ·OH‐(HBA) adduct were found to undergo decay to give phenoxyl type radicals in a pH dependent way and it was also very much dependent on buffer‐ion concentrations. It was seen that ·OH‐(2‐HBA) and ·OH‐(3‐HBA) adducts react with HPO₄^2? ions (k = 2.1 × 10⁷ and 2.8 × 10⁷ dm³ mol^?1 s^?1 at pH 6.8, respectively) giving the phenoxyl type radicals of HBAs. At the same time, this reaction is very much hindered in the presence of H₂PO ions indicating the role of phosphate ion concentration in determining the reaction pathway of ·OH adduct decay to final stable product. In the acidic region adducts were found to react with H⁺ ions. At pH 1, reaction of ·OH radicals with HBAs gave exclusively phenoxyl type radicals. Proportion of the reducing radicals formed by H‐abstraction pathway in ·OH/O ^.? reactions with HBAs was determined following electron transfer to methyl viologen. H‐atom abstraction is the major pathway in O ^.? reaction with HBAs compared to ·OH radical reaction. H‐atom reaction with 2‐ and 3‐HBA gave transient species which were found to transfer electron to methyl viologen quantitatively. Copyright © 2010 John Wiley & Sons, Ltd.     

Nitrosation of dialkylhydroxylamines,and computational and NMR investigations of the interconversion of conformational isomers of N‐nitroso‐dimethylhydroxylamine

The effect of acidity upon the rate of nitrosation of N‐benzyl,O‐methylhydroxylamine ( 3 ) in 1:1 (v/v) H₂O/MeOH at 25 °C has been investigated. The pseudo‐first‐order rate constant (k_obs) for loss of HNO₂ as the limiting reagent decreases as [H₃O⁺] increases. This is compatible with two parallel reaction channels (Scheme 2 ). One involves the direct reaction of the free hydroxylamine with HNO₂ (k₁ = 1.4 × 10² dm³ mol^?1 s^?1, 25 °C) and the other involves the reaction of the free hydroxylamine with NO⁺ (k₂ = 5.9 × 10⁹ dm³ mol^?1 s^?1). In contrast, there is only a very slight increase in k_obs with increasing [H₃O⁺] for nitrosation of N,O‐dimethylhydroxylamine ( 4 ) in dilute aqueous solution at 25 °C to give N‐nitroso‐dimethylhydroxylamine, 5 . This also fits a two‐channel mechanism (Scheme 3 ). Again, one involves the nitrosation of the free base by NO⁺ (k₂ = 8 × 10⁹ dm³ mol^?1 s^?1, 25 °C) but the other channel now involves catalysis by chloride (k₃ = 1.3 × 10⁸ dm³ mol^?1 s^?1). Arising from these results, we propose an estimate of pK_a ～ ?5 for protonated nitrous acid, (O = N? OH), which is appreciably different from the literature value of +1.7. The interconversion of cis and trans conformational isomers of 5 has been investigated by temperature‐dependent NMR spectroscopy in CDCl₃, methanol‐d₄, toluene‐d₈ and dimethyl sulfoxide‐d₆. Enthalpies and entropies of reaction and of activation have been determined and compared with computational values obtained at the B3LYP/6‐31G* level of theory. The cis form is slightly more stable at normal temperatures and no solvent effects upon the thermodynamics or kinetics of the conformational equilibrium were predicted computationally or detected experimentally. In addition, key geometric parameters and dipole moments have been calculated for the cis and trans forms, and for the lowest energy transition structure for their interconversion, in the gas phase and in chloroform. These results indicate electronic delocalisation in the ground states of 5 which is lost in the transition structure for their interconversion. Copyright © 2010 John Wiley & Sons, Ltd.     

Magnetic field effects on the hydrogen abstraction reaction of triplet 4-methoxybenzophenone with thiophenol as studied by a picosecond laser flash photolysis technique

The hydrogen abstraction reaction of triplet 4-methoxybenzophenone with thiophenol at 265 K has been studied with a newly developed picosecond laser flash photolysis apparatus under magnetic fields of 0–1.7 T. The decay rate constant of the radical pair generated was found to increase from 3.42 × 10⁹ s^?1 to 4.15 × 10⁹ s^?1 with increasing the magnetic field from 0 to 1.7 T. The observed magnetic field effects can be explained by the Δg mechanism. Using the simple kinetics model with the Δg mechanism, the rate constant of the escape process from the pair (k _esc) and two rate constants for the T-S spin conversion process (k _T-S) at 0 and 1.7 T were found to be 1.97 × 10⁹ s^?1, 1.45 × 10⁹ s^?1, and 2.12 × 10⁹ s^?1, respectively. From the magnetic field dependence on k _T-S, the difference in the g values of the 4-methoxybenzophenone ketyl and phenylthiyl radicals was estimated to be 0.0087.     

