酞侧基聚芳醚砜的核磁共振研究──PES－C的氢谱归属及碳谱峰的确认

用１３Ｃ－ＮＭＲ谱和二维异核化学位移相关谱（ＨＥＴＣＯＲ）归属了酞侧基聚芳醚砜（ＰＥＳ－Ｃ）的１Ｈ－ＮＭＲ谱峰，并经二维同核化学位移相关谱（ＣＯＳＹ）验证．对原１３Ｃ－ＮＭＲ谱峰归属作了部分修正．二维同核及异核相关谱为ＰＥＳ－Ｃ的碳、氢核磁谱峰归属提供了重要信息．由ＰＥＳ－Ｃ的核磁谱图可见其链结构的规整性     

The photochemical rearrangement pathways of imidazoles: a theoretical study

The mechanisms of the two reaction pathways for the photochemical transformations of methyl substituted imidazoles (i.e., 1,4-dimethyl-imidazole and 1,4,5-trimethyl-imidazole) in their first excited state (1pi --> 1pi*) have been determined using the CASSCF (10-electron/8-orbital active space) and MP2-CAS methods with the 6-311(d) basis set. These two reaction pathways are denoted as the conical intersection path (path 1) and the internal cyclization-isomerization path (path 2). Our model investigations suggest that conical intersections play a crucial role in the photorearrangements of imidazoles. Additionally, the present theoretical findings suggest that photoisomerizations of imidazoles via path 1 should adopt the reaction path as follows: imidazole --> Franck-Condon region --> conical intersection --> photoproduct. Moreover, we have examined the alternative mechanism, the internal cyclization-isomerization path (path 2), which consists of a sequence of small geometric rearrangements. Our theoretical investigations suggest that for the photorearrangement of 1,4-dimethyl-imidazole both mechanisms are comparable. On the other hand, for the photorearrangement of 1,4,5-trimethyl-imidazole path 1 should be favored over path 2. Our present theoretical results agree with the available experimental observations.     

Harmonic Fourier beads method for studying rare events on rugged energy surfaces

We present a robust, distributable method for computing minimum free energy paths of large molecular systems with rugged energy landscapes. The method, which we call harmonic Fourier beads (HFB), exploits the Fourier representation of a path in an appropriate coordinate space and proceeds iteratively by evolving a discrete set of harmonically restrained path points-beads-to generate positions for the next path. The HFB method does not require explicit knowledge of the free energy to locate the path. To compute the free energy profile along the final path we employ an umbrella sampling method in two generalized dimensions. The proposed HFB method is anticipated to aid the study of rare events in biomolecular systems. Its utility is demonstrated with an application to conformational isomerization of the alanine dipeptide in gas phase.     

Proton NMR relaxation studies on several nitroxyl-water systems

Proton spin-lattice and spin-spin relaxation times of several nitroxyl radicals in aqueous solutions have been measured between 10 kHz and 90 MHz. There are two regions where the relaxation times of the solvent water protons are frequency dependent. It is possible to extract from these experimental data structural and dynamical parameters such as the number of solvated water protons and/or their mean lifetime in the first hydration sphere around the paramagnetic center. These results were found to differ considerably from corresponding data reported in the literature which have been deduced mainly from chemical shift measurements. To whom correspondence should be addressed.     

Generation of NH-azomethine imine intermediates through the 1,2-hydrogen shift of hydrazones and their intermolecular cycloaddition reaction with olefinic dipolarophiles

The thermal 1,2-hydrogen shift of the hydrazone generates the NH-azomethine imine intermediate in the 4-oxo-4H-pyrido[1,2-a]pyrimidine-3-carbaldehyde system under mild conditions. Therein, the resulting NH-azomethine imine should be stabilized by forming an internal hydrogen bond with the carbonyl oxygen at the 4-position. Its smooth stereoselective intermolecular cycloaddition reaction with olefinic dipolarophiles giving pyrazolidine derivatives is discussed.     

Obtaining reaction coordinates by likelihood maximization

We present a new approach for calculating reaction coordinates in complex systems. The new method is based on transition path sampling and likelihood maximization. It requires fewer trajectories than a single iteration of existing procedures, and it applies to both low and high friction dynamics. The new method screens a set of candidate collective variables for a good reaction coordinate that depends on a few relevant variables. The Bayesian information criterion determines whether additional variables significantly improve the reaction coordinate. Additionally, we present an advantageous transition path sampling algorithm and an algorithm to generate the most likely transition path in the space of collective variables. The method is demonstrated on two systems: a bistable model potential energy surface and nucleation in the Ising model. For the Ising model of nucleation, we quantify for the first time the role of nuclei surface area in the nucleation reaction coordinate. Surprisingly, increased surface area increases the stability of nuclei in two dimensions but decreases nuclei stability in three dimensions.     

