Stereoelectronic effects and the problem of the choice of model compounds for organic derivatives of a pentacoordinated silicon atom (taking silatranes as an example)

Anomeric effects at the silicon atom in silatranes XSi(OCH₂CH₂)₃N and model trimethoxysilanes XSi(OMe)₃ (X=H, Me, SiH₃, F, Cl) containing a tetracoordinated silicon atom were studied by the MNDO and AM1 methods. Unlike silatranes, the nature of substituent X pronouncedly affects the type and degree of stereoelectronic effects on the values of X−Si−O−C dihedral angles, X−Si bond lengths, and proton affinities of trimethoxysilanes. The results obtained indicate the necessity of modifying the set of spectral and structural indications of pentacoordination of the anomeric silicon atom established previously and observing the principle of conformational similarity for compared compounds. Bicyclic organosilicon ethers XSi(OCH₂)₃CH were proposed to be used as models of corresponding silatranes. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 6, pp. 1061–1065, June, 1999.     

Counter-ion effect in the nucleophilic substitution reactions at silicon: a G2M(+) level theoretical investigation

Three identity nucleophilic substitution reactions at tetracoordinated silicon atom with inversion and retention pathways: Nu + SiH₃Cl → Nu + SiH₃Cl[Nu = (1)Cl⁻, (2) LiCl, and (3) (LiCl)₂], are investigated using the G2M(+) theory. Our results show that changing the nucleophile can shift the mechanism (favorable pathway), stepwise from a single-well PES for reaction 1, via a double-well PES for reaction 2, to a triple-well PES for reaction 3, indicating the importance of steric and electronic effects on the S_N2@Si. Electronic Supplementary Material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Competition between reactivity and relaxation in free electron attachment to molecules

The reactivity of the C₆F₅X (X=F, Cl, Br, I) molecules following low energy (0–15 eV) electron attachment is studied in the gas phase under single collision conditions, free molecular clusters and condensed molecules by means of crossed beams and surface experiments. All four molecules exhibit a very prominent resonance for low energy electron attachment (<1 eV, attachment cross section >10⁻¹⁴ cm²). Under collision free conditions thermal electron capture generates long lived molecular parent anions C₆F₅X^−*. Along the line Cl, Br, I dissociation into X⁻+C₆F₅ and X+C₆F₅-increasingly competes until for X=1 only chemical fragmentation is observed on the mass spectrometric time scale. In free molecular clusters chemical fragmentation is quantitatively quenched at low energies in favour of associative attachment yielding undissociated, relaxed ions (C₆F₅X)⁻ _n,n≥1. A further dissociative resonance at 6.5 eV in C₆F₅Cl is considerably enhanched in clusters. If these molecules are finally condensed on a solid surface, one observes a prominent Cl⁻ desorption resonance at 6.5 eV. While the quantitative quenching of the chemical reactivity at low energies is due to the additional possibilities of energy dissipation under aggregation, the enhanched reactivity at 6.5 eV is interpreted by the conversion of a core excited open channel resonance in single molecules into a closed channel (Feshbach) resonance when it is coupled to environmental molecules.     

Synthesis of N'-substituted amidines through the cleavage an oxadiazolone heterocycle by weakly basic nucleophiles. Effect of the nature of the nucleophile and of the nucleophile/substrate molar ratio

The reaction of 1-ethoxycarbonylmethyl-5,5,7,7-tetramethyl-2-oxo-tetrahydroimidazo[1,5-b]oxadiazol-6-oxyl with the weakly basic nucleophiles NaN₃, NaCN, KF, KBr, KCl and NaNO₂ has been studied. It was shown for the first time that, as in the case of NaOH and MeONa, the reaction occurs with opening of the oxadiazolone ring to form exo-N-substituted amidines. It was shown that the weakly basic nucleophiles readily react with substrates which contain a substituent sensitive to attack by such nucleophiles as NaOH or MeONa. The effect of the nature of the nucleophiles on the reaction course for opening of the oxadiazolone ring was also studied. It was found that the reactivity of the nucleophiles in DMSO changes in the series F⁻ > CN⁻ > N₃^– >NO₂⁻ > Cl⁻ > Br⁻ and qualitatively correlates with their basicities in this solvent. Examination of the effect of the ratio of the reagents on the degree of conversion of the starting oxadiazolone has shown that a quantity of nucleophiles less than one equivalent also allowed the cleavage reaction of the oxadiazolone heterocycle to go to completion through just increasing the reaction time. The experimental data obtained lends support to the proposed reaction scheme. Dedicated to Academician B. A. Trofimov in his 70^th jubilee. Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 1, pp. 71–78, January, 2009.     

