Mass and kinetic energy spectrometries of alkylketenes

Real-time analysis of alkylketenes synthesized by flash vacuum thermolysis (FVT) of acid chlorides has been performed by mass spectrometric techniques using a triple sector (E/B/E) spectrometer. The major high energy reactions of the molecular ions consist of β-cleavages relative to the C?C bond of the ketene function, followed by decarbonylation. The unimolecular reactions of the metastable molecular ions are often different as shown by collisional activation of the fragment ions produced in a field-free region of the spectrometer and also from estimated heats of formation.     

A Facile,One-Pot Synthesis of Azoic Compounds and Anthraquinone Derivatives Containing Dialkyl Phosphoryl Moieties in Multicomponent Reactions

Protonation of the reactive 1:1 intermediates produced in the reactions between triphenylphosphine and dialkyl acetylenedicarboxylates by 1-amino-anthraquinone or 1,5-diphenylcarbazone as a core dye leads to vinyl phosphonium salts, which undergo Michael addition with conjugate base of NH compounds to produce stable phosphorus ylides as novel dyes in fairly good yields. These ylides can exist in two geometrical isomers (Z) and (E) for 3, because the negative charge of the ylide moiety of these compounds are strongly conjugated with the adjacent carbonyl group. Rotation around the carbon–carbon double bond is slow in the (Z) and (E) geometrical isomers on the NMR time scale at ambient temperature. These compounds are assigned by their IR, ¹H, ¹³C NMR spectral data as well as their mass spectroscopic data.     

The modern mass spectrometer—a complete chemical laboratory

Using nitrobenzene as an example, various ways in which a contemporary mass spectrometer can be utilized to yield a wealth of information about the compound studied are reviewed. Applying a variety of different techniques and procedures, in addition to the conventional low resolution mass spectrum, the following nitrobenzene spectra have been obtained: collision induced dissociation mass spectrum, mass analysed ion kinetic energy spectra, collision induced dissociation mass analysed ion kinetic energy spectra, spectra obtained at constant B/E, spectra obtained at constant B²/E, high voltage scans of metastable ion fragmentation processes, consecutive fragmentations in different field free regions, charge exchange mass spectra, charge stripping mass spectra, doubly charged ion mass spectra, chemical ionization mass spectra, negative ion mass spectra, negative ion mass analysed ion kinetic energy spectra, negative ion mass analysed ion kinetic energy collision induced dissociation spectra, charge inversion spectra, etc. The complementary types of information available from the above studies are discussed to show the unique versatility of mass spectrometry as a technique for the examination of organic compounds.     

Electron ionization and electrospray ionization mass spectrometric study of a series of isomeric N‐chloro(or bromo)benzyl‐substituted (E)‐2′(3′‐ or 4′)‐hydroxy‐4‐stilbazole halides

The electron ionization (EI) mass spectra and electrospray ionization (ESI) mass spectra of a series of isomeric N‐chlorobenzyl‐ and N‐bromobenzyl‐substituted (E)‐2′(3′ or 4′)‐hydroxy‐4‐stilbazole chlorides and bromides (1–12) were recorded. The fragmentation pathways of all of the compounds and the characteristic fragment ions formed by EI‐MS were studied by means of B/E and B²/E constant linked‐scanning techniques. The formation of ions originating from preionization reactions, characteristic of quaternary halides under EI‐MS conditions, such as the elimination of chloro‐ or bromobenzyl halides, dehydrohalogenation or substitution reactions, is explained. As soft ionization methods cause no such degradation reactions, the ESI‐MS spectra of the studied compounds were also obtained for comparison. We thus demonstrated the applicability of EI‐MS even in cases when preionization takes place, as long as such secondary processes are properly accounted for. Copyright © 2010 John Wiley & Sons, Ltd.     

