Identification of ligands that target the HCV-E2 binding site on CD81

Hepatitis C is a global health problem. While many drug companies have active R&D efforts to develop new drugs for treating Hepatitis C virus (HCV), most target the viral enzymes. The HCV glycoprotein E2 has been shown to play an essential role in hepatocyte invasion by binding to CD81 and other cell surface receptors. This paper describes the use of AutoDock to identify ligand binding sites on the large extracellular loop of the open conformation of CD81 and to perform virtual screening runs to identify sets of small molecule ligands predicted to bind to two of these sites. The best sites selected by AutoLigand were located in regions identified by mutational studies to be the site of E2 binding. Thirty-six ligands predicted by AutoDock to bind to these sites were subsequently tested experimentally to determine if they bound to CD81-LEL. Binding assays conducted using surface Plasmon resonance revealed that 26 out of 36 (72 %) of the ligands bound in vitro to the recombinant CD81-LEL protein. Competition experiments performed using dual polarization interferometry showed that one of the ligands predicted to bind to the large cleft between the C and D helices was also effective in blocking E2 binding to CD81-LEL.     

How mobile NMR can help with the conservation of paintings

The conservation of paintings is fundamental to ensure that future generations will have access to the ideas of the grand masters who created these art pieces. Many factors, such as humidity, temperature, light, and pollutants, pose a risk to the conservation of paintings. To help with painting conservation, it is essential to be able to noninvasively study how these factors affect paintings and to develop methods to investigate their effects on painting degradation. Hence, the use of mobile nuclear magnetic resonance (NMR) as a method of investigation of paintings is gaining increased attention in the world of Heritage Science. In this mini-review, we discuss how this method was used to better understand the stratigraphy of paintings and the effect different factors have on the painting integrity, to analyze the different cleaning techniques suitable for painting conservation, and to show how mobile NMR can be used to identify forgeries. It is also important to keep in mind its limitations and build upon this information to optimize it to extend its applicability to the study of paintings and other precious objects of cultural heritage.     

Addition of some α-halo ethers to unsaturated compounds

Summary The addition was carried out of 2-acetoxyethyl chloromethyl ether and of 2-chloroethyl chloromethyl ether to isobutene, to allyl chloride, to styrene, and to allyl acetate and also of 2-acetoxyethyl chloromethyl ether to butadiene and to ethyl cinnamate.     

Highly effective and enantioselective Phospho-Aldol reaction of diphenyl phosphite with N-alkylated isatins catalyzed by quinine

Cinchona alkaloids were first successfully reported to promote enantioselective Phospho-Aldol reaction of diphenyl phosphite to a variety of N-alkylated isatin derivatives in good to excellent yields (up to 99%) and moderate to good enantioselectivities (up to 73% ee) almost in no time.     

Investigation of isothiocyanate addition to alkylidene derivatives of malononitrile and cyanoacetic acid esters

Addition of arylisothiocyanates to active methylene compounds leads to a variety of compounds depending on the structure of the starting material and conditions used to conduct the addition. Addition of arylisothiocyanate to 1c leads to a pyrido[2,3-d]pyrimidine resulting from addition of a second mole of cyanate to the initial adduct. Addition of arylisothiocyanate to 1b led to a mixture of pyridine and thiopyran adducts, while addition to 1a led to open chain structures.     

Static fatigue fracture of polyethylene: A morphological analysis

The fracture properties of a number of high-density polyethylenes were evaluated and related to their morphology. The resistance to initiation of fracture is related to the resistance to voiding of the materials and the rate of coalescence of voids. The propensity of the materials to void has been shown to be related to the size of the amorphous region. The resistance to propagation of the fracture is also related to the above factors as well as the ease of stretching and rupture of fibrils. The ease of fibril formation has been shown to be related to the degree of perfection of the crystallites.     