A quantum chemical study of lead(II) thiocomplexes with mono- and bidentate ligands

Model Pb(II) thiocomplexes with mono- and bidentate ligands of the composition [Pb(L^1,2) _n ]²⁻ⁿ (L¹ is (SC₆H₅)⁻ (thiophenolate ion), L² is (S₂CN(CH₃)₂)⁻ (dithiocarbamate ion), n is the number of ligands of 2–6), which simulate fragments of the crystal structures of Pb(II) complex compounds with organic ligands, are studied within density functional theory. Geometric and energy parameters of model complexes with different coordination geometries of the Pb atom are determined and the stereochemical activity of the lone electron pair (LEP, E) of the Pb²⁺ ion is estimated in them. In the studied complexes, the highest Pb-S binding energy is found for the Pb atom surrounded by 2–4 ligands. The geometry of the Pb atom coordinated by S donor atoms can be described in terms of the valence shell electron pair repulsion (VSEPR) model with stereochemically active LEP. The coordination number (cn) of the Pb atom in the most energetically favorable complexes [Pb(SC₆H₅) _n ]²⁻ⁿ is (3+E) − (4+E), and in [Pb(S₂CN(CH₃)₂) _n ]²⁻ⁿ complexes, it is (4+E) and (6+E). Configurations with the mentioned cns are most often observed in the crystal structures of Pb(II) thiocomplex compounds.     

The role of the negatively charged (Si3−Si−F2)− complexes in interactions of fluorine with the (111) surface of silicon

We used the AM1 quantum chemical and cluster models to study the mechanism of formation of a SiF₂-like layer and dissociation of the Si−Si bond during the interaction of atomic fluorine with the (111) surface of silicon. It is shown that the negatively charged (Si₃−Si−F₂)⁻ complex with the five-coordinated centered silicon atom plays an important part in these processes. The above complex participates in the interaction of atomic fluorine with silicon to form a SiF₂-like layer and break the subsurface Si−Si bonds without penetration of fluorine atoms into the subsurface silicon layers. Institute of Semiconductor Physics, Siberian Branch, Russian Academy of Sciences. Translated fromZhurnal Strukturnoi Khimii, Vol. 37, No. 1, pp. 14–21, January–February, 1996. Translated by I. Izvekova     

Fluorosubstituted rhodacarboranes 3,4-(R3P)2-3-H-3,1,2-RhC2B9H11−n F n (n=1, 2, 4): Synthesis, molecular structure, and catalytic properties in hydrosilylation of styrene and phenylacetylene

Hydridorhodacarboranes 3,3-(Ph₂RP)₂-3-H-3,1,2-RhC₂B₉H_11−n F _n (R=Ph, Me;n=1, 2, 4) containing F atoms at the B atoms of the π-carborane ligand were synthesized from (Ph₃P)₃RhCl or (Ph₂MeP)₃RhCl andnido-7,8-C₂B₉H_12−n F _n ⁻ (n=1, 2, 4) salts. Hydridorhodacarboranes 3,3-(Ph₂MeP)₂-3-H-3,1,2-RhC₂B₉H_11−n F _n readily exchange the H atom at the Rh atom for the Cl atom under the action of CH₂Cl₂ to give 3,3-(Ph₂MeP)₂-3-Cl-3,1,2-RhC₂B₉H_11−n F _n . The structures of the 3,3-(Ph₃P)₂-3-H-3,1,2-RhC₂B₉H₇F₄ and 3,3-(Ph₂MeP)₂-3-Cl-3,1,2-RhC₂B₉H₉F₂ complexes were determined by X-ray diffraction analysis. Catalytic properties of the rhodacarbonanes obtained in hydrosilylation of styrene and phenylacetylene by PhMe₂SiH were studied. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 3, pp. 570–578, March, 1997.     

The Silicon Carbonyls Revisited: On the Existence of a Planar Si(CO)4

Recently, some works have focused attention on the reactivity of silicon atom with closed-shell molecules. Silicon may form a few relatively stable compounds with CO, i.e. Si(CO), Si(CO)₂, Si[C₂O₂], while the existence of polycarbonyl (n>2) silicon complexes has been rejected by current literature. In this paper, the reaction of silicon with carbonyl has been reinvestigated by density functional calculations. It has been found that the tetracoordinated planar Si(CO)₄ complex is thermodynamically stable. In Si(CO), silicon carbonyl, and Si(CO)₂, silicon dicarbonyl, the CO are datively bonded to Si; Si(CO)₄, silicon tetracarbonyl, may be viewed as a resonance between the extreme configurations (CO)₂Si + 2CO and 2CO + Si(CO)₂; while Si[C₂O₂], c-silicodiketone, is similar to the compounds formed by silicon and ethylene. A detailed orbital analysis has shown that the Si bonding with two CO is consistent with the use of sp ²-hybridized orbitals on silicon, while the Si bonding with four CO is consistent with the use of sp ² d-hybridized orbitals on silicon, giving rise to a planar structure about Si.     