Doubly charged ion mass spectra of organophosphorus compounds

Doubly charged ion mass spectra have been obtained for 11 organophosphorus compounds. Methane has been used as a target gas to increase the probability of single electron transfer collisions in the first field-free region of an Hitachi RMU-7L mass spectrometer. In general, the spectra of organophosphorus compounds do not exhibit molecular ions but are dominated by fragment ions, many of which must be formed by rearrangement processes. A geometry-optimized self-consistent field molecular orbital method has been employed to compute energies and structural parameters for prominent ions. In addition, a diabatic curve crossing model has been used to examine the single electron transfer reactions responsible for intense ions in the doubly charged ion mass spectra. Appearance energies measured for ions prominent in the 2E spectra of organophosphorus compounds have ranged from 23 to 38 eV.     

Electrophilic Reactivities of Azodicarboxylates

The kinetics of the reactions of the azodicarboxylates 1 with the enamines 2 have been studied in CH₃CN at 20 °C. The reactions follow a second‐order rate law and can be described by the linear free energy relationship log k₂(20 °C)=s(N+E) (E=electrophilicity parameter, N=nucleophilicity parameter, and s=nucleophile‐specific slope parameter). With E parameters from ?12.2 to ?8.9, the electrophilic reactivities of 1 turned out to be comparable to those of α,β‐unsaturated iminium ions, amino‐substituted benzhydrylium ions, and ordinary Michael acceptors. While the E parameters of the azodicarboxylates 1 determined in this work also hold for their reactions with triarylphosphines, they cannot be used for estimating rate constants for their reactions with amines. Comparison of experimental and calculated rate constants for cycloadditions and ene reactions of azodicarboxylates provides information on the concertedness of these reactions.     

Mass spectral fragmentation pathways in nitramines. A collision-induced dissociation study

A collision-induced dissociation (CID) study of five synthesized nitramines was carried out using a hybrid EBQQ mass spectrometer. CID spectra were obtained in two modes: B/E linked-scan mode and MS/MS mode using the EB sector combination as the first mass spectrometer and the QQ as collision cell and second mass spectrometer, respectively. Fragmentation pathways of the compounds were determined in the electron-impact mode. It was found that dominant fragmentation pathways included the loss of OH, NO₂ and HNO₂ in addition to the loss of CH₂NNO and CH₂NNO₂.     

Reversible Photoswitching of Isolated Ionic Hemiindigos with Visible Light

Indigoid chromophores have emerged as versatile molecular photoswitches, offering efficient reversible photoisomerization upon exposure to visible light. Here we report synthesis of a new class of permanently charged hemiindigos (HIs) and characterization of photochemical properties in gas phase and solution. Gas-phase studies, which involve exposing mobility-selected ions in a tandem ion mobility mass spectrometer to tunable wavelength laser radiation, demonstrate that the isolated HI ions are photochromic and can be reversibly photoswitched between Z and E isomers. The Z and E isomers have distinct photoisomerization response spectra with maxima separated by 40–80 nm, consistent with theoretical predictions for their absorption spectra. Solvation of the HI molecules in acetonitrile displaces the absorption bands to lower energy. Together, gas-phase action spectroscopy and solution NMR and UV/Vis absorption spectroscopy represent a powerful approach for studying the intrinsic photochemical properties of HI molecular switches.     

The Chemistry of Isolated Cations

Organic ions decompose in the field-free regions of a mass spectrometer after a relatively well-defined lifetime (t ≈ 10^?5s). This lifetime is very long compared with the time-scale of molecular bond vibrations and consequently the excess internal energy (“non fixed” energy) present in the transition state for dissociation is comparable with that found in solution experiments. In general, only the energetically most favorable decay routes are able to compete. Moreover, information concerning kinetic energy release (T) accompanying unimolecular decomposition may be obtained from a consideration of the metastable peak for the process; these extremely valuable data are inaccessible to solution experiments because of the effects of collisions. The chemistry of ions may therefore be investigated conveniently by generating the ions of interest in a mass spectrometer and analyzing the reactions which occur in metastable transitions.     

