Calculations of derivatives of porphin and porphyrazine with an annulated five-membered heteroaromatic ring using a modified INDO method

Quantum-chemical calculations for series of porphin (H₂P) and porphyrazine (H₂PA) derivatives whose molecules contain a 3,4-annulated five-membered heteroaromatic ring of pyrrole, furan, and thiophene as well as 1,2,5-triazole, 1,2,5-oxadiazole, and 1,2,5-thiadiazole have been carried out by the AM1 and INDO/Sm methods (m means “modified parametrization”). As follows from the unrestricted Hartree-Fock AM1 calculations, the ground state energy of the a isomer is lower than that of the b isomers for all compounds, the a and b isomers being NH isomers with the additional five-membered ring fused to a pyrrolenine or pyrrole ring, respectively. Condensation of the five-membered ring for the b isomers of the H₂P derivatives is shown to extend the main conjugation path from 18-membered to 21-membered cyclopolyene. However, the 18-membered cyclopolyene for the a isomers of the H₂P derivatives and 16-membered cyclopolyene for both isomers of the H₂PA derivatives prove to be isolated from the five-membered ring carrying six π-electrons. Based on INDO/Sm computations of electronic absorption spectra of the H₂P and H₂PA derivatives, it is shown that the Q_x level of the a isomers is sensitive to the nature of the annulated ring whereas the Q_y level is practically not shifted. On the contrary, the Q_x level of the b isomers is relatively insensitive to the nature of the annulated ring while the Q_y level decreases monotonously in the H₂P and H₂PA series, being the first excited state level for the majority of the derivatives (X is along the NH-HN axis; Y, perpendicular to it). The electronic absorption spectra at the border of the visible and near-UV regions are determined mainly by two high-intensity G → B_x and G → B_y transitions for the H₂P derivatives. However, four intense G → B_x, G → B_y, G → N_x, and G → N_y transitions are characteristic of the spectra of the H₂PA derivatives. Translated from Zhurnal Prikladnoi Spektroskopii, Vol. 75, No. 5, pp. 606–622, September–October, 2008.     

Calculation of the electronic structure and spectra for bacteriochlorophyll analogs

Geometric structures and excited electronic states for free bases of bacteriochlorin (H₂BC) and tetraazabacteriochlorin (H₂TABC) as well as for their magnesium complexes (MgBC and MgTABC), analogs of bacteriopheophytin a (H₂BPhea) and bacteriochlorophyll a (MgBPhea), have been calculated by a DFT method and by an INDO/Sm method (the INDO/S method with parameterization modified by the authors), respectively. The factors responsible for the observed bathochromic shift of the long-wavelength Q _x (0–0) band of MgBPhea relative to H₂BPhea, \updelta E_Qx @ - 300  \textc\textm ^{- 1} {{\updelta }}{E_{{Q_x}}} \cong - 300\;{\text{c}}{{\text{m}}^{ - 1}} , have been clarified. Contributions of one- and two-electron interactions to the resulting shift of the Q _x (0–0) band have been analyzed in detail for the H₂BC/MgBC, H₂TABC/MgTABC, and porphine (H₂P)/Mg porphine (MgP) pairs. It is shown that the bathochromic shift under consideration for the tetrahydro derivatives is caused by a decrease of the orbital energy gap ε₁–ε₋₁ between the lowest unoccupied and highest occupied molecular orbitals. The variation of δ(ε₁–ε₋₁) is large and amounts to –1660 and –920 cm^–1 for the H₂BC/MgBC and H₂TABC/MgTABC pairs, respectively. The two-electron contributions, both into the energy of electronic configurations and due to the superposition of the configurations, produce a compensating hypsochromic effect such that the shifts \updelta E_Qx {{\updelta }}{E_{{Q_x}}} are –260 and –150 cm^–1 for the H₂BC/MgBC and H₂TABC/MgTABC pairs, respectively. It is also shown that the calculated electronic spectra for the considered molecules agree quantitatively with the experimental absorption spectra.     

Modification of the optical spectra of mixed K2CoxNi1–x(SO4)2?6H2O crystals

We propose a new method for obtaining K₂Co _x Ni_1–x (SO₄)₂⋅6H₂O (x = 0, 0.4, 0.8, 1) crystals, involving the use of the chlorides (CoCl₂⋅6H₂O and NiCl₂⋅6H₂O) in an aqueous solution instead of the widely used sulfates. We have studied the transmission spectra of the grown single crystals in the range λ = 200–900 nm and the IR reflectance spectra in the 2.5–20 μm region. We have observed a change in the position and intensity of the absorption bands as a function of the composition of the crystals. Based on the Tanabe–Sugano diagrams, we determined the crystal field splitting (D_q) and its dependence on the nickel concentration. Translated from Zhurnal Prikladnoi Spektroskopii, Vol. 76, No. 1, pp. 126–130, January–February, 2009.     

