The manifestation of non-bonded attraction in the physical properties of cis and trans olefins

Non-bonded attraction is suggested to account for a host of differences in the physical properties of cis and trans olefins of the type XHC=CHX. The main predictions are: (i) The cis isomer is more stable than the trans isomer; (ii) The C=C bond is longer and the C-X bonds are shorter for the cis isomer; (iii) The π MO's orbital energies of the two isomers differ such that the trans isomer is a better electron donor and electron acceptor than the cis isomer. Ab initio calculations at the STO-3G and the 4-31G levels in support of the model are presented. The photoelectron spectra of cis and trans difluoro, dichloro and dibromoethylene are discussed, and found to be in accord with our qualitative model.     

Palladium(II) coordination and cyclometallated complexes derived from 3- and 5-aryl-substituted pyrazoles

Palladium(II) coordination complexes of nine 3- or 5-arylpyrazoles (phenyl, 2-bromophenyl, or 3-methoxyphenyl), as well as of 3,5-diphenylpyrazole, are reported. A cis-trans mixture of [PdL₂Cl₂] isomers is found in the case of 3-aryl-1-methylpyrazoles, the cis-isomers being transformed into trans by heating. Only trans isomers are isolated with the other ligands. Cyclopalladation of 3-ary]-1-methylpyrazoles can be performed with palladium(II) acetate, and the resultant μ-acetate bridged dimers can be transformed into μ-chloro bridged dimers or acetylacetonate monomers. The structures of the complexes have been characterized by ¹H- and ¹³C-NMR spectroscopy.     

Organotin compounds : X. Organotin hydride addition to methyl cyclohexene-1-carboxylate and methyl indene-3-carboxylate

Free radical hydrostannation of methyl cyclohexene-1-carboxylate (I) and methyl indene-3-carboxylate (III) with trialkyltin hydrides, R₃SnH (R = Me, n-Bu, Ph) gives the energetically unfavourable cis products, 2-trialkylstannyl cyclohexanecarboxylate (II) and 2-trialkylstannyl indane-1-carboxylate (IV) in high yields, via a trans addition of the tin hydrides. The hydride abstractions by the intermediate trialkylstannylcyclohexanyl (VIII) and trialkylstannylindanyl (IX) intermediate radicals take place stereospecifically, and exclusively from the less hindered ring side. The structures of the isomers II and IV were established by (a) their transformation into the corresponding chlorodialkylstannyl derivatives V and VI, which were shown spectroscopically to have cis stereochemistries by intramolecular complexation of the ester group, and (b) their NMR data. Full ¹H, ¹³C, and ¹¹⁹Sn NMR data are given.     

Synthesis and structure of novel heterocyclic aminotelluranes

A series of novel 6-alkoxy-12H, 14H-[1,2,3]benzoxatellurazino[2,3-b]-[1,2,3]benzoxatellurazines 3 was synthesized from tetraalkoxytelluranes and bis(2-hydroxybenzyl)amines. ¹H, ¹³C and ¹²⁵Te NMR studies suggest that these aminotelluranes, unlike their orthoamidoester analogs, have a rigid trans-fused conformation. A preferential trans-fused conformation was also deduced from ab initio MO calculations of a model oxatellurazinooxatellurazine 7, using the STO-3G and SBK basis sets, and the Gaussian-92 program, which imply that the trans-fused aminotellurane is more stable than the corresponding cis isomer by 10.3 kcal/mol.     

Synthesis of tetramethyldisilane-bridged bis(1-indenyl) tetracarbonyl di-iron: A novel thermal rearrangement reaction between the Si-Si and Fe-Fe bonds

The title complex (Me₂SiSiMe₂)(η⁵-l-indenyl)Fe(CO)]₂(μ-CO)₂ (1) was prepared by the reaction of 1,2-bis(1-indenyl)tetramethyl-disilane and Fe(CO)₅ in refluxing heptane. Its thermal rearrangement product [Me₂Si(η⁵-1-indenyl)Fe(CO)₂]₂ (2) was also obtained from the reaction. 1 in refluxing xylene can be readily converted into 2. The crystal structures of the cis isomer 1c and the trans isomer 2t were determined by X-ray diffraction.     