Comprehensive multidimensional separation methods by hyphenation of single-photon ionization time-of-flight mass spectrometry (SPI-TOF-MS) with GC and GC×GC

One- and comprehensive two-dimensional gas chromatography were hyphenated with soft photoionization mass spectrometry. The characteristics of these two- and three-dimensional comprehensive separation techniques are discussed in detail. Using the innovative electron beam pumped excimer light source (EBEL) for single-photon ionization (SPI), organic molecules with ionization energies (E _i ) of below 9.8 eV can be detected by a time-of-flight mass spectrometer (TOF-MS). SPI with 126 nm vacuum ultraviolet (VUV) photons enables the universal and soft ionization of organic molecules. SPI-TOF-MS hyphenated to one-dimensional gas chromatography results in a comprehensive two-dimensional separation method (GC×MS). To demonstrate this, diesel fuel was analyzed, and the resulting GC×MS chromatograms are discussed in depth. A three-dimensional separation method was also realized by combining comprehensive two-dimensional gas chromatography (GC×GC) with SPI-MS. In the resulting separation space, constituents originating from mineral oil diesel blended with biodiesel were dispersed along the two GC separation axes, while the molecular mass axis served as a third separation dimension.     

Cross-coupling of E,E-1,4-diiodobuta-1,3-diene with nucleophiles catalyzed by Pd or Ni complexes: a new route to functionalized dienes

E,E-1,4-Diiodobuta-1,3-diene can enter into cross-coupling reactions with carbon- or other element-centered nucleophiles in the presence of Pd or Ni complexes as catalysts. Convenient procedures were developed for the stereoselective synthesis of E,E-1,4-dialkenylbuta-1,3-dienes, dienyl-1,4-bisphosphonates, E,E-1,4-bis(diphenylphosphino)buta-1,3-diene, E,E-1,4-diphenylbuta-1,3-diene, and E,E-1,4-bis(thiophenyl)buta-1,3-diene.     

Advantages of high-resolution and high-mass range magnetic-sector mass spectrometry for electrospray ionization

Electrospray ionization (ESI) mass spectra have been measured on a magnetic-sector double-focusing mass spectrometer for a number of proteins and peptides. It is pointed out how in theory raising the mass resolution of a mass spectrometer from 800–1000 to 2400–3000 significantly increases the precision with which the envelope of isotopic peaks of a protein ion (or other organic ion) can be defined, particularly at higher masses. Better definition of the isotopic envelope ought to lead to higher precision in the experimental determination of molecular mass, which has been demonstrated. It is shown how ESI mass spectra of high-mass molecules are significantly less congested at higher m/z values, so that for these molecules (RMM > 40 000) there is an advantage in being able to record peaks at higher m/z values (m/z > 2000) representing ions with fewer charges. Fragmentation of a small peptide in the ESI source has been found to provide sequence information.     

Temperature‐dependent release of volatile organic compounds of eucalypts by direct analysis in real time (DART) mass spectrometry

A method is described for the rapid identification of biogenic, volatile organic compounds (VOCs) emitted by plants, including the analysis of the temperature dependence of those emissions. Direct analysis in real time (DART) enabled ionization of VOCs from stem and leaf of several eucalyptus species including E. cinerea, E. citriodora, E. nicholii and E. sideroxylon. Plant tissues were placed directly in the gap between the DART ionization source skimmer and the capillary inlet of the time‐of‐flight (TOF) mass spectrometer. Temperature‐dependent emission of VOCs was achieved by adjusting the temperature of the helium gas into the DART ionization source at 50, 100, 200 and 300°C, which enabled direct evaporation of compounds, up to the onset of pyrolysis of plant fibres (i.e. cellulose and lignin). Accurate mass measurements facilitated by TOF mass spectrometry provided elemental compositions for the VOCs. A wide range of compounds was detected from simple organic compounds (i.e. methanol and acetone) to a series of monoterpenes (i.e. pinene, camphene, cymene, eucalyptol) common to many plant species, as well as several less abundant sesquiterpenes and flavonoids (i.e. naringenin, spathulenol, eucalyptin) with antioxidant and antimicrobial properties. The leaf and stem tissues for all four eucalypt species showed similar compounds. The relative abundances of methanol and ethanol were greater in stem wood than in leaf tissue suggesting that DART could be used to investigate the tissue‐specific transport and emissions of VOCs. Copyright © 2009 John Wiley & Sons, Ltd.     

