水溶液中碳酸铀酰化合物的电子结构

应用相对论密度泛函理论系统研究了水溶液中非水合化和水合化碳酸铀酰化合物Cn/m(其中n和m分别为结构中碳酸配体和水配体的个数)的结构.溶剂效应采用类导体屏蔽模型(COSMO),并采用零级规整近似(ZORA)方法考虑标量相对论效应和旋-轨耦合相对论效应.电子跃迁采用包含旋-轨耦合相对论效应的含时密度泛函理论并在相关交换势中采用轨道势能统计平均(SAOP)做近似计算.结果表明碳酸配体对配合物结构和电子跃迁有很大的影响.C3/0配合物的稳定性可归于5f轨道参与了高占据轨道的成键作用.增加碳酸盐配体导致最大波长的蓝移,并在近可见光区域出现高强度的吸收.     

Theoretical studies on the complexation of uranyl with typical carboxylate and amidoximate ligands

Understanding of the bonding nature of uranyl and various ligands is the key for designing robust sequestering agents for uranium extraction from seawater. In this paper thermodynamic properties related to the complexation reaction of uranyl(VI) in aqueous solution (i.e. existing in the form of UO₂(H₂O)₅ ²⁺) by several typical ligands (L) including acetate (CH₃CO₂ ^?), bicarbonate (HOCO₂ ^?), carbonate (CO₃ ^2?), CH₃(NH₂)CNO^? (acetamidoximate, AO^?) and glutarimidedioximate (denoted as GDO^2?) have been investigated by using relativistic density functional theory (DFT). The geometries, vibrational frequencies, natural net charges, and bond orders of the formed uranyl-L complexes in aqueous solution are studied. Based on the DFT analysis we show that the binding interaction between uranyl and amidoximate ligand is the strongest among the selected complexes. The thermodynamics of the complexation reaction are examined, and the calculated results show that complexation of uranyl with amidoximate ligands is most preferred thermodynamically. Besides, reaction paths of the substitution complexation of solvated uranyl by acetate and AO^? have been studied, respectively. We have obtained two minima along the reaction path of solvated uranyl with acetate, the monodentate-acetate complex and the bidentate-acetate one, while only one minimum involving monodentate-AO complex has been located for AO^? ligand. Comparing the energy barriers of the two reaction paths, we find that complexation of uranyl with AO^? is more difficult in kinetics, though it is more preferable in thermodynamics. These results show that theoretical studies can help to select efficient ligands with fine-tuned thermodynamic and kinetic properties for binding uranyl in seawater.     

Polymer complexes: supramolecular modeling for determination and identification of the bond lengths in novel polymer complexes from their infrared spectra

Synthesis and characterization of allyl propenyl‐2‐(4‐derivatives phenylazo)butan‐3‐one (HL_n) are described. The monomers obtained contain N?N and carbonyl functional groups in different positions with respect to the allyl group. This structural difference affects the stereochemical structure of the uranyl polymer complexes prepared by the direct reaction of uranyl acetate with the monomers. The polymer complexes are characterized by elemental analyses, ¹H and ¹³C NMR, electronic and vibrational spectroscopy and other theoretical methods. The bonding sites of the hydrazone are deduced from IR and NMR spectra and each of the ligands were found to bond to the UO₂²⁺ ion in a bidentate fashion. The monomers obtained contain N?N and carbonyl functional groups in different positions with respect to the allyl group. IR spectra show that the allyl azo homopolymer (HL_n) acts as a neutral bidentate ligand by coordinating via the two oxygen atom of the carbonyl group, thereby forming a six‐membered chelating ring. The υ₃ frequency of UO₂²⁺ has been shown to be a good molecular probe for studying the coordinating power of the ligands. The υ₃‐values of UO₂²⁺ from IR spectra have been used to calculate the force constant, F_UO (in 10^?8 N/Å) and the bond length R_UO (in Å) of the U? O bond. We adopted a strategy based upon both theoretical and experimental investigations. The theoretical aspects are described in terms of the well‐known theory of 5d–4f transitions. The necessary structural data (coordination geometries and electronic structures) are determined from a framework for the modeling of novel polymer complexes. The Wilson, G. F. matrix method, Badger's formula and the Jones and El‐Sonbati equations were used to determine the stretching and interaction force constants from which the U? O bond distances were calculated. The bond distances of these complexes were also investigated. The effect of Hamett's constant is also discussed. Copyright © 2006 John Wiley & Sons, Ltd.     

