Structures of glycine, enantiopure alanine, and racemic alanine adlayers on Cu(110) and Cu(100) surfaces

We have determined the structures of dense adlayers of glycine and alanine on the Cu(110) and Cu(100) surfaces using plane wave density functional theory. These calculations resolve several experimental controversies regarding these structures. Glycine exists on Cu(110) as a single adlayer structure, while on Cu(100) two distinct glycine adlayers coexist. The glycine structures serve as useful starting points for constructing alanine adlayer structures. We considered separately the adsorption of enantiopure alanine and racemic alanine on each surface. Adlayers of enantiopure alanine are found to be closely related to the adlayers observed for glycine. Racemic alanine adlayers on Cu(110) are structurally analogous to those observed for glycine on this surface and adopt a pseudo-racemate ordering. On Cu(100), in contrast to glycine, racemic alanine is found to adopt a single adlayer structure that is an ordered racemate. Spontaneous segregation of molecular enantiomers does not occur in racemic adsorbed mixtures on either surface. Consideration of the orientationally distinct domains that may exist for each adlayer on these surfaces provides important information for the interpretation of the adlayer domain boundaries that are commonly observed in scanning tunneling microscopy images of amino acid adlayers. Examining this set of amino acid adlayers provides useful insight into the range of subtle behaviors that can arise in these and related systems where chiral molecules form ordered adlayers on flat metal surfaces.     

Characterization of mo deposited on a TiO2(110) surface by scanning tunneling microscopy and Auger electron spectroscopy

The properties of Mo ultrathin films deposited on a TiO2(110) surface were investigated by scanning tunneling microscopy (STM) and spectroscopy (STS), as well as by Auger electron spectroscopy (AES). The substrate exhibited mainly large (1 x 1) terraces decorated by additional [001] rows (missing or added 1D structures) of reduced TiO(x) phases. Only a few percent of the surface exhibited a cross-linked (1 x 2) arrangement. The deposition of Mo layers at room temperature with a rate of approximately 0.4 monolayer/ min resulted in nanoclusters of 1-2 nm with a low-profile shape (2D-like). Preferential decoration of the atomic steps was not found; at the same time, the 1D defect sites of missing or added rows on the (110) terraces were characteristically decorated by larger Mo nanocrystallites. This behavior indicates that the mobility of Mo atoms is higher on the more reduced regions of the substrate. The high dispersion of the Mo adlayer changed only slightly on annealing up to 700 K; in the range of 900-1050 K, however, a significant increase of the particle size accompanied by splitting of the TiO2(110) terraces was observed. This behavior may be explained by the partial oxidation of the supported Mo (accompanied by the reduction of the substrate) into tetragonal crystallites oriented and slightly elongated in the [001] or [110] direction of the TiO2(110) support. STS measurements indicated that the crystallites or the support/crystallite interface formed above 900 K possesses a wide band gap. The annealing above 1050 K resulted in the disappearance of Mo from the TiO2(110) surface, which may be explained by the formation and sublimation of MoO3 species at the perimeter of the nanoparticles. The change of AES signal intensities for O(KLL) and Mo(MNN) as a function of the annealing temperature also supports this mechanism.     

Self-assembly of semifluorinated n-alkanethiols on {111}-oriented Au investigated with scanning tunneling microscopy experiment and theory

The adsorption of semifluorinated alkanethiols on Au/mica was studied by scanning tunneling microscopy (STM). The adlayer structure produced is based on a p(2 x 2) structure though lines of molecules displayed extensive kinks and bends. In addition, a considerable variation in the contrast of molecular features is found. Molecular modeling calculations confirm that, for the fluorinated thiols, inequivalently adsorbed molecules within a p(2 x 2) registry are present, an aspect that endows the local structure of the adlayer with a higher flexibility in comparison to nonfluorinated thiols, where one adsorption site is strongly favored in a (radical 3 x radical 3) R30 degrees structure. Simulated STM imaging on the optimized systems successfully recovered the effects on the molecular feature contrast induced by the flexibility of the fluorinated thiol adlayer.     