Electronic structure and spectra of NH-isomers of isobacteriochlorin

Using the restricted and unrestricted Hartree-Fock method (RHF and UHF) with the AM1 Hamiltonian, we have calculated the geometric structure of the NH-isomers of isobacteriochlorin and its meso-cyano derivative. We have used the CNDO/S method for all the considered structures to calculate the transitions to excited electronic states. We have analyzed the effect of taking into account electron correlation on the results of the calculations of the chemical and geometric structure and the electronic spectra. For the a isomer with the imino hydrogens opposite each other, we obtained a planar structure corresponding to literature x-ray diffraction data. For the aromatic c isomer and other isomers with the imino hydrogens adjacent to each other, the calculations lead to a substantial nonplanarity of the macrocycle (defined mainly by the tilt of the pyrrole rings) and also deviation of the NH bond from the plane of the pyrrole ring. The ground-state energies of the a and c isomers have close values, which generally explains the observed NH tautomerism. We calculated the dipole moments of the isomers in the ground state and the excited state. The results of the calculation of the characteristics of the excited states with UHF geometry on the whole seem to be preferred over those with RHF geometry. We show that only for the aromatic c isomer can we describe the electronic absorption spectrum within a four-orbital model. __________ Translated from Zhurnal Prikladnoi Spektroskopii, Vol. 73, No. 2, pp. 232–245, March–April, 2006.     

Molecular structure of trimethyl[(3-indole)ethoxy]silane cooled in a supersonic jet

Conformations of He-jet-cooled trimethyl[(3-indole)ethoxy]silane (TIES) have been studied using a laser spectroscopy technique in combination with quantum-chemical computations. Six probable conformers of the molecule were computed, of which only two conformations were observed. Based on an analysis of fluorescence excitation spectra, fluorescence spectra, shapes of rotational band contours at the electronic S₀–S₁ transition of TIES, and theoretical computations, the above conformers were assigned to steric structures. Twisted structures have the lowest energy due to intramolecular hydrogen bonds C - H ?O < _C^Si C - H \cdots O <_C^{Si} between hydrogen atoms of methyl groups and an oxygen atom and C–H···π between H and the π-electron cloud of the indole ring.     

A facile and one pot synthesis of 1,4-disubstituted-1H-1,2,3-triazoles from terminal alkynes and phenacyl azides prepared from styrenes by CAN oxidant and sodium azide

A facile and green synthesis of 1,4-disubstituted-1H-1,2,3-triazoles is reported. The reaction of α-azido ketones and terminal alkynes in the presence of [CuSO₄ (H₂O)₅/sodium ascorbate] in a mixture of H₂O/polyethylene glycol 400 as solvent afforded the corresponding 1,4-disubstituted triazoles at ambient temperature with short reaction times and at high yields. The corresponding α-azido ketones were directly prepared in situ from various substituted styrenes using the oxidant cerium ammonium nitrate and sodium azide in oxygen-saturated methanol.     

Conformational analysis of 2,3-dihydro-3-O-(1,4-naphthoquinon-2-yl)-2-oxo-1,4-naphthoquinone derivatives by the density functional method and IR spectroscopy

We have used the PBE/3z, B3LYP/6-31G, B3LYP/6-31G(d), and B3LYP/6-311G(d) methods to study the conformational mobility of 2,3-dihydro-3-O-(1,4-naphthoquinon-2-yl)-2-oxo-1,4-naphthoquinones (1–4). We have shown that more than 99% of these compounds exist as the major tautomeric form, while differences in the structure of the Q_2H (2,3-dihydro-2-oxo-1,4-naphthoquinones) and Q_1,4 (1,4-naphthoquinon-2-yl) moieties lead to qualitative differences in the internal rotation potentials of the ethyl substituents V(θ_Et−1) and V(θ_Et−2), and consequently each of compounds 1−4 exists as six different rotameric forms. For diquinone 3, we have calculated the dependences of the frequencies (ν) and intensities (A) of the normal vibrations on the torsional angles θ_Et−1 and θ_Et−2, and also on the changes in the geometry of the ether bond. We have found that the values of ν and A for the bands in the carbonyl region of the IR spectrum change little on going from one rotameric form to another, and also for the in-plane bends of the ether bond, and change considerably for the out-of-plane bends of the ether bond. However, for T ≤ 300 K, there is no qualitative change in the overall contour, and it can be interpreted based on a simple additive model. __________ Translated from Zhurnal Prikladnoi Spektroskopii, Vol. 73, No. 5, pp. 573–581, September–October, 2006.     