Adhesion between graphite and modified polyester surfaces: a theoretical study

This study examines the adhesion of graphite to functionalized polyester surfaces using a range of qualitative and quantitative measures of theoretical adhesion. Modifications to the polyester surfaces include the addition of hydroxyl, carboxyl, or fluorine substituents with coverages of 0.4 and 0.9 groups per nm(2). In each case, the introduction of substituents to the surface of the polyester was calculated to lead to reduced adhesion to graphite. Effects of surface relaxation on adhesion are studied by employing different simulation protocols. The theoretical results suggest one mechanism to reduce adhesion to carbonaceous solids is to increase atomic roughness using strongly hydrophilic or alternatively strongly hydrophobic substituents.     

Modification of Cyclodextrins for Use as Artificial Enzymes

The magical powers of enzymes have been attributed to their ability to bind specific substrates and catalyze reactions of the bound substrate. Artificial enzymes synthetically mimic the binding and the catalytic site to produce molecules that are not only smaller in size but also potentially have similar activity to the real enzymes. The main objective of our research is to create artificial redox enzymes by using cyclodextrins as binding sites and attaching flavin derivatives as the catalytic site. We have developed a strategy to attach a catalytic site to cyclodextrin exclusively at the 2-, 3- or the 6-position. The evaluation of the artificial enzyme in which flavin is attached to the 2-position gives a 647-fold acceleration factor. Although this is modest compared to those of real enzymes (which can have acceleration factors of a trillion), the artificial enzymes allow us to understand the elements that contribute to the incredible catalytic power of enzymes.     

Sodium Hypochlorite Reactions. III. The Catalytic Nakagawa and Related Systems

Mainly through the extensive investigations of Nakagawa and coworkers, nickel peroxide has emerged as a powerful oxidant for organic compounds. For example, it has been used for the oxidation of alcohols to aldehydes or carboxylic acids,^2,3 allylic hydroxyl (selectively) to the carbonyl group,⁴ α-ketols to α-diketones,⁵ α-glycols, α-ketols, α-hydroxyl and α-keto acids to cleavage products,⁶ aldehydes to amides or nitriles in the presence of ammonia,⁷ phenols to quinones,^8,9 certain Schiff bases to benzoxazoles,¹⁰ amines to azo compounds or nitriles,^11,12 diarylamines to hydrazines,¹³ carbazoles to dimers and trimers,¹⁴ hydrazones to diazo compounds,^15,16 1-aminobenzotriazole to benzyne,¹⁷ N-substituted hydroxylamines to azoxy compounds,¹⁸ phenylacetonitrile to dimeric products,¹⁹ a thiouracil to a uracil derivative,²⁰ thiols to disulfides and sulfides to sulfones,²¹ N-substituted phenothiazines to sulfoxides and sulfones,²¹ haloforms to hexahaloethanes.²³     

Using one- and two-dimensional NMR techniques to characterize reaction products bound to Chiron SynPhase crowns

Solid-phase MAS techniques have proved to be very useful in characterizing compounds bound to resin; however, little has been reported on using NMR to characterize compounds attached to Chiron SynPhase crowns. We have used proton, carbon, and COSY spectra obtained with a Varian Nano.nmr probe to characterize products from a published reaction sequence attached to MD (methacrylic acid/dimethylacrylamide copolymer) crowns. We have also performed solvent surveys to determine the best solvents for acquiring spectra of materials bound to both MD and PS (polystyrene) crowns.     

Classification of wines from five Spanish origin denominations by aromatic compound analysis

Wine is a complex matrix in which aroma compounds play an important role in the characterization of the flavor pattern of a given wine. Twelve volatile compounds were determined in 244 samples of Spanish red wines from different denominations of origin: Rioja, Navarra, Valdepe?as, La Mancha, and Cari?ena. The samples were analyzed by GC using headspace solid-phase microextraction. The concentration (mg/mL) intervals obtained were 3-methyl-butyl acetate (3.9 to 116), 3-methyl-1-butanol (93 to 724), ethyl hexanoate (0.8 to 39), 1-hexanol (0.3 to 6.7), ethyl octanoate (1.4 to 41), diethyl succinate (0.2 to 13), 2-phenyl ethyl acetate (0 to 5.3), hexanoic acid (0 to 8.3), geraniol (0 to 3.0), 2-phenylethanol (1.5 to 56), octanoic acid (0 to 20), and decanoic acid (0 to 3.3). Wines were classified by multivariate statistical methods: principal component analysis, and lineal discriminant analysis. A correct differentiation among wines according to their origin was obtained by lineal discriminant analysis.     

