Synthesis and two‐photon absorption properties of conjugated polymers with N‐arylpyrrole as conjugated bridge and isolation moieties

Three novel conjugated polymers with N‐arylpyrrole as the conjugated bridge were designed and synthesized, which emitted strong one‐ or two‐photon excitation fluorescence in dilute tetrahydrofuran (THF) solution with high quantum yields. The maximal two‐photon absorption (TPA) cross‐sections of the polymers, measured by the two‐photon‐induced fluorescence method using femtosecond laser pulses in THF, were 752, 1114, and 1869 GM, respectively, indicating that the insertion of electron‐donating or electron‐withdrawing moieties into the polymer backbone could benefit to the increase of the TPA cross‐section. Their large TPA cross‐sections, coupled with the relatively high emission quantum yields, made these conjugated polymers attractive for practical applications, especially two‐photon excited fluorescence. © 2011 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2011     

Trypsin and MALDI matrix pre‐coated targets simplify sample preparation for mapping proteomic distributions within biological tissues by imaging mass spectrometry

Prefabricated surfaces containing α‐cyano‐4‐hydroxycinnamic acid and trypsin have been developed to facilitate enzymatic digestion of endogenous tissue proteins prior to matrix‐assisted laser desorption/ionization (MALDI) imaging mass spectrometry (IMS). Tissue sections are placed onto slides that were previously coated with α‐cyano‐4‐hydroxycinnamic acid and trypsin. After incubation to promote enzymatic digestion, the tissue is analyzed by MALDI IMS to determine the spatial distribution of the tryptic fragments. The peptides detected in the MALDI IMS dataset were identified by Liquid chromatography‐tandem mass spectrometry/mass spectrometry. Protein identification was further confirmed by correlating the localization of unique tryptic fragments originating from common parent proteins. Using this procedure, proteins with molecular weights as large as 300 kDa were identified and their distributions were imaged in sections of rat brain. In particular, large proteins such as myristoylated alanine‐rich C‐kinase substrate (29.8 kDa) and spectrin alpha chain, non‐erythrocytic 1 (284 kDa) were detected that are not observed without trypsin. The pre‐coated targets simplify workflow and increase sample throughput by decreasing the sample preparation time. Further, the approach allows imaging at higher spatial resolution compared with robotic spotters that apply one drop at a time. Copyright © 2016 John Wiley & Sons, Ltd.     

Monitoring time‐dependent degradation of phospholipids in sectioned tissues by MALDI imaging mass spectrometry

Imaging mass spectrometry (IMS) is useful for visualizing the localization of phospholipids on biological tissue surfaces creating great opportunities for IMS in lipidomic investigations. With advancements in IMS of lipids, there is a demand for large‐scale tissue studies necessitating stable, efficient and well‐defined sample handling procedures. Our work within this article shows the effects of different storage conditions on the phospholipid composition of sectioned tissues from mouse organs. We have taken serial sections from mouse brain, kidney and liver thaw mounted unto ITO‐coated glass slides and stored them under various conditions later analyzing them at fixed time points. A global decrease in phospholipid signal intensity is shown to occur and to be a function of time and temperature. Contrary to the global decrease, oxidized phospholipid and lysophospholipid species are found to increase within 2 h and 24 h, respectively, when mounted sections are kept at ambient room conditions. Imaging experiments reveal that degradation products increase globally across the tissue. Degradation is shown to be inhibited by cold temperatures, with sample integrity maintained up to a week after storage in ?80 °C freezer under N₂ atmosphere. Overall, the results demonstrate a timeline of the effects of lipid degradation specific to sectioned tissues and provide several lipid species which can serve as markers of degradation. Importantly, the timeline demonstrates oxidative sample degradation begins appearing within the normal timescale of IMS sample preparation of lipids (i.e. 1–2 h) and that long‐term degradation is global. Taken together, these results strengthen the notion that standardized procedures are required for phospholipid IMS of large sample sets, or in studies where many serial sections are prepared together but analyzed over time such as in 3‐D IMS reconstruction experiments. Copyright © 2014 John Wiley & Sons, Ltd.     