Crystal structure of ethyl (2Z)-2-(3-methoxy-4-acetyloxy benzylidene)-7-methyl-3-oxo-5-phenyl-2,3-dihydro-5H-[1,3]thiazolo[3,2-a]pyrimidine-6-carboxylate

The title compound, C₂₆H₂₄N₂O₆S, (I), crystallizes in the monoclinic space group, P2₁/c, with cell parameters a = 16.248(1), b = 7.927(1), c = 19.371(4) ?, β = 105.295(2)°, Z = 4. The central pyrimidine ring in the compound (I) is significantly puckered, assuming a screw-boat conformation. The C11–C16 benzene ring stands vertical while thiazole and C18–C23 benzene rings are coplanar to the mean plane of pyrimidine ring having dihedral angles of 87.48(12), 3.63(11) and 0.94(12)°, respectively. In the absence of potential hydrogen bonding interaction, the crystal packing is influenced by intramolecular C-H…S interaction and intermolecular C-H…π interactions.     

Synthesis and palladium-catalysed isomerisation of fused polycyclic tetrahydrofurans: efficient and stereoselective one-pot domino construction of functionalised bridged bicyclo[n.2.1] ring systems

A new one-pot domino reaction for a general entry to functionalised bridged bicyclo[n.2.1] ring systems from α ,α’-diactivated cyclic ketones and trans-1,4-dihalides is described. The sequence combines a base promoted C–O cycloalkylation reaction leading to fused polycyclic enol ethers and their in situ palladium-catalysed isomerisation.     

Conversion of ortho-para H2O isomers in water and a jump in erythrocyte fluidity through a microcapillary at a temperature of 36.6±0.3°C

A mechanism is proposed for the previously observed [1] jump in erythrocyte fluidity through a microcapillary 1.3 μm in diameter at a temperature of 36.6±0.3°C. Our interpretation is based on the experimental evidence both for existence of ortho and para H₂O isomers in water and on spin-selective interaction of proteins with para H₂O isomers as hydration shells of biomolecules are being formed [2]. It is important that the formation of hydration shells of proteins and DNA in aqueous solutions is accompanied by an increase in the Brillouin shift to 0.4 cm⁻1 (≃0.25 cm⁻¹ in water), which points to the formation of icelike structures. We believe that the coincidence of the translational energy kT of the Brownian motion and the energy of the rotational quanta for the 3₁₃–2₀₂ transition of para H₂O isomers at the temperature 36.6°C increases the probability for excitation of para H₂O isomers in collisions. Collisions mix quantum states of closely spaced levels in para H₂O (3₁₃, 285.2 cm⁻¹) and ortho H₂O (3₃₀, 285.4 cm⁻¹) and induce conversion of para isomers to ortho H₂O. It is assumed that this conversion in the icelike hydration shell of hemoglobin (Hb) is accelerated under the catalyzing effect of oxygen and iron present in Hb and triggers a chain reaction: release of ortho H₂O isomers through the erythrocyte membrane→compaction of Hb molecules and increase in concentration of catalysts→acceleration of conversion→structural gel-sol transition. It is the sequence of these processes that provides a jump in fluidity of erythrocytes through a microcapillary and the anomalous increase in fluidity of the aqueous solution of hemoglobin by almost an order of magnitude at temperatures close to 36.6°C and an increase in the solution concentration by a factor of 1.7.     

Calculation of frequencies of normal vibrations and interpretation of IR spectra for 2,3-dihydro-3-O-(1,4-naphthoquinon-2-yl)-2-oxo-1,4-naphthoquinone derivatives

We have used B3LYP/6-31(d) density functional theory to calculate the frequencies and modes of the normal vibrations of 2-oxo-2,3-dihydro-and 2-methoxy-1,4-naphthoquinones. Based on these calculations within an additive model, we have assigned the carbonyl bands in the IR spectra of 2,3-dihydro-3-O-(1,4-naphthoquinon-2-yl)-2-oxo-1,4-naphthoquinones (diquinones 1–4). We have carried out a direct calculation of the vibrational spectra for diquinones 1–4 using PBE and B3LYP correlation functionals. We have shown that the calculation of the vibrational spectra of the diquinones based on an additive model on the whole is quite consistent with the results of direct calculations and the experimental spectra. __________ Translated from Zhurnal Prikladnoi Spektroskopii, Vol. 73, No. 6, pp. 713–720, November–December, 2006.     

