Water‐Exchange Mechanism for Zinc(II), Cadmium(II), and Mercury(II) Ions in Water as Studied by Umbrella‐Sampling Molecular‐Dynamics Simulations

Umbrella‐sampling molecular‐dynamics simulations were performed to investigate the water‐exchange reactions of zinc(II), cadmium(II), and mercury(II) ions in aqueous solution. The dissociation of a coordinating water molecule to the M? O distance at 3.34, 3.16, and 3.26 Å for Zn^II, Cd^II, and Hg^II, respectively, leads the system to a transition state. For Zn^II, the first hydration shell is occupied by five spectator water molecules in the transition state, indicating that the water‐exchange reaction proceeds via a dissociative mode of activation. In contrast, the number of spectator water molecules of 5.85 and 5.95 for Cd^II and Hg^II, respectively, suggests an associative exchange for these larger metal ions. The average M? O distance of the spectator molecules is shortened by 0.06 Å for the dissociative exchange of Zn^II, while it is elongated by 0.04 and 0.03 Å for Cd^II and Hg^II, respectively. The water‐exchange rate constants of 4.1×10⁸, 6.8×10⁸, and 1.8×10⁹ s^?1 are estimated for Zn^II, Cd^II, and Hg^II, respectively, at 298 K in terms of the transition‐state theory based on the assumption of a transmission coefficient of unity.     

Formation of a Thymine‐HgII‐Thymine Metal‐Mediated DNA Base Pair: Proposal and Theoretical Calculation of the Reaction Pathway

A reaction mechanism that describes the substitution of two imino protons in a thymine:thymine (T:T) mismatched DNA base pair with a Hg^II ion, which results in the formation of a (T)N3‐Hg^II‐N3(T) metal‐mediated base pair was proposed and calculated. The mechanism assumes two key steps: The formation of the first Hg^II? N3(T) bond is triggered by deprotonation of the imino N3 atom in thymine with a hydroxo ligand on the Hg^II ion. The formation of the second Hg^II? N3(T) bond proceeds through water‐assisted tautomerization of the remaining, metal‐nonbonded thymine base or through thymine deprotonation with a hydroxo ligand of the Hg^II ion already coordinated to the thymine base. The thermodynamic parameters ΔG_R=?9.5 kcal mol^?1, ΔH_R=?4.7 kcal mol^?1, and ΔS_R=16.0 cal mol^?1 K^?1 calculated with the ONIOM (B3LYP:BP86) method for the reaction agreed well with the isothermal titration calorimetric (ITC) measurements by Torigoe et al. [H. Torigoe, A. Ono, T. Kozasa, Chem. Eur. J. 2010 , 16, 13218–13225]. The peculiar positive reaction entropy measured previously was due to both dehydration of the metal and the change in chemical bonding. The mercury reactant in the theoretical model contained one hydroxo ligand in accord with the experimental pK_a value of 3.6 known for an aqua ligand of a Hg^II center. The chemical modification of T:T mismatched to the T‐Hg^II‐T metal‐mediated base pair was modeled for the middle base pair within a trinucleotide B‐DNA duplex, which ensured complete dehydration of the Hg^II ion during the reaction.     

Photodissociation Mechanisms of Major Mercury(II) Species in the Atmospheric Chemical Cycle of Mercury

Mercury is a contaminant of global concern that is transported throughout the atmosphere as elemental mercury Hg⁰ and its oxidized forms Hg^I and Hg^II. The efficient gas‐phase photolysis of Hg^II and Hg^I has recently been reported. However, whether the photolysis of Hg^II leads to other stable Hg^II species, to Hg^I, or to Hg⁰ and its competition with thermal reactivity remain unknown. Herein, we show that all oxidized forms of mercury rapidly revert directly and indirectly to Hg⁰ by photolysis. Results are based on non‐adiabatic dynamics simulations, in which the photoproduct ratios were determined with maximum errors of 3%. We construct for the first time a complete quantitative mechanism of the photochemical and thermal conversion between atmospheric Hg^II, Hg^I, and Hg⁰ compounds. These results reveal new fundamental chemistry that has broad implications for the global atmospheric Hg cycle. Thus, photoreduction clearly competes with thermal oxidation, with Hg⁰ being the main photoproduct of Hg^II photolysis in the atmosphere, which significantly increases the lifetime of this metal in the environment.     

