The Crystal and Molecular Structure of 9-(3-Pentyl)-3,4,6,7,9,10-hexahydro-1,8(2H,5H) -acridine-dione

The crystal structure of the title compound is described. The structure has two molecules in the asymmetric unit and it crystallizes in the orthorhombic space group Pca21 with Z = 8. The unit cell dimensions are a = 14.574(2), b = 8.924(1) and c = 24.704(10) Å, V = 3212.7(14) ų, D_calc = 1.188 gcm^-3. All the rings of the molecule A adopt sofa conformation. One of the outer rings of molecule B adopts distorted sofa while the other two rings adopt sofa conformation.     

Synthesis and crystal structure of 3-chloro-<Emphasis Type="Italic">N</Emphasis>-(2-chloro-5-(1,3-dioxo-4,5,6,7-tetrahydro-1H-isoindol-2(3H)-yl)-4-fluorophenyl)-2,2-dimethylpropanamide

The title compound 3-chloro-N-(2-chloro-5-(1,3-dioxo-4,5,6,7-tetrahydro-1H-isoindol-2(3H)-yl)-4-fluorophenyl)-2,2-dimethylpropanamide was synthesized by the reaction of 2-(5-amino-4-chloro-2-fluorophenyl)-4,5,6,7-tetrahydro-2H-isoindole-1,3-dione with 3-chloro-2,2-dimethylpropanoyl chloride. Its structure was determined by X-ray single crystal diffraction. The crystal belongs to triclinic, space group P-1 with the following crystallographic parameters: a = 9.595(3) Å, b = 12.093(4) Å, c = 18.433(6) Å, α = 83.961(5)^∘, β = 84.819(5)^∘, γ = 67.920(5)^∘, μ = 0.361 mm⁻¹, V = 1967.9(10) ų, Z = 4, Dx = 1.395 mg/m³, F(000) = 856, T = 293(2) K, 1.11^∘ ≤ θ ≤ 25.01^∘. The X-ray results demonstrated that the reaction of 2-(5-amino-4-chloro-2-fluorophenyl)-4,5,6,7-tetrahydro-2H-isoindole-1,3-dione with 3-chloro-2,2-dimethylpropanoyl chloride in tetrahydrofuran at room temperature yielded 3-chloro-N-(2-chloro-5-(1,3-dioxo-4,5,6,7-tetrahydro-1H-isoindol-2(3H)-yl)-4-fluorophenyl)-,2-dimethylpropanamide.     

Intramolecular hydrogen bonding and tautomerism in 1-[N-(4-bromophenyl)]aminomethylidene-2(1H) naphthalenone

1-[N-(4-bromophenyl)]aminomethylidene-2(1H)naphthalenone (C₁₇H₁₂NOBr) (1) was synthesized and its crystal structure was determined. Compound (1) is monoclinic, space group P2₁/n with a = 4.808(1) Å, b = 20.617(1) Å, c = 13.750(1) Å, = 93.004(1)°, V = 1361.11(3) ų, Z = 4, D_c = 1.592 g·cm^–3, (Mo K) = 3.014 mm^–1, R = 0.051 for 1013 reflections [I > 2(I)]. There is a strong intramolecular hydrogen bond of distance 2.544(2) Å between the hydroxyl oxygen atom and imine nitrogen atom, the hydrogen atom essentially being bonded to the nitrogen atom. The title molecule is not planar. X-ray crystal structure determination reveals the existence of the keto (or predominantly keto) tautomer in (1). Spectra of compound (1) were observed by IR and NMR, and UV–visible spectra of (1) were studied in different solvents and acidic media.     

Crystal Structure Determination of Nickel (2,2-Dipyridyl) Sulphate Hexahydrate [Ni(C10H8N2) · 4 H2O]SO4 · 2H2O

[Ni(C₁₀H₈N₂) · 4 H₂O]SO₄ · 2 H₂O, Mr = 418.7, monoclinic, P1 , a = 7.781(3), b = 9.421(3), c = 11.457(4) Å, α = 87.54(2)º, β = 96.40(2)º, γ = 102.58(2)º, ν = 814.5 Å, D_x = 1.26 g/cm³, Z = 2, (MoKx) = 0.71073 Å, μ = 7.0 cm⁻¹: T = 23 °C, R = 0.047 for 2139 reflections having intensities greater than 36. The structure was solved using the Patterson heavy-atom method and the remaining atoms were located in succeeding difference Fourier syntheses. The structure was then refined by full matrix least-squares using anisotropic temperature factors. Hydrogen atoms were located and their positions and isotropic parameters were refined.     