New route to 1,1-difluoro-5-methylquasisilatrane

A new route to 1,1-difluoro-5-methylquasisilatrane (N→Si) F₂Si(OCH₂CH₂)₂NMe is elaborated: the reaction of chlorinated methyltrifluorosilanes F₃SiCH_3−n Cln (n = 1–3) as well as trifluoro(3-chloropropyl) silane and trifluoro(propenyl)silane with N-methyl-bis(2-hydroxyethyl)amine. The reactivity of the silanes F₃SiCH_3−n Cl _n increases with the number of chlorine atoms, that is, with the electronegativity of the CH_3−n Cl _n group.     

Modellrechnungen an einigen Siliziumwasserstoffverbindungen vom Typ SiHn,SiH n + und SiH n − nach der Einzentrenmethode

Zusammenfassung Es werden molekulare Struktur, Energie des Grundzustandes, Bindungsabstände, Bindungsenergie, Ionisierungsenergie und Protonenaffinität der Siliziumwasserstoffverbindungen SiH _n , SiH _n ⁺ und SiH_n ^– (n=3, 4 oder 5) nach der Einzentrenmethode berechnet.

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OCE-calculations on some silicon hydrides of the type SiH _n , SiH _n ⁺ and SiH _n ^–

OCE-Calculations are reported for molecular structures, ground state energies, bond distances, binding energies, ionization potentials and proton affinities of the silicon hydrides SiH _n , SiH _n ⁺ and SiH _n ^– (n=3, 4 or 5).

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Résumé Calcul par la méthode monocentrique de la structure moléculaire, de l'énergie de l'état fondamental, des longueurs de liaison, des énergies de liaison, des potentiels d'ionisation et des affinités protoniques pour les hydrures de silicium SiH _n , SiH _n ⁺ et SiH _n ^– (n=3, 4 ou 5).

     

Crystal and molecular structures of six-coordinate germanium difluorides and dibromides containing lactamomethyl C,O-chelating ligands

The structures of (O−Ge)-bischelate bis(lactamomethyl)difluoro- and-dibromogermanes [L⁽ⁿ⁾]₂GeX₂, where L is the bidentate lactamomethyl C,O-chelating ligand,n=5–7 (the size of the lactam ring), and X=F or Br, were studied by X-ray diffraction analysis. The six-coordinate Ge atom in these compounds is involved in two hypervalent X−Ge−O bonds whose parameters are compared with the corresponding values in analogous dichlorides and five-coordinate Ge derivatives. On going from difluorides to dichlorides and then to dibromides, the coordination environment about the Ge atom approaches the ideal octahedron. An analogous effect is observed as the size of the lactam ring increases. Published inIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 10, pp. 1799–1805, October, 2000.     

Copper(II) and cobalt(II) salt complexes with 2,6-dimethyl-3.5-pyridinedicarboxylic acid dihydrazide

Complexes of 2,6-dimethyl-3,5-pyridinedicarboxylic acid dihydrazide (DH) with copper(II) and cobalt(II) nitrates and sulfates have been studied by IR and UV spectroscopy, DTA, and X-ray crystallography. The complexation results in polynuclear compounds of the {[M(DH)(ROH) _n ]An _m } _z composition (M = Cu²⁺, Co²⁺; An = SO₄²⁻, NO₃⁻; R = H, i-Pr; n = 0.5–4, m = 1.2, z ≥ 4) containing bidentate DH bridges coordinated to the metal through the carbonyl oxygen atom and the amino group nitrogen atom of the hydrazide moiety.     