Einstein<Emphasis Type="Italic">A</Emphasis>-coefficients for rotational transitions in the ring-chain isomer of C<Subscript>5</Subscript>H<Subscript>2</Subscript>

Laboratory formation of four isomers of C⁵H² molecule is reported and detection of the ring-chain isomer (isomer 1) of C₅H₂ in cosmic objects has been suggested. For identification of a molecule in cosmic objects, one of the required input data is EinsteinA-coefficients (radiative transition probabilities) for the molecule. Here, we report EinsteinA-coefficients for electric dipole transitions in the ring-chain isomer of C₅H₂ among the rotational levels of the ground electronic and ground vibrational states up to 21 cm⁻¹.     

Spectral-luminescence properties of a norbornene-substituted tetraazachlorin and its metal complexes

The spectral-luminescence properties of a tetraazachlorin derivative with a norbornene fragment annelated to a reduced pyrrole ring and its complexes with zinc and palladium have been studied at 293 and 77 K. For the norbornene-substituted free base, differences in fluorescence from unsubstituted tetraazachlroin and its dibenzobarrelene-substituted analog are found. The fluorescence lifetime is observed to rise by ∼7 times for the free base and by ∼1.6 ties for the Zn complex on going from 293 to 77 K. An essential dependence of the photophysical parameters on the nature of the solvent is noted. The fluorescence polarization spectrum of the norbornene-substituted tetraazachlorin reveals in the Soret band region at least four electronic transitions. For the Pd complex, weak phosphorescence in the near IR region has been detected; the 0–0 band maximum is at 990 nm and the singlet–triplet interval amounts to 5800 cm^–1, which is larger by 400 cm^–1 than for Pd tetraazaporphine. The quantum yields of the photosensitized formation of singlet oxygen have been determined using a relative luminescence method.     

Intramolecular interactions in antiviral derivatives of 4,6-di-<Emphasis Type="Italic">tert</Emphasis>-butyl-2-aminophenol

We have used Fourier transform IR (FTIR) spectroscopy to study intramolecular interactions in solutions of 4,6-di-tert-butyl-2-aminophenol in n-hexane. When the hydroxyl group in the molecule is ortho to the amino group, an O―H⋅⋅⋅N intramolecular hydrogen bond is formed in the 4-6-di-tert-butyl-2-aminophenol derivatives, where the strength of the hydrogen bond depends on the type of substituent at the para position of the phenyl ring. If there are electron-donor groups on the phenyl ring, then a stronger O―H⋅⋅⋅N bond is formed in the 4,6-di-tert-butyl-2-aminophenol derivatives than in molecules containing electron-acceptor Cl and Br atoms. Formation of the above-indicated intramolecular hydrogen bond affects the course of radiation-induced reactions occurring in n-hexane with participation of these compounds and also affects their antiviral activity. Translated from Zhurnal Prikladnoi Spektroskopii, Vol. 76, No. 3, pp. 434–439, May–June, 2009.     

Electron ionization mass spectrometric study of isomeric cyclohexyl-N-phenylanilines

Electron ionization mass spectra of N-, 2-, 3-, and 4-cyclohexyl-N-phenylaniline isomers have been obtained and investigated. Molecular ions of the 2–4 isomers are the base peaks demonstrating their high stability relative to the N-isomer in which the molecular ion intensity is about 76%. The characteristic primary fragmentation pattern for each isomer is proposed and discussed. Further fragmentations of some of the primary fragment ions is also discussed.     