Relativistic effects on the electronic structure and bonding of [Ir(CN)5]3−

Four-component relativistic and nonrelativistic molecular orbital calculations were performed for the covalent paramagnetic complex [Ir(CN)₅]³⁻, employing the self-consistent discrete variational method, in the framework of density functional theory. Relativistic effects on the electronic structure and chemical bonding are discussed by comparison of relativistic and nonrelativistic one-electron energy levels, populations, and bond orders. The influence of relativistic effects on calculated absorption energies of the electronic spectrum is briefly assessed. © 1996 John Wiley & Sons, Inc.     

一系列水合和非水合铀酰卤族(F,Cl,Br)配合物在水溶液中的结构和紫外吸收光谱性质的密度泛函理论研究

本文考虑相对论效应并应用密度泛函理论(DFT)研究水溶液中UO2Xn(H2O)5-n(X=F,Cl,Br;n=1～4)和UO2Xn(X=F,Cl,Br;n=1～6)一系列水合和非水合铀酰化合物的结构和紫外吸收光谱性质。将这一系列物质命名为Xnm(X为F,Cl,和Br;n为卤素配体个数,m为水分子配体的个数)。在水溶液中,溶剂化效应采用类导体屏蔽模型(COSMO)并采用SAS溶剂接触曲面构造空穴模拟水溶剂对配合物的作用。配合物的紫外光谱性质采用考虑旋-轨耦合相对论效应的含时密度泛函(SO-TD-DFT)进行计算。U=O键随着F配体数目的增加而明显伸长,然而随Cl和Br配体数目的增加变化较小。随X配体数目的增加和水分子参与配位,铀与X的结合能逐渐减弱。配合物的紫外光谱计算表明铀酰氟的各种配合物并不出现特征吸收峰,而铀酰氯和铀酰溴的各种配合物均有特征吸收光谱。通过分子轨道分析可以很好解释光谱所体现的特征。     

铀酰离子在羟基化α-石英(101)表面的吸附

采用周期性密度泛函理论研究羟基化α-石英（101）面的铀酰离子吸附行为. 通过对铀酰离子的水合作用考虑水溶剂对结构的短程溶剂化效应,并通过类导体屏蔽模型（COSMO）考虑水溶剂对结构的远程溶剂化效应. 吸附能计算结果和电子结构数据均表明水合铀酰离子吸附构型比氢氧化铀酰吸附构型稳定,并且在液相中两种类型的稳定吸附位均为dia-O_s1O_s2位. 两种形式在电子结构上有很大的差异,主要是由于铀与表面作用后成键强弱程度不同,使5f 轨道宽化和略微红移存在差异. 在铀酰离子吸附的基础上利用卤素离子改变铀酰离子配位环境可调整体系的带隙.     

Synthesis, spectroscopic and structural properties of uranyl complexes based on bipyridine N-oxide ligands

By using 2,2′-bipyridine N-oxide (bipyO) and 2,2′-bipyridine N,N′-dioxide (bipyO₂), three new uranyl complexes [UO₂(bipyO)SO₄]·H₂O (1), [UO₂(bipyO)(OH)(NO₃)]₂·H₂O (2) and [UO₂(bipyO₂)H₂O](ClO₄)₂·(3) were synthesized using uranyl salts including non-coordinating or weakly coordinating power of the ClO₄⁻ anion and the strongly coordinating power of NO₃⁻ and SO₄²⁻ anions. All of the compounds were characterized by CHN microanalytical procedures, infrared and luminescence spectroscopy and by single crystal X-ray diffraction. Spectroscopic studies indicate that the bipyO is bound to the uranyl group via the nitrogen and oxygen atoms. Structural analyses revealed that overall bonding pattern is different in each case: 1 is a polymer; in 2 dimeric complex molecules are formed, whereas 3 is composed of monomers. In all of the complexes, the uranium atom is in a seven-coordinate environment.     