The reactive chemisorption of alkyl iodides at Cu(110) and Ag(111) surfaces: a combined STM and XPS study

The chemisorption of methyl and phenyl iodide has been studied at Cu(110) and Ag(111) surfaces at 290 K with STM and XPS. At both surfaces dissociative adsorption of both molecules leads to chemisorbed iodine, with the STM showing c(2 x 2) and (square root 3 x square root 3)R30 structures at the Cu(110) and Ag(111) surfaces, respectively. At the Cu(110) surface a comparison of coexisting c(2 x 2) I(a) and p(2 x 1) O(a) domains shows the iodine adatoms to be chemisorbed in hollow sites with evidence at low coverage for diffusion in the (110) direction. In the case of methyl iodide no carbon adsorption is observed at either the silver or the copper surfaces, but chemisorbed phenyl groups are imaged at the Cu(110) surface after exposure to phenyl iodide. The STM images show the phenyl groups as bright features approximately 0.7 nm in diameter and 0.11 nm above the iodine adlayer, reaching a maximum surface concentration after approximately 6 Langmuir exposure. However, the phenyl coverage decreases with subsequent exposures to PhI and is negligible by approximately 1000 L exposure, consistent with the formation and desorption of biphenyl. The adsorbed phenyls are located above hollow sites in the substrate, they are stabilized at the top and bottom of step edges and in paired chains (1.1 nm apart) on the terraces with a regular interphenyl spacing within the chains of 1.0 nm in the (110) direction. The interphenyl ring spacing and diffusion of individual phenyls from within the chains shows that the chains do not consist of biphenyl species but may be a precursor to their formation. Although the XPS data shows carbon present at the Ag(111) surface after exposure to PhI, no features attributable to phenyl groups were observed by STM.     

Adsorption and coordination of tartaric acid enantiomers on Cu(111) in aqueous solution

Chiral modifiers have gained much attention because they can induce high enantioselectivity on reactive metal surface in heterogeneous enantioselective catalysis. The high enantioselectivity is attributed to that the chirality of modifiers is bestowed onto the metal surface upon adsorption. Much study on the adsorption of modifiers on metal surface has been performed in an ultrahigh vacuum. In this paper, the adsorption of tartaric acid on Cu(111) has been studied by electrochemical scanning tunneling microscopy (STM) in aqueous solution. It is found that (R,R)-tartaric acid and (S,S)-tartaric acid can form a well-ordered adlayer on the Cu(111) surface with a (4 x 4) symmetry. A dimeric structure is proposed in the temporary model from STM observation.     

NC-AFM observation of atomic scale structure of rutile-type TiO2(110) surface prepared by wet chemical process

We succeeded in observing the atomic scale structure of a rutile-type TiO2(110) single-crystal surface prepared by the wet chemical method of chemical etching in an acid solution and surface annealing in air. Ultrahigh vacuum noncontact atomic force microscopy (UHV-NC-AFM) was used for observing the atomic scale structures of the surface. The UHV-NC-AFM measurements at 450 K, which is above a desorption temperature of molecularly adsorbed water on the TiO2(110) surface, enabled us to observe the atomic scale structure of the TiO2(110) surface prepared by the wet chemical method. In the UHV-NC-AFM measurements at room temperature (RT), however, the atomic scale structure of the TiO2(110) surface was not observed. The TiO2(110) surface may be covered with molecularly adsorbed water after the surface was prepared by the wet chemical method. The structure of the TiO2(110) surface that was prepared by the wet chemical method was consistent with the (1 x 1) bulk-terminated model of the TiO2(110) surface.     

Adsorption of atomic hydrogen on ZnO(1010): STM study

The adsorption of atomic hydrogen on a single crystal ZnO(1010) surface has been studied by scanning tunneling microscopy (STM) under ultrahigh vacuum conditions at room temperature and at elevated temperatures. High resolution STM images indicate that a well-ordered (1x1) H adlayer is formed on the ZnO(1010) surface. The STM data strongly indicate that the hydrogen adsorbs on top of the oxygen atoms forming hydroxyl species. Scanning tunneling spectroscopy (STS) studies reveal a H atom induced metallization at room temperature. In contrast to the clean surface for the hydrogen-covered surface distinct defects structures consisting of missing O and Zn atoms could be identified.     

