Evaluation of methane negative ion chemical ionization mass spectra of polycyclic aromatic hydrocarbons and related compounds

Negative ion chemical ionization (NICI) mass spectra with methane as reagent gas and the ion abundance ratios of the negative to the positive base peak for 51 polycyclic aromatic hydrocarbons and related compounds were measured and evaluated for highly sensitive detection and isomer differentiation. Either [M ? H]^?, M^?˙ or MH^? was the base peak, except for one compound with [M ? H₂]^?˙ as its base peak. The numbers of compounds with [M ? H]^?, M^?˙ or MH^? as their base peaks were 17, 26 and 7, respectively. Many of the compounds with [M ? H]^? as the base peak had an aliphatic part in their structure. The average value of N/P (negative/positive ion abundance ratio at the base peaks) was < 1. Many of the compounds with M^?˙ as the base peak had a relatively high electron affinity. A correlation between electron affinities and ion abundances was found. In most cases, the N/P ratios were > 1, and even reached 400 in benzo [a] pyrene. Many of the compounds with MH^? as their base peaks had a phenyl group, in which cases the N/P ratios were < 1. In the case of compounds with 18 or fewer carbon atoms, in particular, it was easy to distinguish isomers by comparing their NICI mass spectra. The N/P values served as a guideline in sensitive detection. Nine compounds achieved an N/P of ≥50.     

The gas enhanced negative ion mass spectra of polychloroanisoles

Methane or a methane–oxygen mixture was used as an enhancement gas to obtain negative ion mass spectra of polychloroanisoles. Dichloroanisoles did not react with oxygen but the more highly chlorinated anisoles did. Compounds with hydrogen ortho to the methoxy group had [M? 1]^? ions, while others gave . The fragment arose through loss of an ortho chlorine and amethyl hydrogen. The loss of HCl followed by oxygen displacement of a remaining ortho or para chlorine produced [M? 55]^? ions; the para position was the preferred site of displacement. Another ion-molecule reaction with oxygen leads to [M? CH₂Cl]^?. The fragmentations resemble those of chlorinated aromatics such as the polychlorodibenzodioxins.     

Ion-molecule reactions observed for nitroaromatic compounds in negative ion fast atom bombardment mass spectrometry

Analyses of a series of nitroaromatic compounds using fast atom bombardment (FAB) mass spectrometry are discussed. An interesting ion-molecule reaction leading to [M + O ? H]^? ions is observed in the negative ion FAB spectra. Evidence from linked-scan and collision-induced dissociation spectra proved that [M + O ? H]^? ions are produced by the following reaction: M + NO₂^? → [M + NO₂]^? → [M + O ? H]^?. These experiments also showed that M^?˙ ions are produced in part by the exchange of an electron between M and NO₂^? species. All samples showed M^?˙, [M ? H]^? or both ions in their negative ion FAB spectra. Not all analytes studied showed either [M + H]⁺ and/or M⁺˙ in the positive ion FAB spectra. No M⁺˙ ions were observed for ions having ionization energies above ～9 eV.     

Characterization of C8H10 alkylbenzenes by negative ion mass spectrometry

The O^?˙ chemical ionization mass spectrri of the C₈H₁₀ alkylbenzenes, o-, m-. andp -xylene and ethylbenzene, show formation of [M ? H + O]^?, [M ? H]^?, [M ? H₂]^?˙ and, for the xylenes, [M ? CH₃ + O]^? as primary reaction products; the relative importance of these products depends on the isomer. However, [OH]^? is a primary product from reaction of O^?˙ with both the C₈H₁₀ isomers and hydrogen-containing impurities; [OH]^? reacts further with the alkylbenzenes to produce [M ? H]^? with the result that the chemical ionization mass spectra depend on experimental conditions such as sample size and the presence of impurities. The collision-induced charge inversion mass spectra of the [M ? H + O]^? and [M ? H]^? products allow only distinction of ethylbenzene from the xylenes. However, the collision-induced charge inversion mass spectra of the [M ? H₂]^?˙ ions show differences which allow identification of each isomer.     