A Novel DNA Helical Wire Containing HgII‐Mediated T:T and T:G Pairs

Numerous applications of metal‐mediated base pairs (metallo‐base‐pairs) to nucleic acid based nanodevices and genetic code expansion have been extensively studied. Many of these metallo‐base‐pairs are formed in DNA and RNA duplexes containing Watson–Crick base pairs. Recently, a crystal structure of a metal–DNA nanowire with an uninterrupted one‐dimensional silver array was reported. We now report the crystal structure of a novel DNA helical wire containing Hg^II‐mediated T:T and T:G base pairs and water‐mediated C:C base pairs. The Hg‐DNA wire does not contain any Watson–Crick base pairs. Crystals of the Hg‐DNA wire, which is the first DNA wire structure driven by Hg^II ions, were obtained by mixing the short oligonucleotide d(TTTGC) and Hg^II ions. This study demonstrates the potential of metallo‐DNA to form various structural components that can be used for functional nanodevices.     

Crystal Structure of Metallo DNA Duplex Containing Consecutive Watson–Crick‐like T–HgII–T Base Pairs

The metallo DNA duplex containing mercury‐mediated T–T base pairs is an attractive biomacromolecular nanomaterial which can be applied to nanodevices such as ion sensors. Reported herein is the first crystal structure of a B‐form DNA duplex containing two consecutive T–Hg^II–T base pairs. The Hg^II ion occupies the center between two T residues. The N3‐Hg^II bond distance is 2.0 Å. The relatively short Hg^II‐Hg^II distance (3.3 Å) observed in consecutive T–Hg^II–T base pairs suggests that the metallophilic attraction could exist between them and may stabilize the B‐form double helix. To support this, the DNA duplex is largely distorted and adopts an unusual nonhelical conformation in the absence of Hg^II. The structure of the metallo DNA duplex itself and the Hg^II‐induced structural switching from the nonhelical form to the B‐form provide the basis for structure‐based design of metal‐conjugated nucleic acid nanomaterials.     

Unidimensional Self‐assembling of {HgII[NNN(PhBr)2]2} through Metal‐η4‐arene π‐Interactions: Synthesis and X‐Ray Characterization of a Bis Diaryl Symmetric‐substituted Triazenide Complex Polymer of Mercury(II)

A solution of deprotonated 1,3‐bis(4‐bromophenyl)triazene reacts with Hg(CH₃COO)₂ in methanol / tetrahydrofurane to give yellow crystalline needles of {Hg^II[NNN(PhBr)₂]₂}_n, a triazenide complex polymer of Hg^II with metal‐η²,η²‐arene π‐interactions, performed by coordinated single triazenide chains. The crystal structure of the new polymeric complex of Hg^II belongs to the monoclinic space group P2₁/n. The lattice of [Hg^II(BrPhNNNPhBr)₂]_n can be viewed as a one‐dimensional assembling of planar tectons [Hg^II(BrPhNNNPhBr)₂] linked through metalocene alike Hg^II‐η²,η²‐arene π‐interactions along the crystallographic b axis.     

活性炭孔隙结构对催化氧化脱除单质汞的影响

研究活性炭在硫化氢存在条件下催化氧化脱除煤气中单质汞的吸附机理和探讨提高其吸附能力的方法,在模拟煤气气氛下对3种活性炭和一种活性焦进行汞的吸附性能实验,并进一步分析活性炭(焦)的孔隙结构。用BET方程处理N₂等温吸附数据,计算比表面积;用HK法进行微孔分析;用BJH法计算中孔孔径分布。结果表明,硫化氢被催化氧化后,生成吸附在活性炭孔壁上的活性硫促进了对汞的吸附;随着活性炭微孔和中孔体积的增大,活性炭对汞的吸附能力得到提高。     

An Extremely Stable Interprotein Tetrahedral Hg(Cys)4 Core Forms in the Zinc Hook Domain of Rad50 Protein at Physiological pH