STM observation of a ruthenium dye adsorbed on a TiO2(110) surface

Individual Ru(4,4'-dicarboxy-2,2'-bipyridine)2(NCS)2 molecules, commonly known as N3, adsorbed on a TiO2 surface were visualized with a scanning tunneling microscope (STM) operated in ultrahigh vacuum. A TiO2(110)-(1 x 1) crystal was taken out from the vacuum vessel and immersed into an acetonitrile solution of N3. A monolayer of pivalate ((CH3)3CCOO-) ions was used to protect the (1 x 1) surface from contamination during the wetting process of the N3 adsorption. The N3 molecules adsorbed on the flat terraces protruded by 0.65 nm from the pivalate monolayer. The image height difference of the admolecules could be understood with the assumption that the N3 molecules anchor to the TiO2 surface via two carboxyl groups. The number density of the N3 molecules on the steps was higher than that on the terraces. The poorly coordinated Ti atoms exposed at the step edges form preferential sites where the carboxyl groups can approach, due to a lower steric obstacle or because the structure of the adsorbed N3 molecules suffers less distortion.     

In-situ scanning tunneling microscopy of carbon monoxide adsorbed on Au(111) electrode

In-situ scanning tunneling microscopy (STM) coupled with cyclic voltammetry was used to examine the adsorption of carbon monoxide (CO) molecules on an ordered Au(111) electrode in 0.1 M HClO4. Molecular resolution STM revealed the formation of several commensurate CO adlattices, but the (9 x radical 3) structure eventually prevailed with time. The CO adlayer was completely electrooxidized to CO2 at 0.9 V versus RHE in CO-free 0.1 M HClO(4), as indicated by a broad and irreversible anodic peak which appeared at this potential in a positive potential sweep from 0.05 to 1.6 V. A maximal coverage of 0.3 was estimated for CO admolecules from the amount of charge involved in this feature. Real-time in-situ STM imaging allowed direct visualization of the adsorption process of CO on Au(111) at 0.1 V, showing the lifting of (radical 3 x 22) reconstruction of Au(111) and the formation of ordered CO adlattices. The (9 x radical 3) structure observed in CO-saturated perchloric acid has a coverage of 0.28, which is approximately equal to that determined from coulometry. Switching the potential from 0.1 to -0.1 V restored the reconstructed Au(111) with no change in the (9 x radical 3)-CO adlattice. However, the reconstructed Au(111) featured a pairwise corrugation pattern with two nearest pairs separated by 74 +/- 1 A, corresponding to a 14% increase from the ideal value of 65.6 A known for the ( radical 3 x 22) reconstruction. Molecular resolution STM further revealed that protrusions resulting from CO admolecules in the (9 x radical 3) structure exhibited distinctly different corrugation heights, suggesting that the CO molecules resided at different sites on Au(111). This ordered structure predominated in the potential range between 0.1 and 0.7 V; however, it was converted into new structures of (7 x radical 7) and ( radical 43 x 2 radical 13) on the unreconstructed Au(111) when the potential was held at 0.8 V for ca. 60 min. The coverage of CO adlayer decreased accordingly from 0.28 to 0.13 before it was completely removed from the Au(111) surface at more positive potentials.     

Comparative study of acetic acid, methanol, and water adsorbed on anatase TiO2 probed by sum frequency generation spectroscopy

Sum frequency generation (SFG) vibrational spectroscopy is used to investigate the surface adsorption of three probe molecules-acetic acid, methanol, and water--on a film composed of nanoscale anatase TiO(2) particles. On the TiO(2) surface, only one adsorption mode, chemisorption, is observed for acetic acid. This is evidenced by one sharp SFG peak in the C-H region, which is stable with time and robust both to evacuation and to the addition of water. A Langmuir constant of (9.21 +/- 0.71) x 10(3) is determined from the adsorption isotherm. In the case of methanol adsorption, however, there are two adsorption modes, molecular physisorption and dissociative chemisorption. The corresponding SFG signals are stable with time but diminished with addition of water. Changes in the SFG features for methanol and for the methoxy species with addition of water and subsequent evacuation provide the first experimental proof of reversible hydroxylation and dehydroxylation at the TiO(2) surface. For water adsorption, only one mode, physisorption, is observed on the hydroxylated TiO(2) surface. The water adlayer is mobile, as is evidenced by variation of the water H-bonded SFG signal with time. Competitive adsorption among the three molecular probes is clearly resolved by in situ SFG measurements. The adsorption strength follows the order acetic acid (strongest), methanol, water (weakest). The adsorption order as well as the difference in response of methanol versus acetic acid adsorption to addition of water has direct implications for understanding TiO(2) photocatalysis as well as the surface modifications involved in TiO(2) photoelectrochemical solar cells and processes in TiO(2) nanomaterial synthesis and assembly.     