Preparation and steric structures of saturated or partially saturated cyclopentane-and cyclohexane[b]pyrrolo[1,2-a][3,1]benzoxazine isomers [1]

The reactions of 2-ethoxycarbonylmethyleyclopentanone (1) with cis- (3a) and trans-2-hydroxymethylcyclohex-4-enyl-1-amine (3b) and of 2-ethoxycarbonylmethylcyclohexanone (2) with stereoisomeric 2-hydroxymethyl-1-cyclohexylamines (4a,b) yield the isomeric cyclopentane-(5a,b) and cyclohexane[b] pyrrolo[1,2-a][3,1]benzoxazinones (6a,b) with unsaturated (5) or saturated (6) ring A. The steric structures were elucidated by means ¹H, ¹³C NMR and X-ray measurements.     

2-(Phenyltelluromethyl)tetrahydrofuran (L) and 2-(2-{4-methoxyphenyl}telluroethyl)-1,3- dioxolane (L) and their palladium(II) and platinum(II) complexes

The nucleophile [ArTe⁻] generated in situ borohydride solution of Ar₂Te₂, reacts with 2-(chloromethyl) tetrahydrofuran and 2-(2-bromoethyl)-1,3-dioxolane resulting in L¹ and L², respectively. The complexes of palladium(II) and platinum(II) with L¹/L² having stoichiometries [MCl₂·L₂], [ML₂](ClO₄)₂, [(DPPE)ML₂](ClO)₄)₂, [(PPh₃)₂ML₂](ClO₄)₂ and [(phen)ML₂](ClO₄)₂ (where L = L¹/L² DPPE = Ph₂PC H₂CH₂PPh₂, PHEN = 1,10-phenanthroline and M = Pd/Pt) have been synthesized. IR, ¹H, ¹²⁵Te{¹H} and ³¹P{¹H} NMR and UV-vis spectral data of these species in conjunction with their molar conductance and molecular weight data have been used to authenticate the new species. In all complexes (1–20) the ligands L¹ and L² are coordinated through tellurium and in the complexes of formula [ML₂](ClO₄)₂ (M = Pd, Pt) the ligand is bidentate with the oxygen atom used in complexation. In solution, complexes PtCl₂L₂ exist as a mixture of cis and trans isomers whereas only the trans isomer was observed for the palladium analogues. The [(phen)PdL₂](ClO₄)₂(Q) quenches ¹O₂ readily. The plot of log [Q] vs time is linear. Mechanism compatible with the experimental observations is proposed.     

X-ray diffraction studies on cis- and trans-4'-cyanobiphenyl-4-yl 3-n-propylcyclobutane-1-carboxylate

X-ray diffraction has been used to study the nematic phases of the cis and trans isomers of an elongated molecule containing the cyclobutane group. It has been shown that these nematic phases consist of a mixture of single molecules and overlapping core dimers. It has been found that increasing the temperature of the cis isomer rapidly reduces the dimer population, whereas increasing the temperature of the trans isomer enhances the dimer population. This provides an explanation of the relatively high clearing temperature of the trans isomer. The different temperature dependences of the dimer population in the cis and trans isomers has been explained by a model involving inversion of the cylobutane group.     

Construction and investigation of photo-switch property of azobenzene-bridged pillar[5]arene-based [3]rotaxanes

Series of azobenzene-bridged pillar[5]arene-based [3]rotaxanes with different alkyl chain length of guest molecules were constructed by threading-endcapping method with alkylenetriazole as axile and tetrahydrochromene as endcapping group.The encapsulation of pillar[5]arenes were proved by highresolution mass,¹ H NMR and NOESY spectra.The photo-responsive property were examined by irradiation of the synthesized [3]rotaxanes with 365 nm and blue light LED,which caused trans to cis and cis to trans isomerization,respectively.Irradiation of corresponding model guest compounds without pillar[5]arene encapsulation resulted in near completely trans to cis and cis to trans isomerization,indicating the existence of pillar[5]arenes is the determining factor for the comprised photo isomerization efficiency.     