In nature, thiolate-based systems are the primary targets of divalent mercury (Hg^II) toxicity. The formation of Hg(Cys)_x cores in catalytic and structural protein centers mediates mercury's toxic effects and ultimately leads to cellular damage. Multiple studies have revealed distinct Hg^II-thiolate coordination preferences, among which linear Hg^II complexes are the most commonly observed in solution at physiological pH. Trigonal or tetrahedral geometries are formed at basic pH or in tight intraprotein Cys-rich metal sites. So far, no interprotein tetrahedral Hg^II complex formed at neutral pH has been reported. Rad50 protein is a part of the multiprotein MRN complex, a major player in DNA damage-repair processes. Its central region consists of a conserved CXXC motif that enables dimerization of two Rad50 molecules by coordinating Zn^II. Dimerized motifs form a unique interprotein zinc hook domain (Hk) that is critical for the biological activity of the MRN. Using a series of length-differentiated peptide models of the Pyrococcus furiosus zinc hook domain, we investigated its interaction with Hg^II. Using UV-Vis, CD, PAC, and ¹⁹⁹Hg NMR spectroscopies as well as anisotropy decay, we discovered that all Rad50 fragments preferentially form homodimeric Hg(Hk)₂ species with a distorted tetrahedral HgS₄ coordination environment at physiological pH; this is the first example of an interprotein mercury site displaying tetrahedral geometry in solution. At higher Hg^II content, monomeric HgHk complexes with linear geometry are formed. The Hg(Cys)₄ core of Rad50 is extremely stable and does not compete with cyanides, NAC, or DTT. Applying ITC, we found that the stability constant of the Rad50 Hg(Hk)₂ complex is approximately three orders of magnitude higher than those of the strongest Hg^II complexes known to date.     

15-Hydroxybenzomonothia-15-crown-5 with the sulfur atom linked with the benzene ring and the derived sulfoxide: synthesis,structure, and complexation with the metal cations

Novel 15-hydroxybenzomonothia-15-crown-5 containing the sulfur atom linked with the benzene ring and its S-oxide were synthesized. The stability constants for the complexes of the obtained benzocrown ethers and a reference 15-hydroxybenzo-15-crown-5 with Na, Ca, Ag^I, Cd, Hg^II, and Pb^II perchlorates were determined by ¹H NMR titration. In MeCN-d₃, the benzothiacrown ether demonstrates a high selectivity towards the thio- and oxothiophilic Hg²⁺ (logK ₁ = 7.1) and Pb²⁺ ions (logK ₁ = 7.4). In MeCN-d₃-D₂O mixtures, the stabilities of the most of complexes decrease sharply due to competitive hydration of the metal cations except for the “soft” Ag⁺ and Hg²⁺ ions having low affinity for the “hard” oxygen atoms and, on the contrary, very high affinity for the “soft” S^II atoms. This results in the change in selectivity of complexation: at the water content in solution of 20%, the benzothiacrown ether binds preferably the Hg²⁺ (logK ₁ = 5.0) and Ag⁺ ions (logK ₁ = 2.7). In MeCN-d₃, the benzothiacrown-derived sulfoxide is a weak and non-selective complexing agent towards all the metal cations under study; the reference 15-hydroxybenzo-15-crown-5 forms more stable complexes with the oxophilic sodium, calcium, and lead(ii) cations. The conformational features of the benzocrown ethers and their metal complexes established by NMR spectroscopy and X-ray diffraction are discussed. The found characteristics of the complexing ability of benzomonothia-15-crown-5 where the sulfur atom is in conjugation with the benzene ring reveal that the macrocyclic ligands with such a structure are promising as high-selective and efficient complexing agents for the “soft” mercury(ii) and silver(i) cations in acetonitrile-water mixtures.     

Bis{[μ‐N,N′‐bis­(salicyl­idene)‐1,4‐butane­di­amine‐N,N′,O,O′‐copper(II)]‐μ‐chloro‐chloromercury(II)}

A new tetranuclear Cu^II–Hg^II–Hg^II–Cu^II complex, [Cu₂Hg₂Cl₄(C₁₈H₁₈N₂O₂)₂], has been prepared by means of a copper complex found in the literature. The molecular structure of this complex was determined by X‐ray diffraction and the Cu–Hg–Hg–Cu chain was seen to be non‐linear. The change in magnetic susceptibility with temperature was recorded for this complex and observed to abide by the Curie–Weiss law. The coordination around the Hg^II ions is square pyramidal. The Cu?Hg bridging distance is 3.5269 (7) Å.     