The kinetics and mechanism of the homogeneous,unimolecular gas‐phase elimination of 2‐(4‐substituted‐phenoxy)tetrahydro‐2H‐pyranes

The gas‐phase elimination kinetics of tetrahydropyranyl phenoxy ethers: 2‐phenoxytetrahydro‐2H‐pyran, 2‐(4‐methoxyphenoxy)tetrahydro‐2H‐pyran, and 2‐(4‐tert‐butylphenoxy)tetrahydro‐2H‐pyran were determined in a static system, with the vessels deactivated with allyl bromide, and in the presence of the free radical inhibitor toluene. The working temperature and pressure were 330 to 390°C and 25 to 89 Torr, respectively. The reactions yielded DHP and the corresponding 4‐substituted phenol. The eliminations are homogeneous, unimolecular, and satisfy a first‐order rate law. The Arrhenius equations for decompositions were found as follows:

• 2‐phenoxytetrahydro‐2H‐pyran
• log k₁ (s^?1) = (14.18 ± 0.21) ? (211.6 ± 0.4) kJ mol^?1 (2.303 RT)^?1
• 2‐(4‐methoxyphenoxy)tetrahydro‐2H‐pyran
• log k₁ (s^?1) = (14.11 ± 0.18) ? (203.6 ± 0.3) kJ mol^?1 (2.303 RT)^?1
• 2‐(4‐tert‐butylphenoxy)tetrahydro‐2H‐pyran
• log k₁ (s^?1) = (14.08 ± 0.08) ? (205.9 ± 1.0) kJ mol^?1 (2.303 RT)^?1

The analysis of kinetic and thermodynamic parameters for thermal elimination of 2‐(4‐substituted‐phenoxy)tetrahydro‐2H‐pyranes suggests that the reaction proceeds via 4‐member cyclic transition state. The results obtained confirm a slight increase of rate constant with increasing electron donating ability groups in the phenoxy ring. The pyran hydrogen abstraction by the oxygen of the phenoxy group appears to be the determinant factor in the reaction rate.     

Hidden chemistry in phenoxyl radical (C6H5O•) coupling reaction mechanism revealed

A novel hidden reaction of the phenoxyl radical (C₆H₅O^?) with a specific daughter is found to significantly alter its hitherto accepted coupling reactions' scheme. Transient characterizations and mechanistic evaluations in highly acidic to strongly alkaline aqueous medium reveal this concurrent reaction competing favorably in nanosecond–microsecond time‐scale with the five distinct C₆H₅O^? + C₆H₅O^? reactions, which produce various phenolic end‐products as reported earlier (M. Ye and R. H. Schuler, J. Phys. Chem. 1989, 93, 1898). Presently, only the symmetric 4,4′‐dioxo transient precursor, O?C₆H₅? H₅C₆?O that leads to the stable 4,4′‐biphenol product, gets partially oxidized by a fraction of remaining C₆H₅O^?. The resulting secondary transient ^?C₁₂H₉O₂ radical is generated at diffusion‐controlled rate, k > 5.0 × 10⁹ M^?1 s^?1, and follows an independent chemistry. Consequently, when the previously reported five coupled end product distribution ratios were appropriately updated, the respective fractional values revealed a closer match for the symmetric 2,2′‐ and 4,4′‐biphenols with their suggested coupling reaction branching probabilities based on the atomic spin‐density distributions in the C₆H₅O^? radical (P. Neta, R. W. Fessenden, J. Phys. Chem., 1974, 78, 523). Results also suggest that in the remaining fraction, differential solvation in aqueous medium of various orientation‐related encounter complexes (C₆H₅O…C₆H₅O) formed during coupling favors rearrangement only toward 2,4′‐biphenolic product, at the cost of 2‐ and 4‐phenoxyphenolic species. Copyright © 2009 John Wiley & Sons, Ltd.     

Gas‐phase oxidation of CH2 = C(CH3)CH2Cl initiated by OH radicals and Cl atoms: kinetics and fate of the alcoxy radical formed

Relative kinetics of the reactions of OH radicals and Cl atoms with 3‐chloro‐2‐methyl‐1‐propene has been studied for the first time at 298 K and 1 atm by GC‐FID. Rate coefficients are found to be (in cm³ molecule^?1 s^?1): k₁ (OH + CH₂ = C(CH₃)CH₂Cl) = (3.23 ± 0.35) × 10^?11, k₂ (Cl + CH₂ = C(CH₃)CH₂Cl) = (2.10 ± 0.78) × 10^?10 with uncertainties representing ± 2σ. Product identification under atmospheric conditions was performed by solid phase microextraction/GC‐MS for OH reaction. Chloropropanone was identified as the main degradation product in accordance with the decomposition of the 1,2‐hydroxy alcoxy radical formed. Additionally, reactivity trends and atmospheric implications are discussed. Copyright © 2015 John Wiley & Sons, Ltd.     

