Synthesis of new photoresponsive polyesters containing norbornadiene moieties by the ring‐opening copolymerization of donor–acceptor norbornadiene dicarboxylic acid anhydride with donor–acceptor norbornadiene dicarboxylic acid monoglycidyl ester derivatives

The ring‐opening copolymerization of donor–acceptor norbornadiene (D–A NBD) dicarboxylic acid monoglycidyl ester derivatives with D–A NBD dicarboxylic acid anhydride was performed with tetraphenylphosphonium bromide as a catalyst in toluene to produce new norbornadiene (NBD) polyesters containing D–A NBD moieties in the main chain and in the side chain in one step in good yields. The photoisomerization of the D–A NBD moieties in these polyesters proceeded very smoothly to give the corresponding quadricyclane groups. Because these NBD polyesters contained many NBD moieties in the polymer chain, they had the highest capacity for heat storage in the D–A NBD polymers reported so far. The stored thermal energy of the irradiated polyesters was evaluated by differential scanning calorimetry analysis to be approximately 150–190 J/g. © 2005 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 43: 4412–4421, 2005     

Two new tremulane sesquiterpenes from a mangrove endophytic fungus,Coriolopsis sp. J5

Two new tremulane sesquiterpenes coriolopsin A (1) and coriolopsin B (2), together with two known ones conocenol C (3) and ceriponol E (4), were isolated from the fermentation extract of endophytic fungus Coriolopsis sp. J5 from Ceriops tagal. The structures and absolute configuration of compounds 1 and 2 were determined based on HR-ESI-MS and spectroscopic data (IR, UV, 1D, 2D NMR and X-ray crystallographic analysis).     

Ab initio molecular dynamics studies of tetrasulfur. Dynamics coupling the C2v open and D2h closed forms of S4

Ab initio molecular dynamics (AIMD) simulations were performed on the closed D(2h) and open C(2v) isomers of tetrasulfur. After a careful calibration of the electronic structure method, the calculations were done using the BPW91/aug-cc-pVTZ method. This combination of method/basis set adequately reproduces the relative benchmark CCSD(T) energy difference [Matus, M.; Dixon, D.; Peterson, K. A.; Harkless, J. A. W.; Francisco, J. S. J. Chem. Phys. 2007, 127, 174305] between these two isomers and, crucially, the fact that the D(2h) structure is a transition state linking two equivalent (mirror images) C(2v) isomers. The trajectories show that the symmetric open C(2v) isomers interconvert when passing through the D(2h) closed transition state structure and that, unlike tetraoxygen, no three-dimensional structures arise. The dynamic vibrational analysis yields peaks in good agreement with the static CCSD(T) harmonic frequencies and explains higher peaks as overtones, thus showing that unlike previous AIMD DFT-based approaches, carefully calibrated exchange-correlation functionals can produce reliable molecular dynamics results for complex PESs as the one corresponding to the lowest singlet of S(4).     

BOOK REVIEW

Structure and Bonding , Volume 41, Edited by J. D. D unitz , J. B. G oodenough , P. H emmerich , J. A. I bers , C. K. J ørgensen , J. B. N eilands , D. R einen and R. J. P. W illiams .     

Analysis and calculation of the 31P and 19F NMR spectra of hexafluorocyclotriphosphazene

The higher order high-resolution (31)P and (19)F NMR spectra of hexafluorocyclotriphosphazene (F(2)PN)(3) were measured at 183 K and interpreted using subspectral analysis and iterative fitting computation. (F(2)PN)(3) forms a rigid nine-spin system [A[X](2)](3) with D(3h) symmetry. Two complete and very similar sets of six experimental spin-spin coupling constants, (1)J(P,F), (2)J(P,P), (2)J(F,F), (3)J(P,F), (4)J(F,F)(cis) and (4)J(F,F)(trans), were determined for the first time. Theoretical DFT calculations of chemical shifts and coupling constants were performed to assess their predictive value. The PP/aug-cc-pVDZ treatment rendered the best agreement with experimental data.     