A click fluorophore sensor that can distinguish Cu(II) and Hg(II) via selective anion-induced demetallation

A cyclam‐based fluorescent sensor featuring a novel triazole pendant arm has been synthesised using click chemistry. The sensor is highly responsive to both Cu^II and Hg^II in neutral aqueous solution and displays excellent selectivity in the presence of various competing metal ions in 50‐fold excess. The addition of specific anions such as I^? and S₂O₃^2? causes a complete revival of fluorescence only in the case of Hg^II, providing a simple and effective method for distinguishing solutions containing Cu^II, Hg^II or a mixture of both ions, even in doped seawater samples. X‐ray crystal structures of both the Hg^II sensor complex and a model Cu^II complex show that pendant triazole coordination occurs through the central nitrogen atom (N2), providing to the best of our knowledge the first reported examples of this unusual coordination mode in macrocycles. Fluorescence, mass spectrometry and ¹H NMR experiments reveal that the mechanism of anion‐induced fluorescence revival involves either displacement of pendant coordination or complete removal of the Hg^II from the macrocycle, depending on the anion.     

A highly selective and sensitive fluorescein-based chemodosimeter for Hg2+ ions in aqueous media

A new fluorescein-based chemodosimeter (II) for Hg²⁺ ion was designed and synthesized, and it displayed excellent selective and sensitive toward Hg²⁺ ion over other commonly metal ions in aqueous media. II was a colorless, non-fluorescent compound. Upon addition of Hg²⁺ to the solution of II, the thiosemicarbazide moiety of II would undergo an irreversible desulfurization reaction to form its corresponding oxadiazole (IV), a colorful and fluorescent product. During this process, the spirocyclic ring of II was opened, causing instantaneous development of visible color and strong fluorescence emission in the range of 500-600 nm. Based on the above mechanism, a fluorogenic Hg²⁺-selective chemodosimeter was developed. The fluorescence increase is linearly with Hg²⁺ concentration up to 1.0 μmol L⁻¹ with a detection limit of 8.5 × 10⁻¹⁰ mol L⁻¹ (3σ). Compared with the rhodamine-type chemodosimeter, II is more stable in aqueous media and exhibits higher sensitivity toward Hg²⁺. The findings suggest that II will serve as a practical chemodosimeter for rapid detection of Hg²⁺ concentrations in realistic media.     

Dual recognition strategy for ultra-sensitive fluorescent detection of Hg2+ at femto-molar level based on aptamer functionalized sulfur quantum dots

In the present study, a dual recognition strategy for ultrasensitive detection of Hg²⁺ was successfully developed for the first time based on aptamer functionalized sulfur quantum dots (Apt-SQDs). The developed Apt-SQDs not only retained the good fluorescence properties of quantum dots but also overcame the problem of poor selectivity of SQDs for heavy metal ions. This system used the dual recognition strategy, including the combination of S_x^2? and Hg²⁺ and T-Hg²⁺-T structures to excellently identify and capture Hg²⁺, and an ultrahigh sensitivity fluorescent aptasensor was fabricated. The fluorescent aptasensor had a good response to Hg²⁺ at concentrations ranging of 10^?15 to 10^?7 M with an ultralow limit of detection of 0.3 fM, and the response to other metal ions was far less than that to Hg²⁺. It was successfully applied to detect Hg²⁺ in nearby environmental water samples (tap water, lake water and river water) with a good recovery rate. Moreover, portable test papers that would be useful for Hg²⁺ monitoring in environmental water were designed. The dual recognition strategy not only achieves ultrasensitive fluorescent detection of Hg²⁺ but also provides a new insight into the further expansion of the application of SQDs.     