Adlayer of hydroquinone on Pt(111) in solution and in a vacuum studied by STM and LEED

Hydroquinone (HQ) adlayers were formed on Pt(111) in HF solution and in a vacuum. By using scanning tunneling microscopy (STM) in solution, it was revealed that HQ formed an ordered structure on Pt(111) with a strong attractive interaction between two adjacent hydroxyl groups in neighboring HQ molecules. After the sample was transferred into a vacuum, low-energy electron diffraction (LEED) measurement was performed, which showed that the (2.56 x 2.56)R16 degrees incommensurate structure of the HQ adlayer was formed in solution. The HQ adlayer on Pt(111) was formed also by vapor deposition, and the identical (2.56 x 2.56)R16 degrees adlayer structure was found by LEED and STM in a vacuum.     

Sb在Cu单晶电极上欠电位沉积的电化学和现场STM研究

应用循环伏安法和现场扫描隧道显微镜研究了在HClO4和H2SO4两种溶液中Sb于Cu(111)和Cu(100)电极上的欠电位沉积.结果表明,不同的表面原子排列和强吸附阴离子的存在将明显影响Sb的欠电位沉积行为.在结构较为开放的Cu(100)表面,Sb形成的欠电位沉积层结构也较为开放,并且伴随着表面合金的形成;而在密堆积的Cu(111)表面上,Sb形成了致密的单层结构.又当Cu(111)表面存在强吸附的SO42-时,Sb原子首先在SO42-吸附层与Cu表面交接的新台阶处成核,随后通过取代SO42-向上一层晶面发展,表现出独特的成核—生长行为;而在弱吸附的HClO4溶液中,Sb的欠电位沉积系以在晶面上随机形成一些单原子层高度的Sb岛为特征.在Cu(100)表面,通过SO42-的诱导共吸附,欠电位沉积的Sb原子形成了开放性更大的(4×4)结构,不同于在HClO4溶液中所形成的(22×22)R45°结构.     

Morphological aspects of sulfate-induced reconstruction of Cu(1 1 1) in sulfuric acid solution: in situ STM study

Using in situ STM the atomic structure and the morphology of a Cu(1 1 1) surface exposed to a dilute sulfuric acid solution have been studied depending on the applied electrode potential. At anodic potentials near the onset of copper dissolution the electrode surface is reconstructed (expanded) caused by the specific adsorption of sulfate anions. The extent of the surface reconstruction strongly depends on the sulfate adsorption rate. Fast sulfate adsorption results in a mainly disordered sulfate adlayer on an unreconstructed copper surface. Conversely, slow sulfate adsorption produces a mainly reconstructed copper surface with a highly ordered sulfate/water coadsorption layer. This adsorbate structure shows an additional long-range Moiré modulation, due to a misfit between the first reconstructed and the second unreconstructed copper layer. This is verified by spectroscopy-like STM experiments, which allow the imaging not only of the adsorbate overlayer, but also of the underlying reconstructed substrate. This type of adsorbate-induced reconstruction is characterized by an expansion of the topmost copper layer. The kinetically slow process of reconstruction can be easily followed by dynamic STM measurements revealing a mass transport out of the topmost copper layer during the slow sulfate adlayer formation. Characteristically, new copper islands nucleate and grow, while the sulfate Moiré adlayer expands over the electrode surface. At cathodic electrode potentials the desorption of the sulfate adlayer is accompanied by the lifting of the surface reconstruction and the massive formation of surface defects, such as small pits and vacancy islands. A continuous cycling of the electrode potential leads to an enormous roughening of the surface morphology.     