Polymer complexes: XLX. Novel supramolecular coordination modes of structure and bonding in polymeric hydrazone sulphadrugs uranyl complexes

Novel five binuclear polymeric dioxouranium(VI) of azosulphadrugs [(azodrug substances) azobenzene sulphonamides] were prepared for the first time. The infrared spectra of the samples were recorded and their fundamental vibration wave number was obtained. The resulting polymeric uranyl complexes were characterized on the basis of their elemental analyses, conductance and spectral (IR, NMR, and electronic spectra) data. The ligation modes of the azosulphadrugs ligands towards uranyl(II) ions were critically assigned and addressed properly on the basis of their IR and their uranyl(II) complexes. The theoretical aspects are described in terms of the well-known theory of 5d–4f transitions. The coordination geometries and electronic structures are determined from a framework for the modeling of novel polymer complexes. The values of ν₃ of the prepared complexes containing UO₂²⁺ were successfully used to calculate the force constant, F_UO (1n 10^?8 N/Å) and the bond length R_UO of the U–O bond. Wilson's, matrix method, Badger's formula, and Jones and El-Sonbati equations were used to calculate the U–O bond distances from the values of the stretching and interaction force constants. The most probable correlations between U–O force constant to U–O bond distance were satisfactorily discussed in terms of “Badger's rule”, “Jones” and “El-Sonbati equations”.     

Structure and UV-Vis spectroscopy of nitrosylthiolatoferrate mononuclear complexes

Density functional calculations for the [(RS)_xFe(NO)_4−x]⁻ (R=CH₃) compounds are carried out using the DFT method with the B3LYP functional. The results can be verified by the experimental data only in the case of the [(RS)₂Fe(NO)₂]⁻ complex. The experimentally characterised molecular structure of [(RS)₂Fe(NO)₂]⁻ (where (RS)₂=(SCH₂CH₂NMeCH₂CH₂CH₂NMeCH₂CH₂S) is properly reproduced by the RB3LYP method. The discrepancy between the calculated spin densities with the integral spin observed experimentally is interpreted in terms of antiferromagnetic coupling between the Fe(III) centre and the NO⁻ ligands. The theoretical analysis gives a good account of some properties observed in these compounds. In particular, the electronic spectrum calculated by the TDDFT method for [(CH₃S)₂Fe(NO)₂]⁻ is similar in shape to the experimental one, although is hypsochromically shifted. The LLCT (S_π→π^*_NO), LMCT (S_π→d) or (π^*_NO→d+S_π→d) and MLCT (d→π^*_NO) transitions are mostly responsible for absorption of the [(RS)_xFe(NO)_4−x]⁻ complexes within UV-Vis. The chemical reactivity of [(RS)₂Fe(NO)₂]⁻ is interpreted basing on the calculated effect of a polar solvent on the ligand polarity and on the character of the HOMO and LUMO orbitals.     

Uranyl compounds and complexes: Electronic structure,chemical bonding and spectral properties

The electronic structure of solid compounds -UO₃, Cs₂UO₂CL₄, UO₂F₄ and complexes UO ₂ ²⁺ and UO₂(NO₃)₂ · 2H₂O has been studied by the cluster discrete variational DV X method in Dirac-Slater and Hartree-Fock-Slater approximation. The analysis of relativistic effects in the electronic structure of uranyl compounds was based on the comparison of non-relativistic and relativistic DV results. The interpretation of X-ray photoelectron spectra of -UO₃ and Cs₂UO₂Cl₄ basing on the MO model is given. The various electronic states contributions to the chemical bonding in uranyl compounds are investigated.     