Mercury(II) Binding to Metallothionein in Mytilus edulis revealed by High Energy-Resolution XANES Spectroscopy

Of all divalent metals, mercury (Hg^II) has the highest affinity for metallothioneins. Hg^II is considered to be enclosed in the α and β domains as tetrahedral α-type Hg₄Cys_11-12 and β-type Hg₃Cys₉ clusters similar to Cd^II and Zn^II. However, neither the four-fold coordination of Hg nor the existence of Hg–Hg atomic pairs have ever been demonstrated, and the Hg^II partitioning among the two protein domains is unknown. Using high energy-resolution XANES spectroscopy, MP2 geometry optimization, and biochemical analysis, evidence for the coexistence of two-coordinate Hg-thiolate complex and four-coordinate Hg-thiolate cluster with a metacinnabar-type (β-HgS) structure in the α domain of separate metallothionein molecules from blue mussel under in vivo exposure is provided. The findings suggest that the CXXC claw setting of thiolate donors, which only exists in the α domain, acts as a nucleation center for the polynuclear complex and that the five CXC motifs from this domain serve as the cluster-forming motifs. Oligomerization is driven by metallophilic Hg⋅⋅⋅Hg interactions. Our results provide clues as to why Hg has higher affinity for the α than the β domain. More generally, this work provides a foundation for understanding how metallothioneins mediate mercury detoxification in the cell under in vivo conditions.     

3‐(Pyridin‐4‐yl)acetylacetone: CdII and HgII compete for nitrogen coordination

3‐(Pyridin‐4‐yl)acetylacetone (HacacPy) acts as a pyridine‐type ligand towards Cd^II and Hg^II halides. With CdBr₂, the one‐dimensional polymer [Cd(μ‐Br)₂(HacacPy)Cd(μ‐Br)₂(HacacPy)₂]_∞ is obtained in which five‐ and six‐coordinated Cd^II cations alternate in the chain direction. Reaction of HacacPy with HgBr₂ results in [Hg(μ‐Br)Br(HacacPy)]_∞, a polymer in which each Hg^II centre is tetracoordinated. In both compounds, each metal(II) cation is N‐coordinated by at least one HacacPy ligand. Equimolar reaction between these Cd^II and Hg^II derivatives, either conducted in ethanol as solvent or via grinding in the solid state, leads to ligand redistribution and the formation of the well‐ordered bimetallic polymer catena‐poly[[bromidomercury(II)]‐μ‐bromido‐[aquabis[4‐hydroxy‐3‐(pyridin‐4‐yl)pent‐3‐en‐2‐one]cadmium(II)]‐di‐μ‐bromido], [CdHgBr₄(C₁₀H₁₁NO₂)₂(H₂O)]_n or [{HgBr}(μ‐Br){(HacacPy)₂Cd(H₂O)}(μ‐Br)₂]_∞. Hg^II and Cd^II cations alternate in the [100] direction. The HacacPy ligands do not bind to the Hg^II cations, which are tetracoordinated by three bridging and one terminal bromide ligand. The Cd^II centres adopt an only slightly distorted octahedral coordination. Three bromide ligands link them in a (2 + 1) pattern to neighbouring Hg^II atoms; two HacacPy ligands in a cis configuration, acting as N‐atom donors, and a terminal aqua ligand complete the coordination sphere. Classical O—H…Br hydrogen bonds stabilize the polymeric chain. O—H…O hydrogen bonds between aqua H atoms and the uncoordinated carbonyl group of an HacacPy ligand in a neighbouring strand in the c direction link the chains into layers in the (010) plane.     

Metal chelates of thiazole-2-ylthiourea

Summary The formation constants of 1-phenyl-3-thiazole-2-ylthiourea complexes with some bivalent metal ions (Cu^II, Ni^II, Zn^II and Mn^II) have been determined in 75% EtOH–H₂O. Complexes of Cu^II, Ni^II, Zn^II, Hg^II and Pd^II have been isolated and characterized by conductance, i.r., electronic spectra and magnetic measurements. The ligand forms ML complexes with Cu^II and Hg^II and ML₂ with Ni^II, Zn^II and Pd^II, where L is the uninegatively charged bidentate ligand and binds through the ring nitrogen and thiocarbonyl sulphur atoms.     