Crystal structure of [Mn2(III)(salpa)2Cl2(H2O)2] (H2salpa = 1-(salicylaldeneamino)-3-hydroxypropane)

The manganese complex, (Mn₂(III)(salpa)₂Cl₂(H₂O)₂], has been prepared and its structure determined using x-ray crystallography. The dimer is a di-₂-alkoxo complex which is a six-coordinate manganese dimer with unsupported alkoxide bridges and a rare example of a chloride- and water-containing manganese dimer. The complex crystallizes in the monoclinic space group P2₁/c with a = 9.315(5), b = 11.130(4), c = 11.637(5) Å, = 104.33(3)°, V = 1169.0(9) ų, and Z = 2. The structure comprises discrete binuclear clusters in which the metal atoms are bridged by two alkoxo oxygens of the salpa^2– ligands. The Mn—O and Mn—N distances are in good agreement with those found for other manganese(III) Schiff base complexes. The Mn—Cl and Mn—O3 distances are 2.585(2) and 2.371(2) Å, respectively, and the Mn ··· Mn distance is 3.001(1) Å. In the crystal, there are two types of hydrogen bonding between the H₂O molecule and the Cl atom with Cl ··· H(H₂O) distance of 2.33(6) (intramolecule: –1 + x, y, –1 + z) and 2.68(6) Å (intermolecule: –1 + x, 0.5–y, –0.5 + z).     

Crystal structures of two platinum-bipyrimidine complexes: Pt(bpm)Cl2·dmf and Pt(bpm)(dmso)(SO4)·H2O

Red Pt(bpm)Cl₂·dmf forms a stacked structure which has Pt…Pt separations of 3.423(2) A and 3.447(2) Å with Pt…Pt…Pt angles of 155.39(3)^o. The unit cell isP-1, witha=6.712(4) A,b=10.0765(6) Å,c=11.551(3) Å, α=106.732(12)^o, β=103.65(4)^o, γ=90.46(3)^o, andZ=2. The structure refined to anR(F) of 0.046 using 181 parameter and 2165 reflections withI>1σ(I). The yellow complex Pt(bpm)(dmso)(SO₄)·H₂O does not stack in the solid state: the shortest Pt…Pt separation is 4.638(2) Å. The unit cell is alsoP-1, witha=8.060(3) A,b=9.560(3) A,c=9.7534(18) Å, α=90.62(2)^o, β=99.43(3)^o, γ=90.66(3)^o, andZ=2. The structure refined to anR(F) of 0.039 using 208 parameters and 3689 reflections withI>1σ(l).     

Synthesis and X-ray crystal structure studies of 1-ethyl-3-(2-chlorophenyl)-1,2,3-triazolium perchlorate

The isolation of stable carbenes of the Arduengo (1a) and Wanzlick (2a) type has prompted us to look for stable nitrenium ions of the related structural type 1-ethyl-3-(2-chloropenyl)-1,2,3-triazolium perchlorate (6⁺ClO₄ ^–). The title compound was synthesized and the structure was investigated by X-ray crystallography. It crystallizes in the monoclinic space group P2 ₁/n with cell parameters a = 7.066(4) Å, b = 27.680(6) Å, c = 7.486(2) Å, = 111.22(3)°, and Z = 4. The structure exhibits arrangement of the molecules with intermolecular hydrogen bonds within the layers.     

The Crystal and Molecular Structure of 1,8-Dioxo-9- (o-nitrophenyl)-1,2,3,4,5,6,7,8-octahydroxanthene

The crystal structure of the title compound is described. The compound crystallizes in monoclinic space group P21/a with Z=4. The unit cell dimensions are a = 10.809(2), b = 9.998(2) and c = 14.855(3) Å, V = 1592(1) ų, D_cal = 1.399 g/cm³. The central ring of the octahydroxanthene moiety is slightly folded and the two outer rings are in sofa conformations. Due to the p-conjugation there is an electron delocalized stretch. The phenyl ring of the 2-nitrophenyl substituent is perpendicular to the octahydroxanthene ring system.     