NMR spectroscopic study of the Murex trunculus dyeing process

It is widely accepted that indigo dyes derived from Murex trunculus were used to produce the biblical dyes tekhelet and argaman. We describe a method of following the debromination of natural leucoindigos and their binding to wool using NMR spectroscopy. Debromination is observed prior to reaction with the wool and prior to oxidation. Binding to the wool is shown to occur prior to oxidation. NMR allows the dyeing process to be followed. This, in principle, could be used to correct problems during dyeing that would increase the reliability of the process.     

Precision of Flash Pyrolysis-GC-MS Analysis: Experimental Evaluation of the Sources of Variability

The present study was carried out to evaluate the precision and to identify significant sources of variability in flash pyrolysis-GC-MS experiments. The analysis of variance has been applied to the example of polyethylene pyrolysis to estimate the impact of several controlled factors: sample handling, flash pyrolysis filament ageing and calibration. It was demonstrated that to get the best precision in experimental results, it is recommended to set the operator to reduce the impact of sample handling procedure and the filament to avoid variability due to changes in filament characteristics. In comparison, filament ageing and filament calibration are shown to influence in a limited extent the experimental results.     

“The Fitness of Their Union”: Travel and Health in the Letters of Humphry and Jane Davy

The letters of Humphry Davy and his circle, to be published shortly, shed new light on his marriage to Jane Apreece. This paper examines the journeys undertaken by the couple, together and separately, with particular attention to the therapeutic benefits they sought from travel. I argue that their increasingly divergent itineraries reflected a growing understanding that Humphry and Jane had different humoral temperaments or constitutions, leading them to seek different climatic conditions to cure their ailments. While Jane’s temperament was classified as melancholic, requiring her to travel to warmer and sunnier climes during the English winter, Humphry’s was believed to be sanguine, meaning he had to avoid excessive heat along with stimulating food and drink. He relied on classical ideas about individuals’ different humoral constitutions, and the therapies appropriate to them, while measuring atmospheric variables to determine the best places to restore his health. The Davys’ letters reveal the beliefs about bodily differences and atmospheric conditions that shaped their therapeutic travels.     

杨石先对农药化学学科的重要贡献及其学术思想

杨石先先生一生献身于我国的教育事业与化学学科的发展,在62年中为我国培养了无数高质量的科教人才。他除了长期担任南开大学校长之外, 还创建了我国大学第一个专职研究所,即元素有机化学研究所。他率先开展了我国元素有机化学与农药化学的科学研究,领导了元素有机化学国家重点实验室的建立,是我国元素有机化学和农药化学的奠基人和开拓者。他倡导用有机化学的专业知识,科学和系统地开展农药化学研究,组建队伍获得20项科研成果,发表上百篇科学与论述性论文,为我国开展自主创新农药研究事业作出重要贡献。在农药化学学科的学术思想中,他强调要弄清该学科的交叉性、系统性和内在规律性,倡导要学习国际先进经验,要结合国情自主创新,要为国家经济服务,要对世界农药科技做出贡献。他毕生对人才培养给予了特别的重视,为我国科技事业持续发展作出了重大贡献。     

Characterization of Langmuir-Blodgett film using differential charging in X-ray photoelectron spectroscopy