The hydration of the uranyl dication: Incorporation of solvent effects in parallel density functional calculations with the program PARAGAUSS

The parallel density functional program PARA GAUSS has been extended by a tool for computing solvent effects based on the conductor‐like screening model (COSMO). The molecular cavity in the solvent is constructed as a set of overlapping spheres according to the GEPOL algorithm. The cavity tessellation scheme and the resulting set of point charges on the cavity surface comply with the point group symmetry of the solute. Symmetry is exploited to reduce the computational effort of the solvent model. To allow an automatic geometry optimization including solvent effects, care has been taken to avoid discontinuities due to the discretization (weights of tesserae, number of spheres created by GEPOL). In this context, an alternative definition for the grid points representing the tesserae is introduced. In addition to the COSMO model, short‐range solvent effects are taken into account via a force field. We apply the solvent module to all‐electron scalar‐relativistic density functional calculations on uranyl, UO₂²⁺, and its aquo complexes in aqueous solution. Solvent effects on the geometry are very small. Based on the model [UO₂(H₂O)₅]²⁺, the solvation energy of uranyl is estimated to be about ?400 kcal/mol, in agreement with the range of experimental data. The major part of the solvation energy, about ?250 kcal/mol, is due to a donor–acceptor interaction associated with a coordination shell of five water ligands. One can interpret this large solvation energy also as a compounded effect of an effective reduction of the uranyl moiety plus a solvent polarization. The energetic effect of the structure relaxation in the solution is only about 8 kcal/mol. © 2001 John Wiley & Sons, Inc. Int J Quantum Chem, 2001     

From neutral iminophosphoranes to multianionic phosphazenates. The coordination chemistry of imino-aza-P(V) ligands

This review deals with the chemistry and coordination behaviour of imino-aza phosphorus(V) ligands focussing on s- and p-block as well as Group 11 and 12 metal complexes. Imino phosphorus(V) ligands contain one or more terminal RNP-units, which include iminophosphoranes R₃PNR′, monoanionic diiminophosphinates [R₂P(NR′)₂]⁻, dianionic triiminophosphonates [RP(NR′)₃]²⁻ and trianionic tetraiminophosphates [P(NR′)₄]³⁻. Aza-phosphorus(V) ligands feature bridging PNP units, which include cyclic and polymeric phosphazenes [R₂PN]_n. Imino-aza- phosphorus(V) ligands containing both imino and aza functions include linear diiminodiphosphazenates [N{R₂P(NR′)₂}₂]⁻ and multianionic poly(imino) cyclophosphazeantes such as [N₄{RP(NR′)}₄]⁴⁻ and [N₃{P(NR′)₂}₃]⁶⁻. Imino-aza phosphorus(V) ligands are assembled of three basic building blocks: the cationic tetravalent phosphonium centre (P), the anionic divalent amido function (N) and the terminally arranged R-group. The overall negative charge Z of the resulting ligand system is equal to the difference between the number of P and the number of N-centres: Z=n(P)n(N). Imino-aza phosphorus(V) ligands are electron rich N-donor ligands which co-ordinate via both N(imino) and N(aza) functions and have been applied in numerous metal complexes in order to stabilise low coordination numbers, unusual oxidation states and bonding modes or serve as ligands in homogeneous catalysis. The R-group provides both steric bulk and solubility in non-polar solvents. Multianionic phosphazenates feature a polydentate ligand surface, which facilitates an extremely high metal load. PN units of iminophosphoranes and phosphazenes have acceptor properties and enhance the acidity of α-alkyl and ortho-aryl protons. Deprotonation of P-alkyl and P-aryl iminophosphoranes give ligand systems featuring C,N chelating sites, which are also discussed.     