Theoretical investigation on photovoltaic properties of PC61BM‐PDPP5T system as a promising polymer‐based solar cell

In the current work, dependent density functional theory and time‐dependent density functional theory calculations coupled with the inherent charge hopping model and some visualization techniques have been used to systematically investigate the photovoltaic properties of PC₆₁BM‐PDPP5T system. Calculations show that PC₆₁BM‐PDPP5T system possesses the relatively large open‐circuit voltage 0.82 V the middle‐sized exciton binding energy (0.690 eV), the small internal reorganization energy (0.159 eV) in the exciton‐dissociation process, but the relatively large one (0.396 eV) in the case of charge‐recombination. With a simplified molecular model, the exciton‐dissociation rate constant, k_dis, is estimated to be as large as 1.156 × 10¹⁰ s^?1 in PC₆₁BM‐PDPP5T phase interface, while the charge‐recombination one, k_rec, is only 1.018 × 10⁷ s^?1 under the same condition, which indicates a rapid and efficient photoinduced exciton‐dissociation process. Copyright © 2016 John Wiley & Sons, Ltd.     

Prediction of ortho substituent effect in alkaline hydrolysis of substituted phenyl benzoates in aqueous acetonitrile

The second‐order rate constants k (dm³mol^?1s^?1) for alkaline hydrolysis of meta‐, para‐ and ortho‐substituted phenyl esters of benzoic acid, C₆H₅CO₂C₆H₄‐X, in aqueous 50.9% (v/v) acetonitrile have been measured spectrophotometrically at 25 °C. In substituted phenyl benzoates, C₆H₅CO₂C₆H₄‐X, the substituent effects log k_X ? log k_H in aqueous 50.9% acetonitrile at 25 °C for para, meta and ortho derivatives showed good correlations with the Taft and Charton equations, respectively. Using the log k values for various media at 25 °C, the variation of the ortho substituent effect with solvent was found to be precisely described with the following equation: Δlog k_ortho = log k_ortho ? log k_H = 1.57σ_I + 0.93σ°_R + 1.08E_s^B ? 0.030ΔEσ_I ? 0.069ΔEσ°_R, where ΔE is the solvent electrophilicity, ΔE = E_S ? E_H20, characterizing the hydrogen‐bond donating power of the solvent. We found that the experimental log k values for ortho‐, para‐ and meta‐substituted phenyl benzoates in aqueous 50.9% acetonitrile at 25 °C, determined in the present work, precisely coincided with the log k values predicted with the equation (log k^X)_calc = (log k^H_AN)_exp + (Δlog k^X)_calc where the substituent effect (Δlog k^X)_calc was calculated from equation describing the variation of the substituent effect with the solvent electrophilicity parameter, using for aqueous 50.9% CH₃CN the solvent electrophilicity parameter, ΔE = ?5.84. In going from water to aqueous 50.9% CH₃CN, the ortho inductive term grows twice less as compared with the para polar effect. Copyright © 2013 John Wiley & Sons, Ltd.     

Energy Transfer Studies with Perylene bis-Diimide Derivatives

Abstract

Singlet energy transfer between seven derivatives of perylene diimides and cobalt ions are studied. Energy transfer quenching by cobalt ions is observed for all of the perylene diimides. The rate of bimolecular quenching is found to be about, k_q ? 10¹⁰ M^?1s^?1, only the N-naphthyl substitution lowered the rates to the range of, k_q ? 10⁹ M^?1s^?1. The critical transfer distances, R_o (5.8–10.4 A°), calculated from donor emission and acceptor absorption spectra, are attributed to a Forster resonance energy transfer process.     

Effects of linking chain length and magnetic field on the kinetics of photoprocesses in covalently bonded porphyrin—viologen dyads