A study of characteristic fragmentation of isoflavonoids by using negative ion ESI-MSn

Isoflavone mono‐O‐glycosides were investigated by electrospray ionization tandem mass spectrometry with a quadrupole linear ion trap mass spectrometer in negative ion mode. Isoflavonoids having different positions of glycosylation or methylation were differentiated according to the relative abundances of Y₀^? and [Y₀? H]^?? ions generated from the [M ? H]^? ion. It is found that the site of glycosyl or methyl group significantly affects relative abundances of the Y₀^? and [Y₀? H]^?? ions. In addition, the characteristic ion [Y₀? 2H]^? was observed in the product ion spectrum of genistein 7‐O‐β‐D ‐glucoside and was also detected, together with the [Y₀? CH₃]^?? and [Y₀? H ? CH₃]^? ions in the product ion spectra of glycitin and 6‐methoxy genistein 7‐O‐β‐D ‐glucoside. The structures of isoflavonoids can be characterized and identified according to the formation of these diagnostic ions. The results obtained from this investigation can promote the rapid identification of isoflavonoids in crude plant extracts. Copyright © 2010 John Wiley & Sons, Ltd.     

Laser desorption mass spectrometry of squaric acid and its salts

The laser desorption mass spectrometry of the oxocarbon squaric acid (3,4-dihydroxy-3-cyclobutene-1,2-dione) and its salts of the form A₂C₄O₄ (A = cation) is described. Both positive and negative ion spectra were obtained. The positive ion spectrum of the acid is characterized by an ion corresponding to loss of CO from [M + H]⁺. The negative ion spectrum shows an intense [M ? H]^? peak in addition to a dimer species. The alkali salt spectra contain [M + A]⁺ in the positive mode and [M ? A]^? and an intense [C₄HO₄]^? in the negative mode. The smaller alkali salts also have an [M + H]⁺ adduct ion. Unlike the alkali squarates, the ammonium salt shows ions corresponding to losses of neutrals from the molecular adduct in the positive ion spectrum and a dimer species in the negative ion spectrum. Molecular weight information was obtained in all cases. A (bis) dicyanomethylene derivative of potassium squarate was also studied. Some field desorption mass spectrometry results are presented for comparison.     

Positive and negative ion mass spectra of Aryl-ONN-azoxy compounds containing electron withdrawing groups

The positive and negative ion mass spectra, at 70 eV, of p-RC₆H₄N(O)?NCOOCH₃ (R?H, Cl, Br, NO₂), C₆H₅N(O)?NCOOC₂H₅, p-RC₆H₄N(O)?NCONH₂ (R?H, Cl, Br, NO₂) and p-RC₆H₄N(O)?NCOC₆H₅ (R?H, Cl, Br, NO₂) are reported. The azoxyester derivatives show abundant molecular ions and a number of weak fragment and rearrangement ions in the positive ion mass spectra, whereas weak molecular ions and abundant low mass fragment ions are present in the negative ion mass spectra. Similar behaviour is observed in the mass spectra of the azoxyamides. Conversely, for the azoxycarbonyl compounds the positive molecular ion is absent. A ready cleavage of the N? CO bond occurs and only few fragments of low diagnostic value are formed, whereas the negative molecular ion is the base peak for all these compounds with the exception of the p-NO₂ derivative, where [M? O]^?? is the base peak and [M]^?? is the second major ion. The behaviour under electron impact of these classes of compounds is compared with that of azoxycyanides reported previously.     

Negative ion mass spectra of dicarboxylic acids

The negative ion mass spectra of dicarboxylic acids show [M]^?˙ and prominent [M – H]^?ions. These ions can therefore be used to determine the molecular weight of dicarboxylic acids which do not give positive molecular ions. The [C₂H₃]^? ion is a base peak in the spectra of maleic and fumaric acids. Isomeric phthalic acids are readily differentiated.     