Molecular motion and relaxation studies of aliphatic polyureas by thermal windowing thermally stimulated depolarization current technique

Molecular motion and relaxation studies using a thermal windowing thermally stimulated depolarization current (TW‐TSDC) were performed for aliphatic polyureas 7 and 9. Global thermally stimulated depolarization current gave three characteristic major peaks corresponding to the α, β, and γ relaxation modes at 78.5, −44, and −136°C for polyurea 7 and at 80, −50, and −134°C for polyurea 9, respectively. The α relaxation is related to the large‐scale molecular motion due to micro‐Brownian motion of long‐range segments. This relaxation is significantly related to the glass‐transition temperature. The β relaxation is caused by the local thermal motion of long‐chain segments. The γ relaxation is caused by the limited local motion of hydrocarbon sections. Temperature dependence of relaxation times was expressed well using Vogel–Tammann–Fulcher (VTF) expression. 3‐D simulation of dielectric constants of dielectric strength and loss factor were performed in the frequency range from 10⁻⁶ to 10⁴ Hz and temperature range from −150 to 250°C, using the relaxation parameters obtained from the TW‐TSDC method. © 2000 John Wiley & Sons, Inc. J Polym Sci B: Polym Phys 38: 88–94, 2000     

Synthesis,one‐ and two‐photon properties of poly[9,10‐bis(3,4‐bis(2‐ethylhexyl‐oxy)phenyl)‐2,6‐anthracenevinylene‐alt‐N‐octyl‐3,6‐/2,7‐carbazolevinylene]

The synthesis, one‐ and two‐photon absorption (TPA) and emission properties of two novel 2,6‐anthracenevinylene‐based copolymers, poly[9,10‐bis(3,4‐bis(2‐ethylhexyloxy)phenyl)‐2,6‐anthracenevinylene‐alt‐N‐octyl‐3,6‐carbazolevinyl‐ene] ( P1 ) and poly[9,10‐bis(3,4‐bis(2‐ethylhexyloxy)phenyl)‐2,6‐anthracenevinyl‐ene‐alt‐N‐octyl‐2,7‐carbazolevinylene] ( P2 ) were reported. The as‐synthesized polymers have the number‐average molecular weights of 1.56 × 10⁴ for P1 and 1.85 × 10⁴ g mol^?1 for P2 and are readily soluble in common organic solvents. They emit strong bluish‐green one‐ and two‐photon excitation fluorescence in dilute toluene solution (? _P1 = 0.85, ? _P2 = 0.78, λ_em( P1 ) = 491 nm, λ_em( P2 ) = 483 nm). The maximal TPA cross‐sections of P1 and P2 measured by the two‐photon‐induced fluorescence method using femtosecond laser pulses in toluene are 840 and 490 GM per repeating unit, respectively, which are obviously larger than that (210 GM) of poly[9,10‐bis‐(3,4‐bis(2‐ethylhexyloxy) phenyl)‐2,6‐anthracenevinylene], indicating that the poly(2,6‐anthracenevinylene) derivatives with large TPA cross‐sections can be obtained by inserting electron‐donating moieties into the polymer backbone. © 2009 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 48: 463–470, 2010     

Quantum wave packet calculation of reaction probabilities,cross sections,and rate constants for the C(1D) + HD reaction

The time‐dependent real wave packet method has been used to study the C(¹D) + HD reaction. The state‐to‐state and state‐to‐all reactive scattering probabilities for a broad range of energies are calculated at zero total angular momentum. The probabilities for J > 0 are estimated from accurately computed J = 0 probabilities by using the J‐shifting approximation. The integral cross sections for a large energy range, and thermal rate constants are calculated. © 2005 Wiley Periodicals, Inc. Int J Quantum Chem, 2005     

Charge exchange in C6+ + H (1s) collisions at low energies

The low‐energy single electron capture cross‐sections by C⁶⁺ from H atoms have been evaluated employing the semiclassical, impact parameter, close‐coupling method based on a molecular expansion augmented with the plane‐wave translation factor. Using the method of Bates and Carson, the exact Born–Oppenheimer eigenfunctions and eigenvalues are calculated. Eight‐state coupled equations are solved to obtain transition probabilities and thereby evaluate capture cross‐sections. Our calculated capture cross‐sections agree well with other theoretical and experimental results. At these energies it is found that the capture into the n = 4 manifold of the C⁵⁺ remains the main contributor to the charge exchange process. © 2003 Wiley Periodicals, Inc. Int J Quantum Chem, 2003     