Isomerism in OBe3F3 + cation: anab initio study

Ab initio MP2/6-31G^*//HF/6-31G^*+ZPE(HF/6-31G^*) calculations of the potential energy surface in the vicinity of stationary points and the pathways of intramolecular rearrangements between low-lying structures of the OBe₃F₃ ⁺ cation detected in the mass spectra of μ₄-Be₄O(CF₃COO)₆ were carried out. Ten stable isomers with di- and tricoordinate oxygen atoms were localized. The relative energies of six structures lie in the range 0–8 kcal mol⁻¹ and those of the remaining four structures lie in the range 20–40 kcal mol⁻¹. Two most favorable isomers, aC _2v isomer with a dicoordinate oxygen atom, planar six-membered cycle, and one terminal fluorine atom and a pyramidalC _3v isomer with a tricoordinate oxygen atom and three bridging fluorine atoms, are almost degenerate in energy. The barriers to rearrangements with the breaking of one fluorine bridge are no higher than 4 kcal mol⁻¹, except for the pyramidalC _3v isomer (∼16 kcal mol⁻¹). On the contrary, rearrangements with the breaking of the O−Be bond occur with overcoming of a high energy barrier (∼24 kcal mol⁻¹). A planarD _3h isomer with a tricoordinate oxygen atom and linear O−Be−H fragments was found to be the most favorable for the OBe₃H₃ ⁺ cation, a hydride analog of the OBe₃F₃ ⁺ ion; the energies of the remaining five isomers are more than 25 kcal mol⁻¹ higher. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 3, pp. 420–430, March, 1999.     

Reactivity of Pd3(dppm)3(CO)n+ and Pd3(dppm)3(CO)(RCCR)n+ (n?=?0, +1, +2) Towards F?. Evidence of Reactive Intermediates and X-Ray Structure of [Pd3(dppm)3(MeO2CC≡CCO2Me)(F)]PF6

Abstract  

The reactivity of the trinuclear palladium cluster [Pd₃(dppm)₃(CO)] ⁿ⁺ (dppm = bis(diphenylphosphinomethane); n = 2, 1) towards F⁻ was investigated by electrochemical and spectroscopic methods. The reaction depends on the charge of the cluster. The chemical reduction of the cluster dication is observed in the presence of F⁻ generating the paramagnetic monocationic cluster. Spin-trapping experiments with 5,5-dimethyl-1-pyrroline-N-oxide (DMPO) provided evidence for the radical F^• as an intermediate. In a similar manner to the dication, the monocationic cluster [Pd₃(dppm)₃(CO)]⁺ is also reduced, but in a slower process, by the F⁻ ion to produce [Pd₃(dppm)₃(CO)]⁰. Additionally, the alkyne cluster adducts [Pd₃(dppm)₃(CO)(RCCR)] ⁿ⁺ (n = 2, 1; R = CO₂Me) are also reactive towards F⁻. Particularly, the dication adduct leads to a metastable fluoride adduct [Pd₃(dppm)₃(CO)(RCCR)(F)]⁺. The electroreductive behavior of this adduct involves electron-transfer steps and F⁻ exchange equilibriums, for which digital simulation enables the extraction of the thermodynamic parameters (standard potentials and equilibrium constants). Concurrently, the monocation adduct [Pd₃(dppm)₃(CO)(RCCR)]⁺ with F⁻, leads to a disproponation generating 0.5 equiv. of [Pd₃(dppm)₃(CO)(RCCR)(F)]⁺ and 0.5 equiv. of [Pd₃(dppm)₃(CO)(RCCR)]⁰. The former slowly evolves to [Pd₃(dppm)₃(RCCR)(F)]⁺, which was described by X-ray diffraction method.     

Effects of substituents and n-donors on the energies of Si←N,Si←O,and Si=C bonds in hypervalent silenes

The effect of the nature of substituents at sp²-hybridized silicon atom in the R₂Si=CH₂ (R = SiH₃, H, Me, OH, Cl, F) molecules on the structure and energy characteristics of complexes of these molecules with ammonia, trimethylamine, and tetrahydrofuran was studied by the ab initio (MP4/6-311G(d)//MP2/6-31G(d)+ZPE) method. As the electronegativity, χ, of the substituent R increases, the coordination bond energies, D(Si← N(O)), increase from 4.7 to 25.9 kcal mol⁻¹ for the complexes of R₂Si=CH₂ with NH₃, from 10.6 to 37.1 kcal mol⁻¹ for the complexes with Me₃N, and from 5.0 to 22.2 kcal mol⁻¹ for the complexes with THF. The n-donor ability changes as follows: THF ≤ NH₃ < Me₃N. The calculated barrier to hindered internal rotation about the silicon—carbon double bond was used as a measure of the Si=C π-bond energy. As χ increases, the rotational barriers decrease from 18.9 to 5.2 kcal mol⁻¹ for the complexes with NH₃ and from 16.9 to 5.7 kcal mol⁻¹ for the complexes with Me₃N. The lowering of rotational barriers occurs in parallel to the decrease in D _π(Si=C) we have established earlier for free silenes. On the average, the D _π(Si=C) energy decreases by ∼25 kcal mol⁻¹ for NH₃· R₂Si=CH₂ and Me₃N·R₂Si=CH₂. The D(Si←N) values for the R₂Si=CH₂· 2Me₃N complexes are 11.4 (R = H) and 24.3 kcal mol⁻¹ (R = F). sp²-Hybridized silicon atom can form transannular coordination bonds in 1,1-bis[N-(dimethylamino)acetimidato]silene (6). The open form (I) of molecule 6 is 35.1 and 43.5 kcal mol⁻¹ less stable than the cyclic (II, one transannular Si←N bond) and bicyclic (III, two transannular Si←N bonds) forms of this molecule, respectively. The D(Si←N) energy for structure III was estimated at 21.8 kcal mol⁻¹. Dedicated to Academician N. S. Zefirov on the occasion of his 70th birthday. Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 9, pp. 1952–1961, September, 2005.     