The unusual fragmentation of long‐chain feruloyl esters under negative ion electrospray conditions

Long‐chain ferulic acid esters, such as eicosyl ferulate ( 1 ), show a complex and analytically valuable fragmentation behavior under negative ion electrospay collision‐induced dissociation ((?)‐ESI‐CID) mass spectrometry, as studied by use of a high‐resolution (Orbitrap) mass spectrometer. In a strong contrast to the very simple fragmentation of the [M + H]⁺ ion, which is discussed briefly, the deprotonated molecule, [M – H]^?, exhibits a rich secondary fragmentation chemistry. It first loses a methyl radical (MS²) and the ortho‐quinoid [M – H – Me]^‐? radical anion thus formed then dissociates by loss of an extended series of neutral radicals, C_nH_2n + 1^? (n = 0–16) from the long alkyl chain, in competition with the expulsion of CO and CO₂ (MS³). The further fragmentation (MS⁴) of the [M – H – Me – C₃H₇]^? ion, discussed as an example, and the highly specific losses of alkyl radicals from the [M – H – Me – CO]^‐? and [M – H – Me – CO₂]^‐? ions provide some mechanistic and structural insights.     

Reference standards for negative ion mass spectrometry

The negative ion mass spectra of phosphonitrile chlorides (PNCl₂)_n (n≥3) are studied. Since this series of compounds give very intense negative [M]^? and [M? Cl]^? ions, they can be used as good reference standards for negative ion mass spectrometry.     

Collisionally activated mass spectra of [M?H] ions of polyhydroxy and hydroxy ether compounds

Collision-induced decomposition/mass-analyzed ion kinetic energy or collisionally activated mass spectra of [M ? H]^? ions of polyhydroxy compounds and other alcohols and ethers are reported. The [M ? H]^? ion of each compound is produced under OH^? negative ion chemical ionization mass spectrometric conditions. Characteristic fragmentations are observed that include production of [M ? H ? 2]^?, [M ? H ? 18]^? and [M ? H ? 32]^? ions. Certain other fragment ions in the collisionally activated mass spectra make it possible to distinguish among structural isomers. In polyhydroxy compounds, fragmentation increases as the number of hydroxyl groups increase, and carbon-carbon bond cleavage becomes favored.     

Ring expansion and hydrogen scrambling in the molecular ion of 3-methylthiophene

The ratio [M ? D]/{[M-D] + [M ? H]} in the 70 eV mass spectra of six deuterated 3-methylthiophenes has been determined. From these values the mole fractions of the molecular ions that lose hydrogen atoms specifically from the various positions of the molecule were calculated, as well as the mole fraction in which the hydrogen atoms are fully scrambled before hydrogen elimination. It appears that hydrogen atoms are mainly lost from a fully scrambled [C₅H₆S]⁺· ion and from the α-position of the original molecular ion. A deuterium isotope effect of 1·60 to 1·72 was calculated for the hydrogen elimination. The reaction was also studied at low electron energies. In order to determine the degree of scrambling in the [C₅H₅S]⁺ ions, some decomposition reactions of this ion were investigated.     

Identification of position isomers by energy‐resolved mass spectrometry

This study reports an energy‐resolved mass spectrometric (ERMS) strategy for the characterization of position isomers derived from the reaction of hydroxyl radicals (^●OH) with diphenhydramine (DPH) that are usually hard to differentiate by other methods. The isomer analogues formed by ^●OH attack on the side chain of DPH are identified with the help of a specific fragment ion peak (m/z 88) in the collision‐induced dissociation (CID) spectrum of the protonated molecule. In the negative ion mode, the breakdown curves of the deprotonated molecules show an order of stability (supported by density functional theory (DFT) calculations) ortho > meta > para of the positional isomers formed by the hydroxylation of the aromatic ring. The gas phase stability of the deprotonated molecules [M ? H]^? towards the benzylic cleavage depends mainly on the formation of intramolecular hydrogen bonds and of the mesomeric effect of the phenol hydroxyl. The [M ? H]^? molecules of ortho and meta isomers result a peak at m/z 183 with notably different intensities because of the presence/absence of an intramolecular hydrogen bonding between the OH group and C9 protons. The ERMS approach discussed in this report might be an effective replacement for the conventional methods that requires very costly and time‐consuming separation/purification methods along with the use of multi‐spectroscopic methods. Copyright © 2015 John Wiley & Sons, Ltd.     