Efficient Coupling of Solar Energy to Catalytic Hydrogenation by Using Well‐Designed Palladium Nanostructures

A Ru³⁺‐mediated synthesis for the unique Pd concave nanostructures, which can directly harvest UV‐to‐visible light for styrene hydrogenation, is described. The catalytic efficiency under 100 mW cm^?2 full‐spectrum irradiation at room temperature turns out to be comparable to that of thermally (70 °C) driven reactions. The yields obtained with other Pd nanocrystals, such as nanocubes and octahedrons, are lower. The nanostructures reported here have sufficient plasmonic cross‐sections for light harvesting in a broad spectral range owing to the reduced shape symmetry, which increases the solution temperature for the reaction by the photothermal effect. They possess a large quantity of atoms at corners and edges where local heat is more efficiently generated, thus providing active sites for the reaction. Taken together, these factors drastically enhance the hydrogenation reaction by light illumination.     

Matrix pre‐coated targets for high throughput MALDI imaging of proteins

We have developed matrix pre‐coated targets for imaging proteins in thin tissue sections by matrix‐assisted laser desorption/ionization mass spectrometry. Gold covered microscope slides were coated with sinapinic acid (SA) in batches in advance and were shown to be stable for over 6 months when kept in the dark. The sample preparation protocol using these SA pre‐coated targets involves treatment with diisopropylethylamine (DIEA)‐H₂O vapor, transforming the matrix layer to a viscous ionic liquid. This SA‐DIEA ionic liquid layer extracts proteins and other analytes from tissue sections that are thaw mounted to this target. DIEA is removed by the immersion of the target into diluted acetic acid, allowing SA to co‐crystallize with extracted analytes directly on the target. Ion images (3–70 kDa) of sections of mouse brain and rat kidney at spatial resolution down to 10 µm were obtained. Use of pre‐coated slides greatly reduces sample preparation time for matrix‐assisted laser desorption/ionization imaging while providing high throughput, low cost and high spatial resolution images. Copyright © 2014 John Wiley & Sons, Ltd.     

A Diradical Approach towards BODIPY‐Based Dyes with Intense Near‐Infrared Absorption around λ=1100 nm

A diradical approach to obtain stable organic dyes with intense absorption around λ=1100 nm is reported. The para‐ and meta‐quinodimethane‐bridged BODIPY dimers BD‐1 and BD‐2 were synthesized and were found to have a small amount of diradical character. These molecules exhibited very intense absorption at λ=1088 nm (?=6.65×10⁵ M ^?1 cm^?1) and 1136 nm (?=6.44×10⁵ M ^?1 cm^?1), respectively, together with large two‐photon‐absorption cross‐sections. Structural isomerization induced little variation in their diradical character but distinctive differences in their physical properties. Moreover, the compounds showed a selective fluorescence turn‐on response in the presence of the hydroxyl radical but not with other reactive oxygen species.     

Depopulation of low‐Rydberg Na atom in collisions with rare gases: A molecular‐state treatment

Total quenching of the low‐Rydberg state of Na in collision with thermal Ne and Ar was investigated, for the first time, employing a molecular approach in the impact parameter formalism. A large basis set of Slater‐type orbitals was used to calculate the molecular structure of the transient quasimolecule formed during the collision; pseudopotentials were used to incorporate the effective binding of the distant electron. A 14‐channel calculation was carried out to evaluate the total depopulation cross sections for Na(9s) colliding with the ground‐state Ne and Ar atoms in the thermal‐energy region. The two colliding pairs not only differ from each other, but also show wide variations from the previously studied Na He pair, in terms of details of the collision dynamics. In the case of the Na Ar system, a unique feature that leads to appreciably larger quenching cross sections shows qualitative agreement with the measurement. A comparative study of three (He/Ne/Ar Na) colliding pairs reveals that the simplified approach like the free‐electron model or the impulse approximation fails to provide details of such state‐changing reactions. ©1999 John Wiley & Sons, Inc. Int J Quant Chem 73: 307–316, 1999     