Isomeric complexes of ruthenium(II) with neutral heterocyclic schiff base ligands. High resolution proton resonance spectra of trans-cis isomeric pairs of RuX2L2 (L = 2-arylpyridinecarboxaldimine, X = Cl, Br) and comparison of their physical properties

The reaction of 2-arylpyridinecarboxaldimine [RH₄C₆NC(H)Py, L (1)] with hydrated RuX₃ (X = Cl, Br) in boiling C₂H₅OH affords dark crystals of RuX₂L₂. Two geometrical isomers of the compound have been isolated and characterized by analytical and spectroscopic data. The trans isomer of RuCl₂L₂ shows a single sharp band for ν(Ru---Cl), whereas two bands are observed for the corresponding cis isomer. The highresolution ¹H NMR spectra of the isolated complexes are reported and completely assigned. All the complexes have multiple t₂→π^*(L) transitions in the visible region. Each of the complexes display a quasi-reversible oxidative response due to an Ru^III/Ru^II couple in the range 0.25–0.40 V vs S.C.E. at a platinum working electrode. The formal potentials of this couple obey the Hammett relationship. The ligand-based irreversible oxidations are also briefly noted.     

X-ray study of the hetero ring flexibility in trans-5,6- trimethylene- and tetramethylene-5,6-dihydro 2-phenyl-[4H]-1,3-thiazines

The structures to two 1,3-thiazine derivatives differing only in the number of CH₂ groups in their trans fused hydrocarbon ring (_n = 3 for I and n = 4 for II) have been established by X-ray crystallography from diffractometer data. Crystals of I (trans-5,6- trimethylene-5,6-dihydro-2-phenyl-[4H] - 1,3-thiazine) are triclinic, space group P with a = 7.661(1), b = 8.282(1), c = 9.566(2) Å, = 91.75(1), β = 100.72(1), γ = 105.45(1)° Z = 2, D_c = 1.260 g cm^-3. Crystals of II (trans-5,6-tetramethylene-5,6-dihydro-2-phenyl [4H]-1,3-thiazine) are monoclinic, space group P2₁/c with a = 7.914(2), b = 19.362(13), c = 8.440(1) Å, β = 109.16(2)°C Z = 4, D_c = 1.258 g cm^-3. The structures determined by Patterson (I) and direct (II) methods were refined to R = 0.050 for 1330 reflections of I and R = 0.082 for 1012 reflections of II. The proper treatment of the positional disorder of the carbon atoms (C(5) and C(6)) forming the trans ring junction in I discovered two discrete conformations with a ratio of 1:2. The opposite chirality of atoms C(51) and C(52), and C(61) and C(62), indicates a simultaneous configurational disorder with a pattern of total disorder: A A . The puckering parameters of the hetero rings in the same enantiomers of molecules IA, IB and II indicate a connection between the conformers: ⁵E(II)→⁵H₆(IB)→E₆IA) via pseudorotation. Their relationship is discussed and compared with the conformational freedom of the analogous 1,3-oxazine derivatives.     

N,N'-二-[3-羟基-4-(2-苯并噻唑)苯基]脲的光谱实验与密度泛函理论研究

利用实验观测与密度泛函理论(DFT)计算方法考察了新化合物N, N'-二-[3-羟基-4-(2-苯并噻唑)苯基]脲(4-DHBTU)的红外、核磁与紫外吸收光谱性质.与单体2-(4-氨基-2-羟苯基)苯并噻唑(4-AHBT)相比, 4-DHBTU的实验紫外吸收强度显著增强,最大吸收峰发生了明显红移,并呈现出双吸收峰特征.结合实验光谱数据与密度泛函理论计算分析表明, 4-DHBTU分子最稳定的基态异构体为cis-C₁₁和trans-C₁₁,而导致上述紫外光谱差异的主要原因是4-DHBTU样品中cis-C₁₁, trans-C₁₁, cis-C₂₂, trans-C₂₂等多种异构体共存.此外, 4-DHBTU与溶剂二甲基亚砜(DMSO)间氢键作用使得核磁实验中4-DHBTU的15H、16H氢谱化学位移显著增大.     

An improved synthetic method and vibrational study of (pentamethylcyclopentadienyl) dicarbonylrhenium dihalides (η-C5Me5)Re(CO)2X2 (X = C1, Br and I)

An improved synthetic method has been found for the preparation of the pentamethylcyclopentadienyl rhenium dicarbonyldihalide complexes. From the reaction of (η⁵-C₅Me₅)Re(CO)₃ with Br₂ or I₂ in THF-H₂O a mixture of cis and trans isomers of (η⁵-C₅Me₅)Re(CO)₂X₂ X = Br and I is formed. On the other hand, the reaction of [(η⁵-C₅Me₅)Re(CO)₃C1][SbC1₆] in water gives the cis-(η⁵-C₅Me₅)Re(CO)₂C1₂ complex. The solid IR spectra of the dicarbonyldihalide complexes are recorded and an assignment of the normal modes in terms of local symmetry is suggested by comparison with those observed in analogous molecules. A normal coordinate analysis performed using a modified general valence force field and considering simplified models, confirms most of the experimental assignments. The set of valence force constants reflects the structure of the isomers under study.     