Structure and dynamics of cationic van-der-Waals clusters

Ar_nHCl⁺ van-der-Waals clusters for n = 1–13 are investigated with the “minimal diatomics-in-molecules (DIM) model” using ab-initio input data obtained from multi-reference configuration-interaction calculations plus subsequent projection onto valence-bond wavefunctions. The results for the complexes with n = 1–3 are checked against ab-initio calculations at the coupled-cluster (CCSD) level with the same one-electron atomic basis set as for the input data generation (aug-cc-pVTZ from Dunning). In addition to the electronic ground state, the first excited ²A^￠^2\!A^{\prime} state for the triatomic complex (n = 1) is also studied. The results from the DIM model are shown to be in fair agreement with those from advanced conventional ab-initio calculations, although there are differences in detail. The comparison justifies the extension of the DIM approach to n > 3. Systematic analysis of the local minima of the multi-dimensional potential-energy surfaces (PESs), carried out with the combined method described in part I (Monte-Carlo sampling plus subsequent steepest-descent optimization), reveals simple building-up regularities for the most stable structures (i.e. those corresponding to the global PES minimum) at each n: apart from always having a nearly linear (Ar–H–Cl)⁺ fragment as core, the aggregates show little or no symmetry. Secondary local minima are also determined and their structures interpreted. The PESs for the low-lying excited states reveal a much more complicated topography compared to the Ar_nH⁺ clusters allowing a variety of photo-processes. The energy level sequence of the first five excited electronic states and the stability of the clusters in these states is studied as a function of the cluster size n.     

(H2O)6的稳定结构及异构过程研究

(H₂O)₆是形成三维立体结构的最小水分子团簇并具有能量较低的多个稳定异构体.本文利用从头计算方法研究了各稳定结构的异构化过程.(H₂O)₆的环状结构与最稳定结构的能量差0.31 eV为一个氢键的键能.水分子团簇的异构化是分子间氢键打开或重组的过程,不同异构体之间的转化每次只涉及一个氢键的打开或重组,异构化的能垒高度在0.07—0.21 eV之间. 关键词： 水分子团簇 2O)₆')" href="#">(H₂O)₆ 异构化过程 从头计算     

X-ray photoelectron spectroscopy study of the electronic structure of La<Subscript>1–<Emphasis Type="Italic">x</Emphasis></Subscript>Ca<Subscript><Emphasis Type="Italic">x</Emphasis></Subscript>MnO<Subscript>3+δ</Subscript> solid solutions

The electronic structure of La_1–x Ga _x MnO_3+δ. solid solutions is studied by X-ray photoelectron spectroscopy (XPS). The valence state of the manganese is estimated by various methods: by analyzing the difference in the binding energies of the Mn2p_3/2 and O1s electronic levels, analyzing exchange splitting in the spectrum of Mn3s, and from the dependence of the binding energy of the XPS spectrum of Mn2p_3/2 on the calcium concentration. The state of oxidation of the manganese in the compositions containing calcium lies between Mn³⁺ and Mn⁴⁺. The efficacies of these methods are compared. A correlation is found between the type of crystalline structure of La_1–x Ga _x MnO_3+δ. (0 ≤ x < 1) and the binding energy of the Mn2p_3/2 peak. Translated from Zhurnal Prikladnoi Spektroskopii, Vol. 76, No. 3, pp. 419–427, May–June, 2009.     

Gas-phase photoreactions of anthracene, 2-aminoanthracene,and pyrene with oxygen and water vapors

Excited singlet (S ₁) and triplet (T ₁) state quenching by O₂ and by (O₂ + H₂O) gas-vapor mixtures was studied in the gas phase for polycyclic aromatic hydrocarbons (PAHs, anthracene, 2-aminoanthracene, pyrene). Addition of water vapor is shown not to influence quenching of both fluorescence and delayed fluorescence of PAHs by oxygen. The role of complexes stabilized by charge transfer and hydrogen bonds in quenching the excited states of PAHs by atmospheric gases was analyzed. Translated from Zhurnal Prikladnoi Spektroskopii, Vol. 76, No. 3, pp. 342–348, May–June, 2009.     

Conformational Analysis of (S)-4,5,6,7-Tetrahydro-5-Methylimidazo [4,5,1-jk][1,4]-Benzodiazepin-2(1H)-one (R78362)

The solution and solid state conformation of (S)-4,5,6,7-tetrahydro-5-methylimidazo [4,5,1-jk][1,4]-benzodiazepin-2(1H)-one (R78362) have been investigated by low temperature NMR and x-ray diffraction studies. The ¹H NMR spectrum of R78362 shows no evidence of the presence of multiple conformers in the temperature range 340K - 177K. Molecular mechanisms and semiempirical molecular orbital calculations suggest that the nitrogen and ring inversion barriers of R78362 are small and thus a time-averaged ¹H NMR spectrum is probably occurring at 298K. The x-ray diffraction data indicated that there were two independent molecules in the asymmetric unit of the crystal. The two molecules had similar conformations with the benzoimidazole ring being planar and the diazepine ring in a “half-chair” conformation.