Synthesis and characterization of optically active polyamides derived from carbohydrate-based monomers

The synthesis of three new stereoregular AB-type polyamides based on D -ribono-1,4-lactone, L -arabinose, and D -xylose has been carried out by the active ester polycondensation method. These polyamides were characterized by elemental analysis, IR and NMR spectroscopies, and powder X-ray diffraction. They displayed optical activity and had a pronounced affinity to water, although they were not soluble in this solvent. The polyamide obtained from D -ribono-1,4-lactone was highly crystalline and yielded films with spherulitic texture. © 1997 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 35: 3645–3653, 1997     

High resolution vacuum ultraviolet emission spectrum of D(2) from 78 to 103 nm: The D (1)Pi(u)-->X (1)Sigma(g) (+) and D(') (1)Pi(u) (-)-->X (1)Sigma(g) (+) band systems

The emission spectrum of the D(2) molecule has been studied at high resolution in the vacuum ultraviolet region 78.5-102.7 nm. A detailed analysis of the two D (1)Pi(u)-->X (1)Sigma(g) (+) and D(') (1)Pi(u) (-)-->X (1)Sigma(g) (+) electronic band systems is reported. New and improved values of the level energies of the two upper states have been derived with the help of the program IDEN [V. I. Azarov, Phys. Scr. 44, 528 (1991); 48, 656 (1993)], originally developed for atomic spectral analysis. A detailed comparison is made between the observed energy levels and solutions of coupled equations using the newest ab initio potentials by Wolniewicz and co-workers [J. Chem. Phys. 103, 1792 (1995); 99, 1851 (1993); J. Mol. Spectros. 212, 208 (2002); 220, 45 (2003)] taking into account the nonadiabatic coupling terms for the D (1)Pi(u) state with the lowest electronic states B (1)Sigma(u) (+), C (1)Pi(u), and B(') (1)Sigma(u) (+). A satisfactory agreement has been found for most of the level energies belonging to the D and D(') states. The remaining differences between observation and theory are probably due to nonadiabatic couplings with other higher electronic states which were neglected in the calculations.     

Do coupling exciton and oscillation of electron-hole pair exist in neutral and charged pi-dimeric quinquethiophenes?

Optical physical properties of neutral and charged quinquethiophene monomer, and neutral and cationic pi-dimeric quinquethiophenes were investigated with density functional theory as well as the two dimensional (2D) site (transition density matrix) and three dimensional (3D) cube (transition density and charge difference density) representations, stimulated by the recent experimental report [T. Sakai et al., J. Am. Chem. Soc. 127, 8082 (2005)]. Transition density shows the orientation and strength of the transition dipole moment of neutral and charged quinquethiophene monomer, and charge difference density reveals the orientation and result of the charge transfer in neutral and charged quinquethiophene monomer. To study if coupling exciton and oscillation of electron-hole pair exist in neutral and cationic pi-dimeric quinquethiophenes, the coupling constants J (coupling exciton of electron-hole pair) and K (coupling oscillation of electron-hole pair) were introduced to the exciton coordinate and momentum operators, respectively, and the 2D and 3D analysis methods were further developed by extending our previous theoretical methods [M. T. Sun, J. Chem. Phys. 124, 054903 (2006)]. With the new developed 2D and 3D analysis methods, we investigated the excited state properties of neutral and cationic pi-dimeric quinquethiophenes, especially on the coupling exciton and oscillation of electron-hole pair between monomers. The 2D results show that there is neither coupling exciton (J=0) nor oscillation (K=0) of electron-hole pair in neutral pi-dimeric quinquethiophenes. For some excited states of cationic pi-dimeric quinquethiophenes, there is no coupling exciton (J=0), but there is coupling oscillation (K not equal0); while for some excited states, there are both coupling exciton and coupling oscillator simultaneously (J not equal0 and K not equal0). The strength of transition dipole moments of pi-dimeric quinquethiophenes were interpreted with 3D transition density, which reveals the orientations of their two subtransition dipole moments. The 3D charge transition density reveals the orientation and result of intermonomer and/or intramonomer charge transfer. The calculated results reveal that excited state properties of neutral pi-dimeric quinquethiophene are significantly different from those of the cationic pi-dimeric quinquethiophenes.     