Charge‐derivatized amino acids facilitate model studies on protein side‐chain modifications by matrix‐assisted laser desorption/ionization time‐of‐flight mass spectrometry

The α‐amino groups of histidine and lysine were derivatized with p‐carboxylbenzyltriphenylphosphonium to form the pseudo dipeptides, PHis and PLys, which can be sensitively detected by matrix‐assisted laser desorption/ionization time‐of‐flight mass spectrometry (MALDI‐TOFMS) due to the fixed positive charge of the phosphonium group. Detection limits of PHis and PLys by MALDI‐TOFMS were both 30 fmol with a signal‐to‐noise ratio of 5:1. These pseudo dipeptides were excellent surrogates for His‐ or Lys‐containing peptides in model reactions mimicking proteins with reactive electrophiles, prominently those generated by peroxidation of polyunsaturated fatty acids including 4‐hydroxy‐2(E)‐nonenal (HNE), 4‐oxo‐2(E)‐nonenal (ONE), 2(E)‐octenal, and 2(E)‐heptenal. An air‐saturated solution of linoleic acid (d₀:d₅ = 1:1) was incubated in the presence of Fe(II) and ascorbate with these two pseudo dipeptides, and the reaction products were characterized by MALDI‐TOFMS and liquid chromatography/electrospray ionization mass spectrometry (LC/ESI‐MS). By using PHis and PLys, the previously reported ONE‐derived His‐furan adduct was detected along with evidence for a cyclic α,β‐unsaturated ketone. A dimer formed from ONE was found to react with PHis through Michael addition. Alkenals were found to form two novel adducts with PLys. 2(E)‐Octenoic acid–His Michael adduct and N^ε‐pentanoyllysine were identified as potential protein side‐chain adducts modified by products of linoleic acid peroxidation. In addition, when PHis or PLys and AcHis or BocLys were exposed to the linoleic acid peroxidation, an epoxy‐keto‐ocatadecenoic acid mediated His–His cross‐link was detected, along with the observation of a His–ONE/9,12‐dioxo‐10‐dodecenoic acid–Lys derived pyrrole cross‐link. Copyright © 2009 John Wiley & Sons, Ltd.     

Electron-impact-induced rearrangements of organic ions–II:1 Unimolecular decompositions of some isomeric [C9H10H]+ metastable ions

[C₉H₁₀N]⁺ cations (m/e 132) are generated by electron-impact from structurally distinct compounds within a mass spectrometer. They undergo three metastable fragmentation processes, preceded by isomerisation reactions of the precursor ions. The kinetics and energetics of the unimolecular reactions involved are discussed.     

Online Electrospray Ionization Mass Spectrometric Monitoring of Protease-Catalyzed Reactions in Real Time

Although there are a lot of well established methods for monitoring enzyme-catalyzed reactions, most of them are based on changes in spectroscopic properties during the conversion of substrates to products. However, reactions without optical changes are common, which are inapplicable to these spectroscopic methods. As an alternative technique for enzymologic research, mass spectrometry (MS) is favored due to its specificity, sensitivity, and the ability to obtain stoichiometric information. In this work, probe electrospray ionization (PESI) source coupled with a time of flight mass spectrometer was employed to monitor some typical protease-catalyzed reactions, including pepsinolysis and trypsinolysis of cytochrome c in real time. Due to the high electrical conductivity of each reaction system, corona discharges are likely to occur, which would decrease intensities of mass spectrometric signals. An ultra-fine sampling probe and an auxiliary vapor spray were adopted to prevent corona discharges. Experimental results from peptic and tryptic digestions of cytochrome c showed different and characteristic catalytic pathways. With the data presented in this study, PESI-MS can be considered as a potential tool for real-time monitoring of enzymatic reactions because of its simplicity in instrumental configuration, wide applicability under harsh conditions, and flexibility in combination with other techniques.     