The Reaction Pathway of Cellulose Pyrolysis to a Multifunctional Chiral Building Block: The Role of Water Unveiled by a DFT Computational Investigation

LAC (hydroxylactone (1R,5S)‐1‐hydroxy‐3,6‐dioxabicyclo[3.2.1]octan‐2‐one) is one of the most interesting products of the pyrolysis of cellulose and represents a useful chiral building block in organic synthesis. A computational investigation at the DFT level on the mechanism of formation of LAC shows that this species can be obtained following two reaction paths, path A and path B , starting from a well‐known pyrolysis product (ascopyrone P). A series of internal rearrangements involving in all cases a proton transfer leads directly to LAC ( path B ). An alternative path ( path A ) can be also followed. From this path, via a “gate” connecting the two reaction channels, it is possible to reach path B and form LAC. In both cases, the rate‐determining step of the process is the initial keto‐enol isomerization. We found that water, which is present in the reaction mixture, “catalyzes” the reaction by assisting the proton transfers present in all the steps of the process. In particular, water lowers the barrier of the rate‐determining step that becomes 40.9 kcal mol^?1 (79.4 kcal mol^?1 in the absence of water). The corresponding computed rate constant is 4.3×10 s^?1 at 500 °C, a value which is consistent with the presence of LAC in the absence of metal catalysts. The results of this study on the non‐catalyzed process underpin the important role played by water in the formation of pyrolysis products of cellulose where proton transfer is a key mechanistic step.     

Capturing a Pentacyclic Fragment-Based Library Derived from Perophoramidine: Their Design,Synthesis and Evaluation as Anticancer Compounds by DNA Double-Strand Breaks (DSB) and PARP-1 Inhibition

Herein we have reported the discovery of a pentacyclic building block comprised of fused indole-quinoline and piperidinone from the natural product perophoramidine as a formidable anticancer agent. The compounds were synthesized in six steps where the key steps involved a blue LED mediated intramolecular cyclopropanation of the indole intermediates and concomitant reduction of the associated aryl nitro moiety to nitroso in the molecule. Cytotoxicity screening of the compounds against an array of cancer cells that is, MCF7, HCT116 and A549 demonstrated 0.6 to 9 μM IC₅₀s by few of the compounds. γH2AX immunofluorescence assay of the two most potent molecules from the phenotypic screening with anti-γ-H2AX Alexa Fluor 488 antibody revealed extensive DNA damage of the A549 cells which indicated probable PARP inhibition (similar to Perophoramidine). Through molecular docking and molecular dynamic (MD) simulation studies the binding efficiency of our compounds with poly(ADP-ribose)polymerase 1 (PARP 1) enzyme was determined. Chemiluminescent PARP Assay with Histone-coated strips indicated that the most active compounds from the phenotypic screening induced PARP-1 inhibition with IC₅₀s of 1.3→1.5 μM.     

A theoretical insight into the reaction mechanism of photochemical transposition from pyrazole to imidazole

The mechanisms of the photochemical isomerization reactions were investigated by using a model system of 1,3,5-trimethylpyrazole ( 1) with the CASSCF (eight-electron/six-orbital active space) and MP2-CAS methods and the 6-311G(d) basis set. Three reaction pathways were examined in the present work. They are denoted as the ring-contraction-ring-expansion path (path I), the internal-cyclization-isomerization path (path II), and the conical-intersection path (path III). Our model investigations suggest that the preferred reaction route for the pyrazoles is as follows: reactant --> Franck-Condon region --> conical intersection --> photoproduct. In particular, the conical-intersection mechanism (path III) found in this work gives a better explanation than the previously proposed two other mechanisms (paths I and II). The theoretical findings also indicate that path III-1 should be favored over path III-2 from a kinetic point of view. This suggests that the quantum yield of 1,2,4-trimethylimidazole ( 2) should be greater than that of 1,2,5-trimethylimidazole ( 3), which supports the available experimental observations. Additionally, we propose a simple p-pi orbital topology model, which can be used as a diagnostic tool to predict the location of the conical intersections, as well as the geometries of the phototransposition products of various heterocycles.     