Studies on the conformational flexibility of α-L-rhamnose-containing oligosaccharides using 13C-site-specific labeling, NMR spectroscopy and molecular simulations: implications for the three-dimensional structure of bacterial rhamnan polysaccharides

Bacterial polysaccharides are comprised of a variety of monosaccharides, L-rhamnose (6-deoxy-L-mannose) being one of them. This sugar is often part of α-(1 → 2)- and/or α-(1 → 3)-linkages and we have therefore studied the disaccharide α-L-Rhap-(1 → 2)-α-L-Rhap-OMe to obtain information on conformational preferences at this glycosidic linkage. The target disaccharide was synthesized with (13)C site-specific labeling at C1' and at C2', i.e., in the terminal group. 2D (1)H,(13)C-HSQC-HECADE and (1)H,(13)C-J-HMBC NMR experiments, 1D (13)C and (1)H NMR spectra together with total line-shape analysis were used to extract conformationally dependent hetero- and homonuclear spin-spin coupling constants. This resulted in the determination of (2)J(C2',H1'), (3)J(C1',C1), (3)J(C1',C3), (3)J(C2',C2), (2)J(C1',C2), (1)J(C1',C2'), and (1)J(C1',H1'). These data together with previously determined J(CH) and (1)H,(1)H NOEs result in fourteen conformationally dependent NMR parameters that are available for analysis of glycosidic linkage flexibility and conformational preferences. A 100 ns molecular dynamics (MD) simulation of the disaccharide with explicit water molecules as solvent showed a major conformational state at φ(H)≈ 40° and ψ(H)≈-35°, consistent with experimental NMR data. In addition, MD simulations were carried out also for α-L-Rhap-(1 → 3)-α-L-Rhap-OMe and a rhamnan hexasaccharide. The gathered information on the oligosaccharides was used to address conformational preferences for a larger structure, a 2- and 3-linked nonasaccharide, with implications for the 3D structure of rhamnan polysaccharides, which should be regarded as flexible polymers.     

Isolation and Structure Elucidation of Nortriterpenoids from Schisandra rubriflora

Seven new highly oxygenated nortriterpenoids, rubriflorins D–J ( 1 – 7 ), were isolated from the leaves and stems of Schisandra rubriflora, and their structures were elucidated on the basis of extensive analysis of spectroscopic data. These new compounds feature the opening of ring A compared with related known nortriterpenoids isolated from the genus Schisandra and showed weak activity against HIV‐1.     

CLOPPA-IPPP analysis of electronic mechanisms of intermolecular (1h)J(A,H) and (2h)J(A,D) spin-spin coupling constants in systems with D-H...A hydrogen bonds

The electronic origin of intermolecular (2h)J(A,D) and (1h)J(A,H) couplings is discussed by means of the CLOPPA-IPPP approach in several model complexes with D-H...A hydrogen bonds. It is found that the origin of these couplings is mainly due to the interaction between the acceptor sigma lone pair and vacant molecular orbitals localized in the D-H...A moiety, regardless of the donor and acceptor nuclei. The problem of the larger absolute value of (2h)J(A,D) compared to (1h)J(A,H) is also addressed.     

NMR analysis of conformationally dependent (n)J(C, H) and (n)J(C, C) in the trisaccharide α-L-Rhap-(1 → 2)[α-L-Rhap-(1 → 3)]-α-L-Rhap-OMe and a site-specifically labeled isotopologue thereof

An array of NMR spectroscopy experiments have been carried out to obtain conformationally dependent (1)H,(13)C- and (13)C,(13)C-spin-spin coupling constants in the trisaccharide α-L-Rhap-(1 → 2)[α-L-Rhap-(1 → 3)]-α-L-Rhap-OMe. The trisaccharide was synthesized with (13)C site-specific labeling at C2' and C2″, i.e. in the rhamnosyl groups in order to alleviate (1)H spectral overlap. This facilitated the measurement of a key trans-glycosidic proton-proton cross-relaxation rate using 1D (1)H,(1)H-T-ROESY experiments as well as a (3)J(C, H) coupling employing 1D (1)H,(13)C-long-range experiments, devoid of potential interference from additional J coupling. By means of both the natural abundance compound and the (13)C-labeled sample 2D (1)H,(13)C-J-HMBC and (1)H,(13)C-HSQC-HECADE NMR experiments, total line-shape analysis of (1)H NMR spectra and 1D (13)C NMR experiments were employed to extract (3)J(C, H) , (2)J(C, H), (3)J(C, C), and (1)J(C, C) coupling constants. The (13)C site-specific labeling facilitates straightforward determination of (n)J(C, C) as the splitting of the (13)C natural abundance resonances. This study resulted in eight conformationally dependent coupling constants for the trisaccharide and illustrates the use of (13)C site-specific labeling as a valuable approach that extends the 1D and 2D NMR methods in current use to attain both hetero- and homonuclear spin-spin coupling constants that subsequently can be utilized for conformational analysis.     