Multidimensional anharmonic calculation of the vibrational frequencies and intensities for the trans and cis isomers of HONO with the use of normal coordinates

The equilibrium geometry and the potential energy and dipole moment surfaces have been determined for the cis and trans isomers of the HONO molecule by an ab initio Moller–Plesset (MP2) calculation with a wide set of atomic orbitals. The multidimensional anharmonic vibrational Schrodinger equations are solved using the variational method with the Hamiltonian and wave functions written in the normal coordinates of cis and trans isomers. All one- and two-dimensional and a number of three-dimensional vibrational problems are solved to obtain the energy levels and vibrational eigenfunctions. The frequencies and intensities for the fundamental, overtone and some combination bands are determined in good agreement with the available experimental results. The calculation shows the strength of coupling between different vibrational modes and reveals the presence of strong resonances between the (v₁, v₃, v₆) and (v₁, v₃−1, v₆+2) states of cis-HONO. This fact may be important for understanding the energy redistribution between the intermolecular degrees of freedom. The magnitude and direction of vibrationally averaged ground-state dipole moment of both isomers, as well as the direction of transition dipole moments, are in good agreement with the experimental findings. The changes in the values of dipole moment and some geometrical parameters of cis- and trans-HONO on vibrational excitation are also computed.     

Cis- and trans-3-hexene: infrared spectrum in liquid argon solution, ab initio calculations of equilibrium geometry, normal coordinate analysis, and vibrational assignments

The infrared spectra of cis-3-hexene and trans-3-hexene dissolved in liquid argon have been obtained at temperatures from 93 to 120 K. The absorptions were observed with a low-temperature cell and a Fourier transform infrared spectrophotometer. Ab initio molecular orbital calculations were performed to obtain the equilibrium geometry, vibrational frequencies, force fields, and infrared intensities. The calculations were done at the Hartree-Fock level using 6-31G basis set. The Cartesian force fields from ab initio calculations have been converted to the force field in symmetry coordinates. The scale factors of ab initio calculated force fields were determined. Normal coordinate calculations were performed using a scaled quantum mechanical (SQM) force field. Vibrational normal modes calculated for the lowest energy rotamers of cis- and trans-3-hexene have been assigned to infrared absorption bands observed in liquid argon solution. The assignments were based on calculated frequencies and potential energy distributions. The equilibrium geometries of the two lowest energy rotamers (symmetry C₂ and C_s) of cis-3-hexene and of the three lowest energy rotamers (symmetry C_i, C₂, and C₁) of trans-3-hexene were calculated. Variable temperature studies of the infrared spectrum of cis- and trans-3-hexenes dissolved in liquid argon were done to obtain the ΔH of conversion between the rotamers C₂ and C_s of cis-3-hexene and between the rotamers C_i, C₂, and C₁ of trans-3-hexene.     

Stemmosides C and D, two novel unusual pregnane glycosides from Solenostemma argel: structural elucidation and configurational study by a combined NMR-quantum mechanical strategy

Stemmosides C and D, two novel pregnane glycosides characterized by an unusual C-17 side chain were isolated from the pericarps of Solenostemma argel. In addition, stemmoside D displays an uncommon 14β proton configuration, apparently being the first pregnane isolated from plants known to have a 15 keto, cis CD ring junction. Their structures have been established by ESIMS and NMR experiments. The relative configuration of the molecules was determined using a strategy based on the simulation of ¹H, ¹³C, and J coupling NMR parameters. DFT calculations of ¹H and ¹³C chemical shifts, and of the ¹H homonuclear spin–spin coupling constants were performed with the mPW1PW91 functional using the 6-31G(d,p) basis set on the fully optimized geometries of all the possible stereoisomers.     