细胞内第二信使3',5'-环核苷酸酯质子迁移机理的理论研究

应用密度泛函理论B3LYP/6-31G**计算方法对气相中细胞内第二信使3¢,5¢-环核苷酸酯(cAMPm)质子迁移机理进行了理论研究,此外,在相同水平上模拟了水分子作催化剂的反应机理。计算结果表明cAMPm两种构象Bm 和Dm之间的转化经过一个环状过渡态,其中,两分子水参与的H 迁移反应的势能面最低,反应更容易进行。我们的计算结果为研究相关的磷酸二酯的H质子迁移反应提供了理论依据。     

O-N-Acyl migration in N-terminal serine-containing peptides: mass spectrometric elucidation and subsequent development of site-directed acylation protocols

The synthesis of a modified pentapeptide involving the palmitoylation of the hydroxyl group of a serine residue present at the N-terminal position is presented. An O-N-acyl shift was observed by LC/MS/MS, the two isobaric molecules exhibiting upon collisional activation dissociation (CAD) different fragmentation behaviours. The synthetic pathway was thereafter modified to control the palmitoylation site (O or N). The method was validated with another serine acylation (octanoylation). The evidenced mass spectrometric criteria could serve to decipher peptide post-translational modifications in proteomics.     

A combination of spectral re-alignment and BTEM for the estimation of pure component NMR spectra from multi-component non-reactive and reactive systems

The deconvolution of multi-component mixtures in NMR spectroscopy is a challenging problem due to the spectral non-linearities. In the present contribution, two data sets were studied (A) 10 samples of a four-component non-reactive mixture measured with ¹H, ¹³C, ¹⁹F, ³¹P NMR and (B) a three-solute cyclo-addition reaction measured with ¹³C NMR. Both data sets were treated with a re-alignment procedure to correct for the non-stationary chemical shifts, followed by band-target entropy minimization (BTEM) analysis. For data set A, quite good spectral estimates of the two hydrogen-containing species, four carbon-containing species, two fluorine-containing species and two phosphorus-containing species were obtained from the multi-component data. For data set B quite good spectral estimates of all three carbon-containing reactants were obtained as well as their relative concentration profiles. The present contribution using model systems indicates the usefulness of re-alignment procedures for correcting non-stationary characteristics, prior to self-modeling curve resolution (SMCR), and the potential for investigating more complex problems.     

From A to B in free energy space

The authors present a new method for searching low free energy paths in complex molecular systems at finite temperature. They introduce two variables that are able to describe the position of a point in configurational space relative to a preassigned path. With the help of these two variables the authors combine features of approaches such as metadynamics or umbrella sampling with those of path based methods. This allows global searches in the space of paths to be performed and a new variational principle for the determination of low free energy paths to be established. Contrary to metadynamics or umbrella sampling the path can be described by an arbitrary large number of variables, still the energy profile along the path can be calculated. The authors exemplify the method numerically by studying the conformational changes of alanine dipeptide.     

Cu-Pt-Au三元合金催化水煤气变换反应的密度泛函研究

利用密度泛函理论（DFT）研究了不同掺杂量的Cu-Pt-Au催化剂性质及水煤气变换反应（WGSR）在催化剂表面上的反应机理。首先对Cu-Au和Pt-Au二元催化剂的稳定性和电子活性进行研究,发现Pt-Au催化剂的协同效应较优,稳定性更优,结合能为77.15 eV,d带中心为-3.18 eV。当将Cu继续掺杂到Pt-Au合金中构成Cu-Pt-Au三元催化剂时,Cu₃-Pt₃-Au（111）结合能为77.99 eV,且d带中心为-3.05 eV,表明其具有较优的稳定性和电子活性。探讨了WGSR在Cu₃-Pt₃-Au（111）上的反应历程,氧化还原机理因CO氧化的能垒达到4.84 eV而不易进行。CHO和COOH两个中间体为竞争关系,且形成CHO中间物时的能垒较小,因此,反应相对容易按照甲酸机理进行。     

Thermally-Induced Intramolecular [4+2] Cycloaddition of Allylamino- or Allyloxy-Tethered Alkylidenecyclopropanes

A thermally-induced intramolecular [4+2] cycloaddition reaction of allylamino- or allyloxy-tethered alkylidenecyclopropanes has been reported in this paper, giving a new protocol for the rapid construction of polycyclic skeleton molecules in moderate to excellent yields with a broad substrate scope. On the basis of control experiments and DFT calculations, we disclosed that the reaction proceeded through a [4+2] cycloaddition and trace of water assisted 1,3-H shift process to give the target product.     