Sterically hindered phenols in negative ion mobility spectrometry–mass spectrometry

Negative corona discharge atmospheric pressure chemical ionization (APCI) was used to investigate phenols with varying numbers of tert‐butyl groups using ion mobility spectrometry–mass spectrometry (IMS‐MS). The main characteristic ion observed for all the phenolic compounds was the deprotonated molecule [M–H]⁻. 2‐tert‐Butylphenol showed one main mobility peak in the mass‐selected mobility spectrum of the [M–H]⁻ ion measured under nitrogen atmosphere. When air was used as a nebulizer gas an oxygen addition ion was seen in the mass spectrum and, interestingly, this new species [M–H+O]⁻ had a shorter drift time than the lighter [M–H]⁻ ion. Other phenolic compounds primarily produced two IMS peaks in the mass‐selected mobility spectra measured using the [M–H]⁻ ion. It was also observed that two isomeric compounds, 2,4‐di‐tert‐butylphenol and 2,6‐di‐tert‐butylphenol, could be separated with IMS. In addition, mobilities of various characteristic ions of 2,4,6‐trinitrotoluene were measured, since this compound was previously used as a mobility standard. The possibility of using phenolic compounds as mobility standards is also discussed. Copyright © 2009 John Wiley & Sons, Ltd.     

A 15N labelling,FD and FAB study of ammonia loss from protonated arginine molecules

The positive ion field desorption (FD) spectrum of arginine taken at the best anode temperature only contains a peak due to [M+H]⁺ ions. At higher emitter temperatures a considerable amount of fragmentation is induced and the [M+H? NH₃]⁺ ions become most abundant. Specific ¹⁵N labelling reveals that the eliminated ammonia molecule, exclusively, contains one of the terminal nitrogen atoms of the guanidyl group. This also applies to the ammonia loss from metastably decomposing [M+H]⁺ ions. The positive ion fast atom bombardment (FAB) spectrum shows more fragmentation than the FD spectrum. In contrast with the FD results, the [M+H]⁺ ions generated upon FAB with ion lifetimes <10^?6 s eliminate both ammonia containing one of the terminal nitrogen atoms of the guanidyl group and ammonia containing the α-amino group in the ratio of 1.35, as found by ¹⁵N labelling. The metastably decomposing [M+H]⁺ ions, however, eliminate only the former ammonia molecule. In the negative ion FD and FAB spectra no other peak than that corresponding to the [M? H]^? ion is observed. Some attention has been paid to the thermal degradation of arginine on the basis of a few Curie-point pyrolysis experiments.     

The unexpected formation of [M − H]+ species during MALDI and dopant‐free APPI MS analysis of novel antineoplastic curcumin analogues

Unusual ionization behavior was observed with novel antineoplastic curcumin analogues during the positive ion mode of matrix‐assisted laser desorption ionization (MALDI) and dopant‐free atmospheric pressure photoionization (APPI). The tested compounds produced an unusual significant peak designated as [M ? H]⁺ ion along with the expected [M + H]⁺ species. In contrast, electrospray ionization, atmospheric pressure chemical ionization and the dopant‐mediated APPI (dopant‐APPI) showed only the expected [M + H]⁺ peak. The [M ? H]⁺ ion was detected with all evaluated curcumin analogues including phosphoramidates, secondary amines, amides and mixed amines/amides. Our experiments revealed that photon energy triggers the ionization of the curcumin analogues even in the absence of any ionization enhancer such as matrix, solvent or dopant. The possible mechanisms for the formation of both [M ? H]⁺ and [M + H]⁺ ions are discussed in this paper. In particular, three proposed mechanisms for the formation of [M ? H]⁺ were evaluated. The first mechanism involves the loss of H₂ from the protonated [M + H]⁺ species. The other two mechanisms include hydrogen transfer from the analyte radical cation or hydride abstraction from the neutral analyte molecule. Copyright © 2014 John Wiley & Sons, Ltd.     