X-ray diffraction structure of (5S)-3,4-dichloro-5-menthoxy-2(5H)-furanone

The structure of (5S)-3,4-dichloro-5-menthoxy-2(5H)-furanone is reported. The title compound crystallizes in the monoclinic space group P2₁: a = 6.650(2) Å, b = 8.038(3) Å, c = 14.858(8) Å, = 97.01(3), V = 788.3(6) ų, Z = 2, R = 0.0718, R _w = 0.0795 for 735 observed reflections with I > 3 (I), and the absolute configuration at C-5 of the furanone ring is shown to be (S).     

X-ray structure analysis of 3β-hydroxy-4-(1,4-oxazin-4-yl)-androstane (C31H54NO2)

The crystal structure of 3β-hydroxy-4-(1,4-oxazin-4-yl)-androstane (C₃₁H₅₄NO₂) has been determined by X-ray crystallographic techniques. The compound crystallizes in the orthorhombic space group P2₁2₁2 with the following unit-cell parameters: a = 7.124(1) Å, b = 10.127(1) Å, c = 40.660(1) Å, V = 2933.4(1) ų, and Z = 4. The structure has been solved by direct methods and refined to an R factor of 0.067. Three six-membered rings, A, C, and E, exist in the chair conformation, while the ring B adopts a distorted half-chair conformation. The five-membered ring, D, has a distorted envelope conformation. The crystal structure is stabilized by strong intermolecular O-H...O hydrogen bonds.     

X-ray diffraction and total 1H and 13C NMR assignment of (RS)-5,6-dihydro-7,8-dimethoxy-5-methyl-6-(2-oxopropyl)-(2,3-methylenedioxyphenyl)-[c]-phenanthridine ((RS)-6-acetonyldihydrochelerythrine)

The X-ray diffraction structure of (RS)-5,6-dihydro-7,8-dimethoxy-5-methyl-6-(2-oxopropyl)-(2,3-methylenedioxyphenyl)-[c]-phenanthridine ((RS)-6-acetonyldihydrochelerythrine), isolated as an artifact from Bocconia Arborea, is reported. This compound crystallizes as orthorhombic system, space group Pna2₁, with a = 13.216(2) Å, b = 7.6547(10) Å, c = 20.096(3) Å. The phenanthridine central ring presents a distorted boat conformation, which gives rise to two planes with 21.30° between them. The acetonyl group at the six position forms weak C — H O and C — H -ring interactions. The title compound was completely characterized in solution by ¹H and ¹³C and 2D NMR experiments.     

X-ray crystallographic determination of the structure and conformation of 7-(1-acetoxy-1-methylethyl)-4a-methyl-octahydro-2(3H)-naphthalenone

The crystal structure of 7-(1-acetoxy-1-methylethyl)-4a-methyl-octahydro-2(³H)-naphthalenone, C₁₆H₂₄O₃ has been determined by X-ray diffraction. The crystals are orthorhombic, P2₁2₁2₁,a=5.938(2),b=12.081(4),c=21.607(7) Å,Z=4. The structure was solved by direct methods, and refined to an R value of 0.062 for 1013 nonzero independent amplitudes. Ring A has the C(6) distorted sofa conformation whereas the B ring possesses the slightly deformed chair conformation. The side chain in the C(10) position is oriented in relation to the plane of the B ring.The nomenclature of IUPAC for the name of compound in the title is applied. However, for simplicity reason numbers of atoms in the paper follow Fig. 1.     

1-[2-(p-Tolyl)-1-diazenyl]-3-({3-[2-(p-tolyl)-1-diazenyl] perhydrobenzo[d]imidazol-1-yl}methyl)perhydrobenzo[d]imidazole: synthesis,characterization and X-ray crystal structure