Trans-cis isomerization of an azoxybenzene liquid crystal

Trans-cis isomerization was investigated in a room temperature liquid crystal mixture of two azoxybenzene compounds. Experiments were performed on isolated molecules in dilute solutions and on the liquid crystal phase composed of the pure compounds. The absorption spectra of the trans and cis isomers were found to be similar to those of azobenzene compounds, as were the birefringence and order parameter of the nematic liquid crystal phase. The photo-optic properties were also similar in that irradiation by ultraviolet light caused the conversion from trans to cis isomers, while short wavelength visible light incident on these compounds resulted in the conversion from cis to trans isomers. The activation energy for thermal relaxation from the cis to trans isomer in the liquid crystal phase was determined to be (66±7) kJ/mole, which is less than for azobenzene in solution. While a photostationary state in a dilute solution with approximately equal numbers of trans and cis isomers was achieved, the nematic-isotropic transition of the mixture of the pure compounds decreased from 70°C to room temperature with a cis concentration of only about 12%. One unusual finding was that the photostationary concentration of trans and cis isomers due to irradiation with light of a specific visible wavelength depended on the starting concentrations of the two isomers, indicating that there may be a molecular conformation that is not photo-responsive and relaxes only thermally.     

Stereochemical studies of optically active 2-hydroxy-5-alkyl-δ-valerolactone derivatives as chiral dopant for ferroelectric liquid crystals

Both (2S, 5R)- and (2R, 5R)-2-hydroxy-5-alkyl-δ-valerolactone derivatives, cis and trans, respectively, show almost the same magnitude of spontaneous polarization (P_s) when added to a non-chiral smectic C mixture. The stereochemistry of these chiral dopants was studied using ¹H NMR. Trans derivatives seem to have a half-chair conformation with the 2, 5-diequatorial substituents and the cis derivatives have rather a flat conformation in solution. However in the liquid-crystalline phase, the cis and trans derivatives appear to change their conformation or the distribution of their conformations as the alkyl chain length is varied. The difference in the effect as a chiral dopant depends upon lateral interactions between chiral molecules through the solvent liquid crystal phase.     

Palladium(II) coordination and cyclometallated complexes derived from 1-tert-butylpyrazole

The synthesis and characterization of a number of new coordination compounds of Pd^II with the nitrogen donor 1-tert-butylpyrazole (^tBuPzH) are described. Compounds are trans-[Pd(^tBuPzH)₂Cl₂] and the cyclometallated structures [Pd₂(^tBuPz)₂(AcO)₂] and [Pd₃(^tBuPz)₂(AcO)₄]. All these complexes are mixtures of syn and anti isomers. Also, the chloro-bridged complex [Pd₂(^tBuPz)₂Cl₂] has been isolated as an equilibrium mixture of cis and trans isomers. The compounds have been studied by variable temperature ¹H- and ¹³C-NMR spectroscopy.     

Coordination geometry of chromium(VI) species. The first example of cis-bridging chromate ions in helically structured catena(μ-CrO4-O,O′)[Ni(HIm)3H2O]

Nickel(II) chromate complex with imidazole (HIm) was isolated from the [Ni²⁺–HIm–CrO₄²⁻] system in various experimental conditions, i.e. reagent molar ratios and nickel(II) salts. The catena(μ-CrO₄-O,O′)[Ni(HIm)₃H₂O] (1) crystallizes in monoclinic crystal system—space group P2₁/n with cell parameters: a=11.784(2), b=8.899(2), c=13.934(3) (Å), β=95.19(3) (°). The unit cell contains two independent helixes, left- and right-handed, stabilized by intrahelical and interhelical hydrogen bonds (HB) and π–π interactions. The cis coordination of the CrO₄²⁻ anions and the HB systems appeared to be the main determinants of the helical architecture. To the best of our knowledge the cis-chromate coordination was observed for the first time. The cis coordination causes the distortion of the nickel octahedron, which was analysed by 4 K single crystal electronic spectra with D_4h symmetry approximation (gaussian resolution and crystal field parameters). This symmetry was also confirmed with the polarised electronic spectra. The magnetic properties of the complex suggest the occurrence of weak intrachain antiferromagnetic interactions between the magnetic Ni^II center. The computational DFT studies of complex 1 assuming three possible isomers mer[(HIm)₃]–cis[(CrO₄²⁻)₂], mer–trans and fac–cis suggested that the main contribution to the stability of 1 might have interhelical and intrahelical hydrogen bonds.