Phonon spectra and phonon-dependent properties of AgSO4, an unusual sulfate of divalent silver

Phonon spectra of recently synthesized Ag(II)SO₄ have been measured using infrared absorption and Raman scattering spectroscopy, and theoretically predicted using density functional theory calculations. Excellent agreement between experimental and theoretical results with correlation coefficient of 1.05 allowed for full assignment of the experimentally observed vibrational bands, as well as calculation of standard vibrational entropy of AgSO₄ (118.2 J mol⁻¹ K⁻¹), vibrational heat capacity at constant volume (99.1 J mol⁻¹ K⁻¹), zero-point energy (48.3 kJ mol⁻¹). The experimental cut-off frequency of the phonon spectrum equals 1116 cm⁻¹ which translates to the Debye temperature of 1606 K. High frequencies of S–O stretching modes render sulfate connections of Ag(II) attractive precursors of high-T_C superconductors.     

Relativity and the chemistry of UF6: A molecular Dirac—Hartree—Fock—CI study

The electronic structure and bonding of UF₆ and UF₆⁻ are studied within a relativistic framework using the MOLFDIR program package. A stronger bonding but more ionic molecule is found if one compares the relativistic with the nonrelativistic results. The first peak in the photoelectron spectrum of Karlsson et al. is assigned to the 12γ_8u component of the 4t_1u orbital, in agreement with other theoretical and experimental results. Good agreement is found between the experimental and theoretical 5f spectrum UF₆⁻. Some properties, like the dissociation energy and electron affinity, are calculated and the necessity of a fully relativistic framework is shown. The Breit interaction has an effect on the core spinors and the spin-orbit splitting of these spinors but the influence on the valence spectrum is negligible. © 1996 John Wiley & Sons, Inc.     

Theoretical investigation of electronic structures and excitation energies of hexaphyrin and its group 11 transition metal (III) complexes

Density functional theory is carried out to study hexaphyrin and its bis-metal and mixed bis-metal (M = Cu³⁺, Ag³⁺, and Au³⁺) complexes. The electronic structures and bonding situations of them are studied by using natural bond orbital approach and the topological analysis of the electron localization function. Electronic spectra are investigated by using time-dependent density functional theory. The introduction of group 11 transition metals leads to red shifts in the spectra of these metal complexes with respect to that of hexaphyrin. Moreover, it is noteworthy that the spectra of copper contained complexes are mainly derived from combination of ligand-to-metal charge transfer and ligand-to-ligand charge transfer transitions. In addition, the relativistic time-dependent density functional theory with spin-orbit coupling calculations indicate that the effects of spin-orbit coupling on the excitation energies are so small that it is safe enough to neglect spin-orbit coupling for these systems.     

Preparation and characterization of uranyl complexes with phosphonate ligands

The preparation, spectroscopic characterization and thermal stability of neutral complexes of uranyl ion, UO₂ ²⁺, with phosphonate ligands, such as diphenylphosphonic acid (DPhP), diphenyl phosphate (DPhPO) and phenylphosphonic acid (PhP) are described. The complexes were prepared by a reaction of hydrated uranyl nitrate with appropriate ligands in methanolic solution. The ligands studied and their uranyl complexes were characterized using thermogravimetric and elemental analyses, ESI-MS, IR and UV–Vis absorption and luminescence spectroscopy as well as luminescence lifetime measurements. Compositions of the products obtained dependent on the ligands used: DPhP and DPhPO form UO₂L₂ type of complexes, whereas PhP forms UO₂L complex. Based on TG and DTG curves a thermal stability of the complexes was determined. The complexes UO₂PhP·2H₂O and UO₂(DPhPO)₂ undergo one-step decomposition, while UO₂PhP · 2H₂O is decomposed in a two-step process. The thermal stability of anhydrous uranyl complexes increases in the series: DPhPO < PhP < DPhP. Obtained IR spectra indicate bonding of P–OH groups with uranyl ion. The main fluorescence emission bands and the lifetimes of these complexes were determined. The complex of DPhP shows a green uranyl luminescence, while the uranyl emission of the UO₂PhP and UO₂(DPhPO)₂ complexes is considerably weaker.     