1-[2-(p-Tolyl)-1-diazenyl]-3-({3-[2-(p-tolyl)-1-diazenyl]perhydrobenzo[d]imidazol-1-yl}methyl)perhydrobenzo[d]imidazole(1) has been synthesized by reactionof a mixture of 1,2-diaminocyclohexane and formaldehyde withp-toluene diazonium chloride inaqueous solution. The product has been characterized by IR and NMRspectroscopy and elemental analysis. A crystal grown from solution ina mixed solvent system of ethyl acetate and hexanes was analyzed byX-ray crystallography. The solution of the crystal structure of(1) is important in establishing theconnectivity of this molecule and other compounds of similarstructure. The crystal structure of (1) is compared with the previously reportedstructure of the p-cyano analogue(2). Compounds (1) and (2)differ principally in the relative orientation of the heterocyclicrings; in (1), the molecule has adistinct V-shape, whereas compound (2) adopts a more extended conformation.Significant conjugation within the triazene moieties is evident inboth (1) and (2), as manifested in the N465=N andN–N bond lengths. The conjugation is greater in (2) due to the extended conjugation through tothe nitrile group. The title compound (1){C₂₉H₄₀N₈}crystallizes in the monoclinic, space group C2/c, with lattice constants: a = 30.532(6) ?,b =5.9050(12) ?, c= 15.463(3) ?, α = 90°,β = 99.94(3)°, γ = 90°,V =2746.0(10) ?³, Z = 4, D _c =1.209 mg m⁻³,F(000) = 1076, R ₁ = 0.0785,wR ₂= 0.1877.     

Synthesis and Crystal Structure of a Overall Covalent 3‐D Carboxylate‐bridged Silver(I) Polymer [Ag2(bea)]n [H2bea = (carboxymethyl‐amino) ‐acetic acid]

A polymeric silver(I) complex of (carboxymethyl‐amino)‐acetic acid (H₂bea) has been hydrothermally synthesized and characterized by single‐crystal X‐ray diffraction, which features a very interesting structure. The complex crystallizes in the orthorhombic crystal system, space group Pbca, with cell constants a = 7.050(3) Å, b = 9.649(7) Å, c = 19.65(2) Å, Z = 4. The structure was solved and refined to R = 0.0599 (wR = 0.1710). In the structure of this polymer, there are μ‐carboxylate‐bridged Ag(I) dimeric structural subunits, which are interlinked by bea^2‐ ligands and the interaction between adjacent silver ions into an overall covalent three‐dimensional framework.     

Synthesis,Characterization, and Crystal Structure of (2<Emphasis Type="Italic">E</Emphasis>)-3-(4-Fluorophenyl)-1-(2-hydroxyphenyl)prop-2-en-1-one

The title chalcone, of formula C₁₅H₁₁F₁O_2, crystallized in the orthorhombic space group P2₁2₁2₁ (# 19) with crystal parameters a?=?6.9998(8) Å, b?=?12.6740(15) Å, c?=?12.8997(15) Å, V?=?1144.4(2) ų, Z?=?4, determined at 100 K with MoKα radiation. The solid-state structure displays an intramolecular S(6) hydrogen bond and the crystal architecture is maintained by intermolecular F?H, O?H, and C?C short contacts. A DFT geometry optimization is compared with the experimental structure. As ¹⁹F NMR spectroscopy can be used for metabolic tagging of biologically active compounds (including chalcones), the solution-state ¹⁹F chemical shift and ¹³C¹⁹F coupling constants (ⁿJ) are also reported.

Graphical Abstract

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Crystal structure of 1-(2-hydroxyphenyl)-3-(2-thiomethoxyphenyl)-1,3-propanedione,C16H14O3S

The crystal structure of the enol tautomer of 1-(2-hydroxphenyl)-3-(2-thiomethoxyphenyl)-1,3-propanedione C₁₆H₁₄O₃S, was determined from X-ray crystallography. The finalR value was 5.99% based on 1945 unique observed reflections. The crystals are monoclinic,P2₁/c, witha=7.406(6),b=8.585(6),c=21.992(4) Å,=93.42(2),D _c =1.36 g cm^–3 forz=4. The compound is present in the solid state as a unique enol tautomer.There are two short, intramolecular OO contacts of 2.553(4) and 2.577(4) Å. Both the phenol and the enol H atoms are asymmetrically located with respect to the O atoms.     