Role of bifurcation in the bond shifting of cyclooctatetraene

The present study of the cyclooctatetraene potential energy surface shows the presence of a bifurcation (valley ridge inflection point) in the intrinsic reaction coordinate path between the two transition states of D(8h) and D(4h) symmetries. This result is of capital importance for the correct understanding of the bond shifting and ring inversion processes in this compound.     

Study of the complexation of different methacrylates with cyclodextrins employing a combination of electrophoretic, chromatographic, and NMR-spectroscopic methods

The present study describes the application of capillary electromigration techniques; CEC and micellar EKC (MEKC), and the application of spectroscopic methods; 1H NMR and 1H NOESY spectroscopy to investigate interactions between CDs (alpha-CD, statistically methylated beta-CD, hydroxypropyl-beta-CD, and 2-hydroxypropyl-gamma-CD) and different methacrylates (adamantyl, isobornyl, cyclohexyl, and phenyl methacrylate). It is shown that these methods complement each other. While CD-mediated MEKC is a rapid screening technique for comparing complex stabilities in aqueous media, 1H NMR chemical shift analysis provides quantitative data for very strong methacrylate-CD complexes and CD-mediated CEC provides quantitative data for complexes with lower complex forming constants. CD-mediated MEKC did not prove to be suitable for the calculation of complex forming constants. Reasons are discussed. 1H NOESY spectra were used to study spatial relationships between host and guest atoms.     

Parallel iterative reaction path optimization in ab initio quantum mechanical/molecular mechanical modeling of enzyme reactions

The determination of reaction paths for enzyme systems remains a great challenge for current computational methods. In this paper we present an efficient method for the determination of minimum energy reaction paths with the ab initio quantum mechanical/molecular mechanical approach. Our method is based on an adaptation of the path optimization procedure by Ayala and Schlegel for small molecules in gas phase, the iterative quantum mechanical/molecular mechanical (QM/MM) optimization method developed earlier in our laboratory and the introduction of a new metric defining the distance between different structures in the configuration space. In this method we represent the reaction path by a discrete set of structures. For each structure we partition the atoms into a core set that usually includes the QM subsystem and an environment set that usually includes the MM subsystem. These two sets are optimized iteratively: the core set is optimized to approximate the reaction path while the environment set is optimized to the corresponding energy minimum. In the optimization of the core set of atoms for the reaction path, we introduce a new metric to define the distances between the points on the reaction path, which excludes the soft degrees of freedom from the environment set and includes extra weights on coordinates describing chemical changes. Because the reaction path is represented by discrete structures and the optimization for each can be performed individually with very limited coupling, our method can be executed in a natural and efficient parallelization, with each processor handling one of the structures. We demonstrate the applicability and efficiency of our method by testing it on two systems previously studied by our group, triosephosphate isomerase and 4-oxalocrotonate tautomerase. In both cases the minimum energy paths for both enzymes agree with the previously reported paths.     

CuSO4-catalyzed diazo decomposition in water: a practical synthesis of β-keto esters

CuSO₄ was found to be an efficient catalyst for the diazo decomposition of β-hydroxy α-diazoesters in water. 1,2-H shift occurred efficiently to give β-keto esters in high yields. No O-H bond insertion products were identified.     

Time shift correction in second-order liquid chromatographic data with iterative target transformation factor analysis

When the generalized rank annihilation method (GRAM) is applied to liquid chromatographic data with diode-array detection, an important problem is the time shift of the peak of the analyte in the test sample. This problem leads to erroneous predictions. This time shift can be corrected if a time window is selected so that the chromatographic profile of the analyte in the test sample is trilinear with the peak of the analyte in the calibration sample. In this paper we present a new method to determine when this condition is met. This method is based on the curve resolution with iterative target transformation factor analysis (ITTFA). The calibration and test matrices are independently decomposed into profiles and spectra, and aligned before GRAM is applied. Here we study two situations: first, when the calibration matrix has one analyte and second, when it has two analytes. When the calibration matrix has two analytes, we selectively determine the time window for the analyte to be quantified. There were considerably fewer prediction errors after correction.