Limonoids from the leaves of Swietenia macrophylla

One new limonoid of the phragmalin type (1) named Swietenine J with nine known compounds methyl-6-β-hydroxy angolensate (2), 1-O-acetylkhayanolide A(3), Khayanolide E (4), Khayalactone (5), Khayanone (6), 1-O-Acetylkhayanolide B (7), 1-O-Deacetylkhayanolide E (8), Khayanolide A (9), Khayanolide B (10) were isolated from Swietenia macrophylla. The structure of 1 was elucidated on the basis of 1D and 2D- NMR spectroscopic analysis.     

Efficient formulation of the stochastic simulation algorithm for chemically reacting systems

In this paper we examine the different formulations of Gillespie's stochastic simulation algorithm (SSA) [D. Gillespie, J. Phys. Chem. 81, 2340 (1977)] with respect to computational efficiency, and propose an optimization to improve the efficiency of the direct method. Based on careful timing studies and an analysis of the time-consuming operations, we conclude that for most practical problems the optimized direct method is the most efficient formulation of SSA. This is in contrast to the widely held belief that Gibson and Bruck's next reaction method [M. Gibson and J. Bruck, J. Phys. Chem. A 104, 1876 (2000)] is the best way to implement the SSA for large systems. Our analysis explains the source of the discrepancy.     

A high-frequency and high-field EPR study of new azide and fluoride mononuclear Mn(III) complexes

The isolation, structural characterization and electronic properties of three new six-coordinated Mn(III) complexes, [Mn(bpea)(F)(3)] (1), [Mn(bpea)(N(3))(3)] (2), and [Mn(terpy)(F)(3)] (3) are reported (bpea = N,N-bis(2-pyridylmethyl)-ethylamine; terpy = 2,2':6',2' '-terpyridine). As for [Mn(terpy)(N(3))(3)] (4) (previously described by Limburg J.; Vrettos J. S.; Crabtree R. H.; Brudvig G. W.; de Paula J. C.; Hassan A.; Barra A-L.; Duboc-Toia C.; Collomb M-N. Inorg. Chem. 2001, 40, 1698), all these complexes exhibit a Jahn-Teller distortion of the octahedron characteristic of high-spin Mn(III) (S = 2). The analysis of the crystallographic data shows an elongation along the tetragonal axis of the octahedron for complexes 1 and 3, while complex 2 presents an unexpected compression. The electronic properties were investigated using a high-field and high-frequency EPR study performed between 5 and 15 K (190-575 GHz). The spin Hamiltonian parameters determined in solid state are in agreement with the geometry of the complexes observed in the crystal structures. A negative D value found for 1 and 3 is related to the elongated tetragonal distortion, whereas the positive D value determined for 2 is in accordance with a compressed octahedron. The high E/D values, in the range of 0.103 to 0.230 for all complexes, are correlated with the highly distorted geometry present around the Mn(III) ion. HF-EPR experiments were also performed on complex 1 in solution and show that the D value is the only spin Hamiltonian parameter which is slightly modified compared to the solid state (D = -3.67 cm(-1) in solid state; D = -3.95 cm(-1) in solution).     

Features of the alkynyl ruthenium chromophore with modified anionic subsystem UV absorption

Theoretical simulation of UV-vis absorption for a new series of alkynyl ruthenium chromophores spectra and investigations the influence of anionic substituence on a spectral shift of UV absorption was presented. The MM(+) molecular force field method was used for total energy minimization and for building of the molecular optimized geometry [S.J. Weiner, P.A. Kollman, D.A. Case, U.C. Ghio, G. Alagona, J.S. Profeta, P. Weiner, J. Am. Chem. Soc. 106 (1984) 765; S.J. Weiner, P.A. Kollman, D.T. Nguyen, D.A. Case, J. Comput. Chem. 7 (1986) 230]. All quantum chemical calculations were performed by semi-empirical ZINDO/1 method within a framework of the restricted Hartree-Fock approach and convergence limit up to 10(-6)eV after 500 iterations was achieved. Good agreement between the theoretically calculated and experimentally measured spectra was observed. The largest spectral shift in position of absorption peaks was observed for compound containing the anionic (Cl), substituent. The theoretically calculated absorption maximum is blue shifted with respect to the experimental spectra for all compounds what is connected with the changes of the charge transfer determining the corresponding state dipole moments. Analysis of the theoretical spectra shows a substantial sensitivity to the backside groups.     