Use of ion mobility mass spectrometry and a collision cross‐section algorithm to study an organometallic ruthenium anticancer complex and its adducts with a DNA oligonucleotide

We report the development of an enhanced algorithm for the calculation of collision cross‐sections in combination with Travelling‐Wave ion mobility mass spectrometry technology and its optimisation and evaluation through the analysis of an organoruthenium anticancer complex [(η⁶‐biphenyl)Ru^II(en)Cl]⁺. Excellent agreement was obtained between the experimentally determined and theoretically determined collision cross‐sections of the complex and its major product ion formed via collision‐induced dissociation. Collision cross‐sections were also experimentally determined for adducts of this ruthenium complex with the single‐stranded oligonucleotide hexamer d(CACGTG). Ion mobility tandem mass spectrometry measurements have allowed the binding sites for ruthenium on the oligonucleotide to be determined. Copyright © 2009 John Wiley & Sons, Ltd.     

Annealing behavior of the novel morphology of poly(butylene succinate) lath‐shaped single crystals

Lamellar single crystals of poly(butylene succinate) (PBS) with novel morphologies were prepared from a chloroform/methanol solution by self‐seeding methods. Crystal structures and morphologies were investigated by means of atomic force microscopy (AFM). Lath‐shaped crystal and hexagonal‐shaped crystals coexist in one PBS single crystal and this has a lamellar thickness of around 5–6 nm as determined by AFM. The thickening of lamellae from 5–6 to 7–9 nm occurred during heating from 41 to 84 °C. In situ temperature‐controlled AFM observations demonstrated that the lath‐shaped crystal sections melted first and then the hexagonal sections while the edge of the single crystals remained regular during annealing. © 2009 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 47: 1492–1496, 2009     

Real wave packet and flux analysis studies of the H + F2 → HF + F reaction

The H + F₂ → HF + F reaction on ground state potential energy surface is investigated using the quantum mechanical real wave packet and Flux analysis method based on centrifugal sudden approximation. The initial state selected reaction probabilities for total angular momentum J = 0 have been calculated by both methods while the probabilities for J > 0 have been calculated by Flux analysis method. The initial state selected reaction probabilities, integral cross sections and rate coefficients have been calculated for a broad range of collision energy. The results show a large rotational enhancement of the reaction probability. Some resonances were seen in the state‐to‐state reaction probabilities while state‐to‐all reaction probabilities and the reaction cross section do not manifest any oscillations and the initial state selected reaction rate constants are sensitive to the temperature. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2012     

Direct Time‐Domain Observation of Conformational Relaxation in Gas‐Phase Cold Collisions

Cooling molecules in the gas phase is important for precision spectroscopy, cold molecule physics, and physical chemistry. Measurements of conformational relaxation cross sections shed important light on potential energy surfaces and energy flow within a molecule. However, gas‐phase conformational cooling has not been previously observed directly. In this work, we directly observe conformational dynamics of 1,2‐propanediol in cold (6 K) collisions with atomic helium using microwave spectroscopy and buffer‐gas cooling. Precise knowledge and control of the collisional environment in the buffer‐gas allows us to measure the absolute collision cross‐section for conformational relaxation. Several conformers of 1,2‐propanediol are investigated and found to have relaxation cross‐sections with He ranging from σ=4.7(3.0)×10^?18 cm² to σ>5×10^?16 cm². Our method is applicable to a broad class of molecules and could be used to provide information about the potential energy surfaces of previously uninvestigated molecules.     