Differential charging is often regarded as a problem in X-ray photoelectron spectroscopy (XPS) studies, especially for insulating or partially conducting samples. Neutralization techniques have been developed to circumvent this effect. Instead of neutralizing the positive charge, which is often the technique to obtain good quality data, it is possible to exploit this phenomenon to get useful information about the sample. An attempt is made here to use this differential charging to study the mono- and multilayer Langmuir-Blodgett (LB) films of cadmium arachidate on silicon substrate. The surface potential was probed by measuring XPS line shift with respect to their neutral position and was found to have correlation with the thickness of the films. No differential charging was observed in the monolayer LB film where there was only one layer of cadmium headgroup. Significant differential charging was observed for multilayer films, the total charging as well as the differential charging in these films increase with increasing number of layers. Angle-resolved XPS measurements were performed to obtain additional information about the structure of the films. Charging of the upper layer of the films close to the vacuum interface was found to be less compared to that of the interior. The discrete cadmium layers were found to be more differentially charged compared to the continuous hydrocarbon stacks in the multilayer LB films. Charging of the discrete cadmium layers has been utilized to obtain quantitative information of the multilayer LB films.     

Designing for sustainability with biocatalytic and chemoenzymatic cascade processes

Cascade reactions have been widely recognized to cut costs, decrease solvent usage, and reduce cycle times in chemical processes. Recently, biocatalytic cascades have altered how we design synthetic routes to complex molecules to achieve sustainable commercial processes for pharmaceutical, agricultural, and fine chemical industries. With advancements in protein engineering and an increase in the number of enzyme classes available to chemists, industrial and academic groups alike have endeavored to expand the scope of biocatalysis from single reactions to multi-enzyme cascades to rapidly build complex molecular structures. Recent reports have drawn inspiration from biosynthetic pathways and have applied engineered enzymes to in vitro enzymatic cascades. Furthermore, combining transition-metal catalysis and enzymes in one-pot chemoenzymatic cascades likewise serves to broaden the scope of biocatalysis, enabling traditional chemical reactions to be performed under mild aqueous conditions. In this article, we review recent biocatalytic and chemoenzymatic cascades from 2019 to 2021.     

Quantification of particle-bubble interactions using atomic force microscopy: A review

The attachment of particles to bubbles in solution is of fundamental importance to several industrial processes, most notably in the process of froth flotation. During this process hydrophobic particles attach to air bubbles in solution, which allows them to be separated as froth at the surface. The addition of chemicals can help to modulate these interactions to increase the yield of the minerals of interest. Over the past decade the atomic force microscope (AFM) has been adapted for use in studying the forces involved in the attachment of single particles to bubbles in the laboratory. This allows the measurement of actual DLVO (Derjaguin, Landau, Vervey and Overbeek) forces and adhesive contacts to be measured under different conditions. In addition contact angles may be calculated from features of force versus distance curves. It is the purpose of this article to illustrate how the colloid probe technique can be used to make single particle-bubble interactions and to summarise the current literature describing such experiments.     

中职本科贯通应用型人才培养的无机化学教学探索

中职本科贯通生的中职阶段学习与普通高中学习存在着较大的区别,由于对基础知识未进行过系统强化训练,中职学生的理论知识较为薄弱;但由于较早进相关工厂见习或顶岗操作,其形象思维能力较强。在无机化学教学中,根据中职本科贯通生的特点,多采取探究式教学,让学生根据工厂生产中遇到的情况用自己的语言来描述一些概念和定义,"发现"一些原理,有利于培养应用型人才。     

A second-order perturbation theory route to vibrational averages and transition properties of molecules: general formulation and application to infrared and vibrational circular dichroism spectroscopies

A general formulation to compute anharmonic vibrational averages and transition properties at the second-order of perturbation theory is derived from the Rayleigh-Schro?dinger development. This approach is intended to be applicable to any property expanded as a Taylor series up to the third order with respect to normal coordinates or their associated momenta. The equations are straightforward to implement and can be easily adapted to various properties, as illustrated for the case of electric and magnetic dipole moments. From those, infrared and vibrational circular dichroism spectra can be readily obtained. This fully automatic procedure has been applied to several chiral molecules of small-to-medium sizes and compared to the standard double harmonic approximation and to experimental data.