Microwave spectra of O(2)-HF and O(2)-DF: hyperfine interactions and global fitting with infrared data

Spectra of the open shell complexes O(2)-HF and O(2)-DF were recorded using Fourier transform microwave spectroscopy. A complete analysis of the hyperfine structure and a global fit including microwave and infrared frequencies [W. M. Fawzy, C. M. Lovejoy, D. J. Nesbitt, and J. T. Hougen, J. Chem. Phys. 117, 693 (2002)] are reported. The Fermi contact interaction between the electron and nuclear spins, the electron spin-nuclear spin dipolar interaction, the nuclear spin-nuclear spin dipolar interaction, and the nuclear electric quadrupole interaction (for O(2)-DF) were considered in the analysis. The correspondence between the magnetic hyperfine constants and the two nuclei of the H(D)F is unambiguously established. In both O(2)-HF and O(2)-DF, the Fermi contact parameter is larger for the fluorine than for the hydrogen, while for the nuclear spin-electron spin dipolar hyperfine constants, the reverse is true. The effective angle between the HF bond and the a axis of the complex, determined from the nuclear spin-nuclear spin interaction constant, is 38(4) degrees. The same angle for the DF complex, derived from the deuterium nuclear quadrupole coupling constant, is 31(4) degrees.     

1D silver(I) complex of nitronyl nitroxide with strong spin-spin interaction through silver(I) ion

A 1D silver(I) complex of nitronyl nitroxide was prepared and its structure was determined by X-ray diffraction analysis; magnetic studies indicate that the spin-spin interaction of nitronyl nitroxides through silver(I) ions along the chain are fairly strong (J/kb = -84 K).     

Synthesis of new photoresponsive polyesters containing norbornadiene residues by the polyaddition of donor–acceptor norbornadiene dicarboxylic acid diglycidyl ester with dicarboxylic acids and their photochemical properties

A donor–acceptor norbornadiene derivative, 5‐(4‐methoxyphenyl)‐1,4,6,7,7‐pentamethyl‐2,5‐norbornadiene‐2,3‐dicarboxylic acid diglycidyl ester (D–A NDGE), was synthesized by the reaction of the cesium salt of 5‐(4‐methoxyphenyl)‐1,4,6,7,7‐pentamethyl‐2,5‐norbornadiene‐2,3‐dicarboxylic acid with epibromohydrin in N‐methyl‐ pyrrolidone (NMP). The polyaddition reactions of D–A NDGE with certain dicarboxylic acids were carried out with tetrabutylammonium bromide as a catalyst in NMP, producing corresponding polyesters containing D–A norbornadiene (NBD) residues in the main chain in fair to good yields. The photoisomerization of the D–A NBD residues in the polyesters proceeded very smoothly, forming the corresponding quadricyclane groups. The photoreactivities of the D–A NBD residues in the polymer were 50 times higher than those of the NBD residues in the film state and 60 times higher than those in a tetrahydrofuran solution. The stored energy in the quadricyclane groups of the polymers was about 45–55 kJ/mol according to differential scanning calorimetry analysis of the irradiated polymer films. © 2001 John Wiley & Sons, Inc. J Polym Sci Part A: Polym Chem 39: 2683–2690, 2001     

14‐Membered Cyclopeptides from Paliurus ramosissimus and P. hemsleyanus

Six 14‐membered cyclopeptide alkaloids, i.e., ramosines A–C, mucronine J, and lotusines A and D, were isolated from the roots of Paliurus ramosissimus, and an additional four, hemsines A–D, from the roots of P. hemsleyanus. Among these, ramosines A–C ( 1, 5 , and 6 , resp.) and hemsines A and B ( 7 and 8 , resp.) are new bases of the amphibine‐B type, and hemsines C and D ( 9 and 10 , resp.) are new integerrine‐type alkaloids. Additionally, ramosine C ( 6 ) represents the first 14‐membered cyclopeptide alkaloid possessing a substitution (? OH) at C(13′). Their structural elucidations were based on spectral analysis and molecular‐modeling studies. Pronounced solvent effects in the ¹H‐ and ¹³C‐NMR spectra of these two types of alkaloids were observed.