Copper(II) bis [2-((E)-2-(pyrid-2-yl)ethylimino)methyl)-6-bromo-4-chlorophenolate]

A new complex CuL ₂ [HL = 2-((E)-(2-(pyridin-2-yl)ethylimino)methyl)-6-bromo-4-chlorophenol] was synthesized, and its structure (C₂₈H₂₂Br₂Cl₂CuN₄O₂, Mr = 740.76) was determined by single-crystal X-ray diffraction analysis. The crystal belongs to the triclinic system, space group $P\bar 1$ , with a = 5.157(6), b = 12.090(1), c =12.310(1) Å, α = 113.962(2)°, β = 96.7910(10)°, γ = 90.0300(10)°, V = 695.4(8) ų, Z = 1, R = 0.0481. The complex molecules are linked via the weak C-H...N hydrogen bonds, leading to the formation of one dimension (1D) chains along the a axis.     

9-(2-Methylphenyl)-3,4,5,6,9,10-hexa- hydroxanthene-1,8(2H,7H)-dione

Several 9-(2-R phenyl)xanthenediones have been synthesized and the x-ray diffraction structure for the 2-methylphenyl derivative (4b) has been determined. This compound crystallizes in the monoclinic system, space group P2₁/n, with a = 11.729 (3), b = 9.674 (3), c = 14.628 (4) Å, and = 106.30°. It presents a partially hydrogenated xanthene system in distorted boat conformation for the heterocyclic central ring, and an almost ideal envelope conformation for the outer rings. The aromatic substituent at the ninth position is at 84° in angle with the xanthene system.     

Methyl 4-((E)-2-{3-[(3-{ (E)-2-[4-(methoxycarbonyl)phenyl]- 1-diazenyl}-5,5-dimethylhexahydro-1-pyrimidinyl)methyl]-5,5-dimethylhexahydro-1-pyrimidinyl-1-diazenyl) benzoate. X-ray crystal structure

Methyl 4-((E)-2-{3-[(3-{(E)-2-[4-(methoxycarbonyl)phenyl]-1-diazenyl}-5, 5-dimethyl hexahydro-1-pyrimidinyl)methyl]-5, 5- dimethylhexahydro-1- pyrimidinyl}-1- diazenyl) benzoate (1) has been synthesized by reaction of a mixture of formaldehyde and 2,2-dimethyl-1,3-propanediamine with p-methoxycarbonylbenzenediazonium chloride. The crystal structure of 1 has been determined by single crystal X-ray diffraction analysis. The crystals of 1 displayed problems of disorder; the asymmetric unit is built up by two independent molecules, which display disorder within a methoxycarbonyl group. The two independent molecules in the asymmetric unit are very similar, differing only slightly about the mutual orientation of the aryltriazenyl groups. With respect to the N–C–N bridge between the hexahydropyrimidinyl rings, the two equivalent fragments containing the triazene moieties are in a cis orientation. The N–N single bonds, in the range 1.319(4)–1.348(4) Å, and the N=N double bonds, in the range 1.255(5)–1.275(4) Å, indicate significant conjugations within the triazene moieties. All the hexahydropyrimidine six-membered rings adopt a chair conformation as shown by their puckering parameters. The crystal packing is determined only by simple van der Waals interactions. The crystal structure of 1 is compared with the previously reported structure of the unbranched hexahydropyrimidine analogue 2. Crystal data: 1 C29H40N8O4, triclinic, space group P-1, a = 13.9652(2), b = 14.2908(3), c = 16.6129(4) Å, = 97.279(1), = 90.872(1), = 107.385(1), V = 3133.6(1) ų, for Z = 4.     

Structure of 2-{2-[3-methyl-3-(2,4,6-trimethylphenyl) cyclobutyl]-2-oxoethyl}isoindole-1,3-dione

2-{2-[3-Methyl-3-(2,4,6-trimethylphenyl)cyclobutyl]-2-oxoethyl}isoindole-1,3-dione (C₂₄ H₂₅NO₃) was synthesized, and its crystal structure was determined by X-ray crystallographic techniques. The compound crystallizes in the triclinic space group P-1, with unit cell parameters: a = 14.109(9) Å, b = 14.130(8) Å, c = 12.152(6) Å, = 105.62(5)°, = 113.75(4)°, = 98.78(5)°, V = 2039.8(19) ų, D _c= 1.223 g/cm³, and Z = 4. The crystal structure has two crystallographically independent molecules, I and II. These molecules are held together by weak intermolecular C—H···O interactions, forming a continuous chain. The dihedral angles between the N-substituted phthalimide moiety and cyclobutane ring in molecules I and II are 60.37(14) and 68.18(18)°, respectively.