Examination of Ortho effects in the collisionally activated dissociation of closed-shell aromatic ions

The collisionally activated dissociation of a variety of isomeric disubstituted aromatic ions formed by ion–molecule reactions were examined in order to characterize ortho effects in closed-shell systems. Closed-shell ions of methoxyacetophenone, hydroxyacetophenone, methoxyphenol, anisaldehyde and hydroxybenzaldehyde were formed by proton transfer, methyl addition or methyne addition by using dimethyl ether or ethylene oxide as chemical ionization reagents, and then the structures of these adducts were studied by deuterium-labelling methods and by collisionally activated dissociation techniques in a triple quadrupole mass spectrometer or a quadrupole ion trap. Typically, the meta and para isomers have qualitatively similar dissociation spectra which reflect the types of dissociation reactions observed for the corresponding monosubstituted aromatic ions. The predominant dissociation pathways of the [M + H]⁺ and [M + 15]⁺ ions are directed by the electron-withdrawing substituents, whereas the major dissociation pathways of the [M + 13]⁺ ions are related to the electron-releasing substituent. In contrast, the dissociation routes of the corresponding ortho isomers are dramatically different. This is attributed to the opportunity for functional group interactions of the ortho isomers which facilitate alternative pathways.     

The ‘preference factor’ and isotope effect in the loss of hydrogen or deuterium from labeled toluenes

Metastable ion decompositions involving the loss of hydrogen and deuterium from partially deuterated toluene ions were studied using a double focusing mass spectrometer. The electric sector voltage was adjusted so that the only ions transmitted were those which lost a particular fraction of their kinetic energy in decompositions taking place in front of the electric sector. Transitions involving loss of mass 1 or mass 2 from the molecular ions of toluene-α-d₃ and toluene-2,3,4,5,6-d₅ were studied. The results showed that in these slow reactions, the ‘preference factor’ defined as the ratio of the probability of loss of a hydrogen atom from a side-chain position to loss of a hydrogen atom from a ring position was 1.00. The ‘isotope factor,’ defined as the ratio of the probability of loss of a hydrogen atom from any position to that for the loss of a deuterium atom from the same position was found to be 3·50.     

Detection of Fragment Genesis in the Mass Spectrometer: DADI Mass Spectrometry as an Aid in the Structure Analysis of Organic Compounds

“Direct Analysis of Daughter Ions” (DADI) can be carried out with commercial mass spectrometers embodying the Nier-Johnson inverse geometry. DADI measurements permit experimental detection of the consecutive formation of molecule fragments (fragment genesis). Knowledge of fragment genesis enables the chemist to clarify the fragmentation processes of molecule-ions and provides information on the structure of fragments formed in the mass spectrometer. In combination with classical mass spectrometry such information makes it easier to determine the structure of compounds, to analyze mixtures, to determine the sequence in periodically constructed molecules, for example oligopeptides, and to study rearrangement reactions occurring in the mass spectrometer.     

A silicon‐assisted synthesis of (E)‐β‐haloenamides from N‐vinylamides

(E)‐β‐Iodoenamides and (E)‐β‐iodoenimides can be easily obtained from N‐vinyl derivatives (N‐vinylamides and N‐vinylimides) by stereoselective ruthenium‐catalysed silylative coupling with vinyltrimethylsilane (Marciniec coupling) and subsequent stereospecific silicon–iodine exchange. Bromodesilylation of (E)‐β‐silylenimides affords (E)‐β‐bromoenimides, while the analogous reactions involving (E)‐β‐silylenamides lead to decomposition of substrates. N‐Halosuccinimides have been found as the most effective halogenating agents in the desilylation step under mild conditions. The ruthenium‐catalysed silylation/halodesilylation sequence can be performed in a one‐pot procedure. Copyright © 2015 John Wiley & Sons, Ltd.