Crystal Structure of the Mixed‐Valent Basic Mercury Nitrate HgI2(NO3)2·HgII(OH)(NO3)·HgII(NO3)2·4HgIIO [= Hg8O4(OH)(NO3)5]

Light‐yellow single crystals of the mixed‐valent mercury‐rich basic nitrate Hg₈O₄(OH)(NO₃)₅ were obtained as a by‐product at 85 °C from a melt consisting of stoichiometric amounts of (Hg^I₂)(NO₃)₂·2H₂O and Hg^II(OH)(NO₃). The title compound, represented by the more detailed formula Hg^I₂(NO₃)₂·Hg^II(OH)(NO₃)·Hg^II(NO₃)₂·4Hg^IIO, exhibits a new structure type (monoclinic, C2/c, Z = 4, a = 6.7708(7), b = 11.6692(11), c = 24.492(2) Å, β = 96.851(2)°, 2920 structure factors, 178 parameters, R1[F² > 2σ(F²)] = 0.0316) and is made up of almost linear [O‐Hg^II‐O] and [O‐Hg^I‐Hg^I‐O] building blocks with typical Hg^II‐O distances around 2.06Å and a Hg^I‐O distance of 2.13Å. The Hg₂²⁺ dumbbell exhibits a characteristic Hg‐Hg distance of 2.5079(7) Å. The different types of mercury‐oxygen units form a complex three‐dimensional network exhibiting large cavities which are occupied by the nitrate groups. The NO₃^? anions show only weak interactions between the nitrate oxygen atoms and the mercury atoms which are at distances > 2.6Å from one another. One of the three crystallographically independent nitrate groups is disordered.     

Probing the Coordination Environment of the Human Copper Chaperone HAH1: Characterization of HgII‐Bridged Homodimeric Species in Solution

Although metal ion homeostasis in cells is often mediated through metallochaperones, there are opportunities for toxic metals to be sequestered through the existing transport apparatus. Proper trafficking of Cu^I in human cells is partially achieved through complexation by HAH1, the human metallochaperone responsible for copper delivery to the Wilson and Menkes ATPase located in the trans‐Golgi apparatus. In addition to binding copper, HAH1 strongly complexes Hg^II, with the X‐ray structure of this complex previously described. It is important to clarify the solution behavior of these systems and, therefore, the binding of Hg^II to HAH1 was probed over the pH range 7.5 to 9.4 using ¹⁹⁹Hg NMR, ^199mHg PAC and UV–visible spectroscopies. The metal‐dependent protein association over this pH range was examined using analytical gel‐filtration. It can be concluded that at pH 7.5, Hg^II is bound to a monomeric HAH1 as a two coordinate, linear complex (HgS₂), like the Hg^II–Atx1 X‐ray structure (PDB ID: 1CC8). At pH 9.4, Hg^II promotes HAH1 association, leading to formation of HgS₃ and HgS₄ complexes, which are in exchange on the μs–ns time scale. Thus, structures that may represent central intermediates in the process of metal ion transfer, as well as their exchange kinetics have been characterized.     

Synthesis and properties of 7-formyl-8-hydroxyquinoline and its transition metal complexes

Summary Co^II, Ni^II, Cu^II, Cd^II and Hg^II complexes of 7-formyl-8-hydroxyquinoline (HFHQ) have been prepared, and characterized by elemental analysis, molar conductivities, electronic and i.r. spectra, and magnetic measurements. It was found that the ligand acts as a neutral monodentate or a monobasic bidentate donor. The Co^II, Ni^II and Cu^II complexes possess, respectively, tetrahedral, octahedral and square-planar structures based on their magnetic and electronic spectral data. The electrical conductivities of HFHQ and its metal complexes were measured at different temperatures and their activation energies were calculated. The values obtained for the Co^II, Ni^II, Cd^II and Hg^II complexes agree fairly well with those reported for semiconductors. The ligand was tested as a corrosion inhibitor for aluminium; the limiting concentration of HFHQ to give maximum efficiency (99.2%) is 10^–3 mole dm^–3 at 22°C. The metal-ligand ratios and apparent formation constants for the species generated in ethanol solution were determined spectrophotometrically.