Uranyl complexation by monodentate nitrogen donor ligands. A relativistic density functional study

To examine the interaction of uranyl with nitrogen containing groups of humic substances, the model complexes [UO₂(H₂O)₄L_N]²⁺, L_N = NH₂CH₃, N(CH₃)₃, and NC₅H₅ in aqueous solution were studied computationally with an all‐electron relativistic density functional method. Results are compared with the corresponding penta‐aqua complex of uranyl. Although pyridine coordinates with about the same strength as L = H₂O, methylamine binds ～10 kJ mol^?1 stronger and trimethylamine ～40 kJ mol^?1 weaker than a fifth aqua ligand. Yet, each of these ligands L_N donates about the same amount of charge to uranyl as L = H₂O. U? N bonds are ～10 pm longer than the U? O bonds of the aqua ligands. From the present model results, one does not expect that, when compared with carboxyl groups, monodentate N‐containing functional groups contribute significantly to uranyl complexation by humic substances. © 2010 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

Aryl azo imidazole assisted self-assembly of d metal complexes: Influence of halogen substitution and counter ions

A series of eight coordination networks has been obtained by the self-assembly of the aryl azo imidazole based building block and with d¹⁰ metal [Zn(II), Cd(II), and Hg(II)] and counter anion (Cl⁻, NO₃⁻, SCN⁻) in order to rationalize the effect of coordination behavior of the metal ion, the size of the anions and the substitution effects of ligands upon the structure adopted by these metal complexes. Influences of halogen (Cl⁻, Br⁻, and I⁻) substitutions are reflected in the precise molecular level architecture in the individual complexes. The parameters related to the coordination sphere depend on the metal-to-ligand ratios and are also influenced by the solvent of crystallization. A competition between the coordinating capabilities of the counter anion with ligands and its shape led to neutral and anionic metal complexes. Furthermore, various physicochemical studies viz. thermal behaviors, absorption spectra have been conducted to rationalize their structure in solution phase.     

Relation between coordination geometry and stereoelectronic properties in DFT models of the CO-inhibited [FeFe]-hydrogenase cofactor

In this work DFT has been used to characterize model complexes structurally related to the CO-inhibited form (Hox-CO) of [FeFe]-hydrogenases.The investigation of a recently synthesized diiron complex ([Fe₂{MeSCH₂C(Me)(CH₂S)₂}(CN)₂(CO)₄]⁻, [M. Razavet, S.J. Borg, S.J. George, S.P. Best, S.A. Fairhurst, C.J. Pickett, Chem. Commun. 2002, 700-701]) that closely reproduces most features of the inhibited enzyme cofactor, led to the conclusion that the computation of DFT energy differences, as well as the comparison between computed and experimental IR and EPR spectra, does not allow to confidently distinguish among isomers differing for the position of CO and CN ligands, an issue which is relevant not only to fully understand the mechanism of CO-mediated inhibition of the enzyme, but more generally to further understand the factors affecting substrates coordination to the enzyme active site.The latter observation prompted us to probe the effect of the electronic properties of ligands on the structural features of a series of [Fe₂(SCH₂XCH₂S)(CN)₂(CO)₃(L)]ⁿ⁻ complexes related to the Hox-CO form of the enzyme but differing for the nature of L (CO, (CH₃)₂S, CH₃S⁻, CH₃O⁻ and F⁻) and X (CH₂, NH and O). Results revealed that the electronic properties of ligands, as well as the nature of the chelating group bridging the two iron atoms, can affect the coordination geometry of the distal metal center. In particular, it turned out that the inclusion of hard ligands in the Fe coordination sphere could be a viable strategy to selectively favour isomers featuring two CO groups trans to each other. On the other hand, the substitution of propanedithiolate with a di(thiomethyl)amine residue led to the selective stabilization of structures featuring a CN ligand in trans to the μ-CO group, thanks to the formation of an intramolecular hydrogen bond. The relevance of these DFT results for the design of novel biomimetic models of the CO-inhibited [FeFe]-hydrogenases active site is discussed.