Heteroorganic betaines

The structures of three silicon-containing organophosphorus betaines containing the⁺P−C−Si−S⁻ fragment were established by X-ray diffraction study. Due to the attractive electrostatic interaction between the anionic and cationic centers, the main chain adopts agauche conformation, whereas this chain in theS-ethyl derivative of the phosphonic salt [Ph₃P⁺−CMe₂−SiMe₂SEt]Br⁻ adopts atrans conformation. The changes in the geometric parameters of betaines depending on the substituents at the phosphorus, carbon, and silicon atoms were analyzed. The P−S bond can in principle be formed, resulting in the closure of the four-membered ring provided that additional steric hindrances at the silicon atom occur.     

Tuning the Lewis Acidity of Neutral Silanes Using Perfluorinated Aryl- and Alkoxy Substituents

The emerging field of Lewis acidic silanes demonstrates the versability of molecular silicon compounds for catalytic applications. Nevertheless, when compared to the multifunctional boron Lewis acid B(C₆F₅)₃, silicon derivatives still lack in terms of reactivity. In this regard, we demonstrate the installation of perfluorotolyl groups (Tol^F) on neutral silicon atoms to obtain the respective tetra- and trisubstituted silanes Si(Tol^F)₄ and HSi(Tol^F)₃. These compounds were fully characterized including SC-XRD analysis but unexpectedly showed no significant Lewis acidity. By using strongly electron-withdrawing perfluorocresolato groups (OTol^F) the tetrasubstituted silane Si(OTol^F)₄ was obtained, bearing an 8 % increased Δδ(³¹P) shift when applying the Gutmann-Beckett method, compared to literature-known Si(OPh^F)₄. Ultimately the heteroleptic Si(Ph^F)₂pin^F was successfully synthesized and fully characterized including SC-XRD analysis, introducing a highly Lewis acidic silicon atom holding two silicon-carbon bonds.     

Synthesis of stereoisomers of <Emphasis Type="Italic">p-tert</Emphasis>-butylthiacalix[4]arenes tetrasubstituted at the lower rim containing secondary amide groups and their complexation with a number of singly charged anions

The ability of new synthetic receptors, i.e., p-tert-butylthiacalix[4]arenes tetrasubstituted at the lower rim and containing secondary amide groups to form complexes with a number of spherical (F⁻, Cl⁻, Br⁻, I⁻), Y-shaped (MeCOO⁻), trigonal (NO₃ ⁻), and tetrahedral (H₂POO₄ ⁻) anions has been studied. It was shown that the nature of substituents on the nitrogen atom of the amide groups and configuration of the macrocycle affect the stability constant values of the forming complexes.     

Quantum-chemical study of the stereoelectronic structure of 1-fluorosilatrane, 1,1-difluoroquasisilatrane, 1,1,1-trifluorohyposilatrane,and cations formed thereof

Quantum-chemical study of the electronic structure and the equilibrium geometry of the molecules X_4−n M(OCH₂CH₂) _n NH_3−n and cations X_3−n [M(OCH₂CH₂) _n NH_3−n ]⁺ (M = Si, Ge; X = F, H; n = 1–3) is performed by the B3LYP method using the cc-PVDZ basis set. It is shown that for X = F the strength of the coordination bond N→M increases with the number of the cycles (n), while for X = H, on the contrary, decreases, that is, the strength of the N→M bond increases with the total electronegativity of the substituents surrounding atom M. Effect of the number of the coordination cycles on the strength of the N→M bond in the cations is negligible. The obtained results agree with the experimental data on the structure and spectral properties of the studied compounds.