Reactivity in the gas phase. Behaviour of isoxazoles under negative ion chemical ionization conditions

[M ? H⁺]^? ions of isoxazole (la), 3-methylisoxazole (1b), 5-methylisoxazole (1c), 5-phenylisoxazole (1d) and benzoylacetonitrile (2a) are generated using NICI/OH^? or NICI/NH₂^? techniques. Their fragmentation pathways are rationalized on the basis of collision-induced dissociation and mass-analysed ion kinetic energy spectra and by deuterium labelling studies. 5-Substituted isoxazoles 1c and 1d, after selective deprotonation at position 3, mainly undergo N ? O bond cleavage to the stable α-cyanoenolate NC ? CH ? CR ? O^? (R = Me, Ph) that fragments by loss of R? CN, or R? H, or H₂O. The same α-cyanoenolate anion (R = Ph) is obtained from 2a with OH^?, or NH₂^?, confirming the structure assigned to the [M ? H⁺]^? ion of 1d, On the contrary, 1b is deprotonated mainly at position 5 leading, via N? O and C(3)? C(4) bond cleavages, to H? C ≡ C? O ^? and CH₃CN. Isoxazole (1a) undergoes deprotonation at either position and subsequent fragmentations. Deuterium labelling revealed an extensive exchange between the hydrogen atoms in the ortho position of the phenyl group and the deuterium atom in the α-cyanenolate NC ? CD = CPh ? O^?.     

Fragmentation of deprotonated cyclic dipeptides by electrospray ionization mass spectrometry

The fragmentation pathways of deprotonated cyclic dipeptides have been studied by electrospray ionization multi‐stage mass spectrometry (ESI‐MSⁿ) in negative mode. The results showed that the fragmentation pathways of deprotonated cyclic dipeptides depended significantly on the different substituents, the side chains of amino acid residues at the diketopiperazine ring. In the spectra of deprotonated cyclic dipeptides, the ion [M? H? substituent radical]^? was firstly observed in the ESI mode. The characteristic fragment ions [M? H? substituent radical]^? and [M? H? (substituent? H)]^? could be used as the symbols of particular cyclic dipeptides. The hydrogen/deuterium (H/D) exchange experiment, the high‐resolution mass spectrometry (Q‐TOF) and theoretical calculations were used to rationalize the proposed fragmentation pathways and to verify the differences between the fragmentation pathways. The relative Gibbs free energies (ΔG) of the product ions and possible fragmentation pathways were estimated using the B3LYP/6–31++G(d, p) model. The results have some potential applications in the structural elucidation and interpretation of the mass spectra of homologous compounds and will enrich the gas‐phase ESI‐MS ion chemistry of cyclic dipeptides. Copyright © 2009 John Wiley & Sons, Ltd.     

Kinetic studies in mass spectrometry—IV. The [M — Cl] reaction in substituted chlorobenzenes and the question of molecular ion isomerization.

The [M]⁺˙ → [M ? Cl]⁺ reaction in a series of m- and p-X substituted chlorobenzenes has been studied, utilizing a simple kinetic approach, comparison of metastable ion relative abundances, and by measurement of ionization and appearance potentials. All evidence obtained is consistent with rearrangement prior to cleavage in the molecular ions, in which substituent position becomes effectively randomized. These findings are related to known hydrogen randomization reactions occurring in either the molecular ion or [M ? Cl] ion of chlorobenzenes. Mechanisms involving carbon scrambling via such species as ionized benzvalenes or prismanes, or ring-opening to isomeric acyclic molecular ions in which hydrogen randomization might occur can be entertained, but mechanisms involving simple hydrogen shifts in the intact benzene ring appear less likely.