N‐Annulated Perylene‐Substituted and Fused Porphyrin Dimers with Intense Near‐Infrared One‐Photon and Two‐Photon Absorption

Fusion of two N‐annulated perylene (NP) units with a fused porphyrin dimer along the S₀–S₁ electronic transition moment axis has resulted in new near‐infrared (NIR) dyes 1 a / 1 b with very intense absorption (ε>1.3×10⁵ M ^?1 cm^?1) beyond 1250 nm. Both compounds displayed moderate NIR fluorescence with fluorescence quantum yields of 4.4×10^?6 and 6.0×10^?6 for 1 a and 1 b , respectively. The NP‐substituted porphyrin dimers 2 a / 2 b have also been obtained by controlled oxidative coupling and cyclodehydrogenation, and they showed superimposed absorptions of the fused porphyrin dimer and the NP chromophore. The excited‐state dynamics of all of these compounds have been studied by femtosecond transient absorption measurements, which revealed porphyrin dimer‐like behaviour. These new chromophores also exhibited good nonlinear optical susceptibility with large two‐photon absorption cross‐sections in the NIR region due to extended π‐conjugation. Time‐dependent density functional theory calculations have been performed to aid our understanding of their electronic structures and absorption spectra.     

Determination of absolute photoionization cross‐sections of aromatics and aromatic derivatives

The absolute photoionization cross‐sections of aromatics and aromatic derivatives including toluene, ethylbenzene, n‐propylbenzene, o‐xylene, m‐xylene, p‐xylene, 1,3,5‐trimethylbenzene, styrene, phenylacetylene, indene, indane, 1‐methylnaphthalene, benzyl alcohol and benzaldehyde were measured at the photon energy range from ionization thresholds to 11.7 eV. The experiments were performed by tunable synchrotron vacuum ultraviolet (VUV) photoionization mass spectrometry. Benzene was chosen as a calibration standard, since its photoionization cross‐section is well known. Binary liquid mixtures of the investigated molecules and benzene were used in the measurements. Photo‐induced fragments from the molecules were also observed, and their photoionization cross‐sections are also presented. Copyright © 2009 John Wiley & Sons, Ltd.     

Role of resonances in building cross sections: Comparison between the Mittag–Leffler and the T‐matrix Green function expansion approaches

Peaks in collision cross sections are often interpreted as resonances. The complex dilation method, as well as other methods relying on analytic continuation of the scattering formalism, can be used to clarify whether these structures are true resonances in the sense that they are poles of the S‐matrix and the associated Green function. The performance of the Mittag–Leffler expansion and T‐matrix Green function expansion methods are formally and computationally compared. The two methods are applied to two model potentials. Eigenenergies, s‐wave residues, and cross sections are computed with both methods. The resonance contributions to the cross sections are further analyzed by removing the residue contributions from the Mittag–Leffler and Green function expansion sums, respectively. It is suggested that the contribution of a resonance to a cross section should be defined through its S‐matrix residue. © 2006 Wiley Periodicals, Inc. Int J Quantum Chem, 2007     

Laser ablation sample transfer for localized LC‐MS/MS proteomic analysis of tissue

We have developed a mid‐infrared laser ablation sampling technique for nano‐flow liquid chromatography coupled with tandem mass spectrometry proteomic profiling of discrete regions from biological samples. Laser ablation performed in transmission geometry was used to transfer material from 50‐µm thick tissue sections mounted on a glass microscope slide to a capturing solvent. Captured samples were processed using filter‐aided sample preparation and enzymatically digested to produce tryptic peptides for data‐dependent analysis with an ion trap mass spectrometer. Comparison with ultraviolet laser capture microdissection from neighboring regions on the same tissue section revealed that infrared laser ablation transfer has higher reproducibility between samples from different consecutive sections. Both techniques allowed for proteomics investigation of different organelles without the addition of surfactants. Copyright © 2016 John Wiley & Sons, Ltd.     

Total scattering cross sections for ethylene by electron impact for incident electron energies from 1 to 2000 eV

We report total scattering cross sections for C₂H₄ molecule by electron impact. Calculations are performed by using two different quantum mechanical methods and they cover the energy range from 1 to 2000 eV. For low energy calculations up to 15 eV, UK molecular R‐matrix code through QUANTEMOL‐N software is used, while intermediate to high energy (15–2000 eV) calculations were carried out by applying spherical complex optical potential formalism. Comparison is made with earlier measurements and theoretical data wherever available. A shape resonance is detected around 2 eV due to the ²B_2g symmetry of an electronic state that corresponds to the temporary negative ion formation of ethylene. The differential cross sections are also calculated for the energy range from 1 to15 eV for the scattering angles between 0º and 180º. © 2013 Wiley Periodicals, Inc.