The formation and decay kinetics of chain linked triplet radical pairs derived from photo-induced electron transfer reactions in a series of 21 zinc porphyrin-flexible spacer-viologen (ZnP-Sp _n -Vi²⁺) dyads containing 2–138 atoms (n) in the spacer, have been examined by nanosecond laser flash photolysis techniques in an external magnetic field. In non-viscous polar solvents (acetone and CHCl₃ plus CH₃OH = 1:1 v/v), the effect of the spacer length on the rate constant of forward electron transfer can be described by the equation: k _et = k ⁰ _et(n + 6)^?1.5, with k ⁰ _et = 3 × 10¹⁰ s^?1 and 1.2 × 10¹⁰ s^?1 for electron transfer from the singlet and triplet states of ZnP, respectively. In zero magnetic field, the value of the triplet radical pair recombination rate constant, k _r(0) = 0.7 × 10⁶-8 × 10⁶ s^?1, is significantly smaller than k _et. The dependence of k _r(0) on n has an extremum with the maximum near n = 20. In a strong magnetic field (B = 0.21 T), significant retardation of triplet radical pair recombination is observed. In strong magnetic fields the effect of the chain length on triplet radical pair recombination rates is rather small and k _r(B) may vary in the range 0.3 × 10⁶-1 × 10⁷ s^?1. The phenomena observed are discussed in terms of the interplay of molecular and spin dynamics in the limits of slow and fast encounters, taking into account the exchange-interaction.     

Kinetics and mechanism of the reactions of O‐aryl S‐(4‐nitrophenyl) dithiocarbonates with anilines in aqueous ethanol

The reactions of O‐(4‐methylphenyl) S‐(4‐nitrophenyl) dithiocarbonate and O‐(4‐chlorophenyl) S‐(4‐nitrophenyl) dithiocarbonate with a series of anilines are subjected to a kinetic investigation in 44 wt% ethanol–water, at 25.0 °C and an ionic strength of 0.2 M. The reactions are followed spectrophotometrically at 420 nm (appearance of 4‐nitrobenzenethiolate anion). Under excess amine, pseudo‐first‐order rate coefficients (k_obs) are found. For the reactions of both substrates with anilines, plots of k_obs versus free amine concentration at constant pH are nonlinear upwards, according to a second‐order polynomial equation. This kinetic behavior is in agreement with a stepwise mechanism consisting of two tetrahedral intermediates, one zwitterionic (T^±) and the other anionic (T^?), with a kinetically significant proton transfer from T^± to an aniline to yield T^?. The rate equation was derived from the proposed mechanism. By nonlinear least‐squares fitting of the rate equation to the experimental data, values of the rate micro‐coefficients involved in both steps were determined. Copyright © 2009 John Wiley & Sons, Ltd.     

Gas‐phase reactions of Cl atoms with hydrochloroethers: relative rate constants and their correlation with substituents' electronegativities

Rate constants for the reactions of Cl atoms with CH₃OCHCl₂ and CH₃OCH₂CH₂Cl were determined at (296 ± 2) K and atmospheric pressure using synthetic air as bath gas. Decay rates of these organic compounds were measured relative to the following reference compounds: CH₂ClCH₂Cl and n‐C₅H₁₂. Using rate constants of 1.33 × 10^?12 and 2.52 × 10^?10 cm³ molecule^?1 sec^?1 for the reaction of Cl atoms with CH₂ClCH₂Cl and n‐C₅H₁₂, respectively, the following rate coefficients were derived: k(Cl + CH₃OCHCl₂) = (1.05 ± 0.11) × 10^?12 and k(Cl + CH₃OCH₂CH₂Cl) = (1.14 ± 0.10) × 10^?10, in units of cm³ molecule^?1 s^?1. The rate constants obtained were compared with previous literature data and a correlation was found between the rate coefficients of some CH₃OCHR¹R² + Cl reactions and ΔElectronegativity of ? CHR¹R². Copyright © 2008 John Wiley & Sons, Ltd.     

The equilibrium and kinetics of intermolecular hydrogen bonding in nitroarene anion radical–alcohol system: 1,3‐dinitro‐benzene anion radical – R–OH (R═CH3–, C2H5–, (CH3)2 CH–)

To explore the possibility of hydrogen bonding of a stable anion radical with DNA – component sugar, hormones, steroid, and so on (through hydroxyl group), as a first step, the possibility of hydrogen bonding of 1,3‐dinitrobenzene anion radical (1,3‐DNB^??) with aliphatic alcohols was studied. It was found that 1,3‐DNB^?? anion radical undergoes hydrogen bonding with alcohols: methanol, ethanol, and 2‐proponal. The hydrogen‐bonding equilibrium constant K_eq and the (hydrogen‐bonding) rate constants k₂ were evaluated through the use of linear scan and cyclic voltammetry theory and techniques. The K_eq was found to be in the range of 1.4–6.0 m ^?1, whereas the rate constants k₂ were found to be in the range of 1.5–3.6 m ^?1 s^?1, depending upon the hydrogen‐bonding agent and the equation used for the calculation of the rate constants. The hydrogen‐bonding number n was found to be around 0.5 or 1.0. The implication of this study in, for example, the replication of DNA, the prevention of the formation of super oxide, and so on is discussed. Copyright © 2012 John Wiley & Sons, Ltd.