Adsorption of water on reconstructed rutile TiO2(011)-(2 x 1): Ti=O double bonds and surface reactivity

Recent combined experimental and theoretical studies (Beck et al., Phys. Rev. Lett. 2004, 93, 036104) have provided evidence for Ti=O double-bonded titanyl groups on the reconstructed rutile TiO(2)(011)-(2 x 1) surface. The adsorption of water on the same surface is now investigated to further probe the properties of these groups, as well as to confirm their existence. Ultraviolet photoemission experiments show that water is adsorbed in molecular form at a sample temperature of 110 K. At the same time, the presence of a 3sigma state in the photoemission spectra and work function measurements indicate a significant amount of hydroxyls within the first monolayer of water. At room temperature, scanning tunneling microscopy (STM) suggests that dissociated water is present, and about 30% of the surface active sites are hydroxylated. These findings are well explained by total energy density functional theory calculations and Car-Parrinello molecular dynamics simulations for water adsorption on the titanyl model of TiO(2)(011)-(2 x 1). The theoretical results show that a mixed molecular/dissociative layer is the most stable configuration in the monolayer regime at low temperatures, while complete dissociation takes place at 250 K. The arrangement of the protonated mono-coordinated oxygens in the mixed molecular/dissociated layer is consistent with the observed short-range order of the hydroxyls in the STM images.     

Dependence of molecular recognition of fullerene derivative on the adlayer structure of zinc octaethylporphyrin formed on Au(100) surface

Adlayers of ZnOEP were prepared on reconstructed Au(100)-(hex) and unreconstructed Au(100)-(1 x 1) surfaces by immersing into a benzene solution containing ZnOEP molecules, and the adlayer structures were characterized by scanning tunneling microscopy (STM). A hexagonally arranged ZnOEP array was formed on an Au(100)-(hex) surface, whereas a rectangularly arranged ZnOEP array was found on an Au(100)-(1 x 1) surface. The adlayer structure of ZnOEP was dependent upon the underlying Au atomic arrangements. Furthermore, an investigation of the spuramolecular assembly for these modified surfaces was carried out by using an open-cage C(60) derivative (opened C(60)). A supramolecular assembled adlayer with a 1:1 composition of opened C(60)/ZnOEP was formed on Au(100)-(hex), whereas aggregates of opened C(60) were found on the ZnOEP-modified Au(100)-(1 x 1) surface. Electrochemical responses of opened C(60) were significantly influenced by underlying ZnOEP arrays. This finding suggests that precise control of underlying ZnOEP adlayers with the Au atomic structure is important to recognize the opened C(60) on them.     

Quantum molecular dynamics study of water on TiO2(110) surface

The adsorption of water on perfect TiO(2)(110) surface is studied by quantum molecular dynamics simulation adopting a periodic model formed by five water molecules on a (5 x 1) surface unit cell of a five layer slab of TiO(2). The total simulation time is 3.2 ps. At about 1.3 ps, one water molecule dissociates with the help of other adsorbed waters and surface bridging oxygens. During the remaining 1.9 ps, the waters and OH groups vibrate, but no more dissociation or recombination is observed. By comparing recent experimental O1s photoemission (x-ray photoelectron spectroscopy) spectra of H(2)O/TiO(2)(110) to the computed spectrum of the adsorbate in the configurations supplied by the molecular dynamics simulation, the observed peaks can be attributed to different oxygen species. The proposed assignment of the main spectral features supports the occurrence of partial water dissociation (approximately 20%) also on a perfect TiO(2) surface.     

Molecular ordering and adsorbate induced faceting in the Ag{110}-(S)-glutamic acid system

The adsorption of the amino acid, (S)-glutamic acid, was investigated on Ag{110} as a function of coverage and adsorption temperature using the techniques of scanning tunneling microscopy, low energy electron diffraction, and reflection absorption infrared spectroscopy. In the monolayer, (S)-glutamic acid was found to adsorb predominantly in the anionic glutamate form. Several discrete ordered adlayer structures were observed depending on preparation conditions. In addition, (S)-glutamic acid was found to induce both one- and two-dimensional faceting of the Ag{110} surface. In some cases, evidence was found that the 2-D faceting involved the creation of a chiral facet distribution. A comparison is made of the Ag/(S)-glutamic acid system with analogous studies of amino acids on Cu.     

Epitaxial supramolecular assembly of fullerenes formed by using a coronene template on a Au(111) surface in solution

Characteristic properties of the coronene layer formed on Au(111) for the epitaxial growth of various fullerenes are described. The electrochemical behavior of the coronene adlayer prepared by immersing a Au(111) substrate into a benzene solution containing coronene was investigated in 0.1 M HClO4. The as-prepared coronene adlayer on Au(111) revealed a well-defined (4 x 4) structure. Structural changes of the array of coronene molecules induced by potential manipulation were clearly observed by in situ scanning tunneling microscopy (STM). Supramolecularly assembled layers of fullerenes such as C60, C70, C60-C60 dumbbell dimer (C120), C60-C70 cross-dimer (C130), and C60 triangle trimer (C180) were formed on the well-defined coronene adlayer on the Au(111) surface by immersing the coronene-adsorbed Au(111) substrate into benzene solutions containing those molecules. The adlayers thus prepared were characterized by comparison with those which were directly attached to the Au(111) surface. The C60 molecules formed a honeycomb array with an internal structure in each C60 cage on the coronene adlayer, whereas C70 molecules were one-dimensionally arranged with the same orientations. The dimers, C120 and C130 molecules, formed an identical structure with c(11 x 4 radical3)rect symmetry. For the C130 cross-dimer molecule, C60 and C70 cages were clearly recognized at the molecular level. It was difficult to identify the adlayer of the C180 molecule directly attached to Au(111); however, individual C180 molecules could be recognized on the coronene-modified Au(111) surface. Thus, the adlayer structures of those fullerenes were strongly influenced by the underlying coronene adlayer, suggesting that the insertion of a coronene adlayer plays an important role in the formation of supramolecular assemblies of fullerenes.     

Electrostatically controlled nanostructure of cationic porphyrin diacid on sulfate/bisulfate adlayer at electrochemical interface

Two different cationic tetraphenyl porphyrins, one with two carboxyphenyl groups in cis-position and the other in trans-position (cis- and trans-H(4)DCPP(2+)), have been examined to control the structure of their 2D supramolecular assemblies in 0.05 M H(2)SO(4) at electrochemical interfaces. Electrochemical scanning tunneling microscopy (EC-STM) images revealed the formation of supramolecularly organized nanostructures of cis-H(4)DCPP(2+) such as dimer, trimer, and tetramer on the (square root(3) x square root(7)) sulfate/bisulfate adlayer, suggesting the importance of both electrostatic interaction between cationic porphyrin core and sulfate/bisulfate adlayer and the hydrogen bond formation between carboxyl groups of the nearest neighbor cationic porphyrins. Trans-H(4)DCPP(4+) ions were also found to be aligned in the square root(3) direction of the sulfate/bisulfate adlayer. The structure of these cationic porphyrin adlayers was found to depend upon the electrode potential; i.e., when the potential was changed in the negative direction, the (square root(3) x square root(7)) sulfate/bisulfate adlayer disappeared, and no ordered arrays were formed. In contrast, when 0.1 M HClO(4) was used as an electrolyte solution, only a disordered array was observed. The results of the present study indicate that the (square root(3) x square root(7)) sulfate/bisulfate adlayer formed on Au(111) in 0.05 M H(2)SO(4) plays a significant role as a nanorail template in the control of electrostatically assembled diacid porphyrin dicarboxylic acid derivative. In addition, the high-resolution STM clearly distinguished between cis-H(4)DCPP(2+) ion and cis-H(2)DCPP molecule. The cis-H(2)DCPP molecules on Au(111) provided an adlayer structure and an electrochemical behavior which are different from those of cis-H(4)DCPP(2+) ions.     

Interaction of organic molecules with the TiO2 (110) surface: ab inito calculations and classical force fields

We have studied the adsorption of a number of organic molecules consisting of methyl, benzyl, and carboxylic groups on the rutile TiO2 (110) surface using both ab initio and atomistic simulation techniques. We have tested the applicability of a simple embedded cluster model to studying the adsorption of small organic molecules on the perfect rutile TiO2 (110) surface, and used this model to develop a classical force field for the interactions of a wide class of organic molecules consisting of these groups with the rutile TiO2 (110) surface. The force field accounts for physisorption and ionic bonding of organic molecules at the surface. It allows the reproduction of adsorption energies and of geometries of organic molecules on the rutile surface. It should be useful for studying diffusion of these molecules and their manipulation with use of AFM and STM tips.