Geometric isomers of chloro(6‐methyl‐1,4,8,11‐tetraazacyclotetradecane‐6‐amine)cobalt(III) tetrachlorozincate(II)

The crystal structures of a pair of cis and trans isomers of the macrocyclic chloro­penta­amine title complex, as their tetra­chloro­zincate(II) salts, [CoCl(C₁₁H₂₇N₅)][ZnCl₄], are re­ported. The two distinct isomeric forms lead to significant variations in the Co—N bond lengths and, furthermore, hydrogen bonding between the complex ions is influenced by the folded (cis) or planar (trans) conformations of the coordinated ligand.     

Cyano­cobalt(III) complexes of penta‐ and tetra­dentate‐coordinated macrocyclic hexa­amines

The pendent‐arm macrocyclic hexa­amine trans‐6,13‐dimethyl‐1,4,8,11‐tetra­aza­cyclo­tetra­decane‐6,13‐diamine (L) may coordinate in tetra‐, penta‐ or hexa­dentate modes, depending on the metal ion and the synthetic procedure. We report here the crystal structures of two pseudo‐octa­hedral cobalt(III) complexes of L, namely sodium trans‐cyano­(trans‐6,13‐dimethyl‐1,4,8,11‐tetra­aza­cyclo­tetra­decane‐6,13‐diamine)cobalt(III) triperchlorate, Na[Co(CN)(C₁₃H₃₀N₆)](ClO₄)₃ or Na{trans‐[CoL(CN)]}(ClO₄)₃, (I), where L is coordinated as a penta­dentate ligand, and trans‐dicyano­(trans‐6,13‐dimethyl‐1,4,8,11‐tetra­aza­cyclo­tetra­decane‐6,13‐diamine)cobalt(III) trans‐dicyano­(trans‐6,13‐dimethyl‐1,4,8,11‐tetra­aza­cyclo­tetra­decane‐6,13‐diaminium)cobalt(III) tetra­perchlorate tetra­hydrate, [Co(CN)₂(C₁₄H₃₂N₆)][Co(CN)₂(C₁₄H₃₀N₆)](ClO₄)₄·4H₂O or trans‐[CoL(CN)₂]trans‐[Co(H₂L)(CN)₂](ClO₄)₄·4H₂O, (II), where the ligand binds in a tetra­dentate mode, with the remaining coordination sites being filled by C‐­bound cyano ligands. In (I), the secondary amine Co—N bond lengths lie within the range 1.944 (3)–1.969 (3) Å, while the trans influence of the cyano ligand lengthens the Co—N bond length of the coordinated primary amine [Co—N = 1.986 (3) Å]. The Co—CN bond length is 1.899 (3) Å. The complex cations in (II) are each located on centres of symmetry. The Co—N bond lengths in both cations are somewhat longer than in (I) and span a narrow range [1.972 (3)–1.982 (3) Å]. The two independent Co—CN bond lengths are similar [1.918 (4) and 1.926 (4) Å] but significantly longer than in the structure of (I), again a consequence of the trans influence of each cyano ligand.     

Bis(3‐amino­pyridine‐κN)(4,4′‐di­methyl‐2,2′‐bipyridine‐κ2N,N′)(per­chlorato‐κO)copper(II) per­chlorate

The title compound, [Cu(ClO₄)(C₅H₆N₂)₂(C₁₂H₁₂N₂)]ClO₄, was prepared by in situ partial ligand substitution between 3‐amino­pyridine and 4,4′‐dimethyl‐2,2′‐bipyridine at room temperature. The central copper(II) ion is five‐coordinated by one bidentate 4,4′‐dimethyl‐2,2′‐bipyridine mol­ecule, two monodentate pyridine‐coordinated 3‐amino­pyridine mol­ecules and one apical O atom from the perchlorate counter‐ion. Inter­molecular N—H⋯O and C—H⋯O hydrogen‐bonding inter­actions form a hydrogen‐bond‐sustained network.     

μ‐1,4‐Benzenedicarboxylato‐bis[trans‐aqua(1,4,8,11‐tetraazacyclotetradecane)nickel(II)] diperchlorate forms a three‐dimensional hydrogen‐bonded framework

The title compound, [Ni₂(C₈H₄O₄)(C₁₀H₂₄N₄)₂(H₂O)₂](ClO₄)₂, contains two independent octahedral Ni^II centres with trans‐NiN₄O₂ chromophores. The bridging benzene­dicarboxyl­ate ligand is bonded to the two Ni atoms, each via one O atom of each carboxyl­ate, while the other O atom participates in an intramolecular N—H?O hydrogen bond, forming an S(6) motif. The cations are linked to the perchlorate anions via O—H?O and N—H?O hydrogen bonds [O?O 2.904 (6) and 2.898 (6) Å; O—H?O 158 (6) and 165 (6)°; N?O 3.175 (7) and 3.116 (7) Å; N—H?O 168 and 166°] to form molecular ladders. These ladders are linked by further O—H?O and N—H?O hydrogen bonds [O?O 2.717 (6) and 2.730 (5) Å; O—H?O 170 (4) and 163 (6)°; N?O 3.373 (7) and 3.253 (7) Å; N—H?O 163 and 167°] to form a continuous three‐dimensional framework. The perchlorate anions both participate in three hydrogen bonds, and both are thus fully ordered.     

(12‐Hydro­xy­methyl‐5,5,7,12,14‐penta­methyl‐1,4,8,11‐tetra­aza­cyclo­tetra­decane‐N‐acetato‐N,N′,N′′,N′′′,O,O′)cobalt(III) chloride perchlorate monohydrate

In the title compound, [Co(C₁₈H₃₇N₄O₃)](ClO₄)Cl·H₂O, the Co^III ion has a distorted octahedral geometry, with four N atoms and two O atoms constituting the coordination sphere. The crystal structure is stabilized by a three‐dimensional network of hydrogen bonds.     

3,4‐Di‐2‐pyridyl‐1,2,5‐oxadiazole and its perchlorate salt

In 3,4‐di‐2‐pyridyl‐1,2,5‐oxadiazole (dpo), C₁₂H₈N₄O, each mol­ecule resides on a twofold axis and inter­acts with eight neighbours via four C—H⋯N and four C—H⋯O inter­actions to generate a three‐dimensional hydrogen‐bonded architecture. In the perchlorate analogue, 2‐[3‐(2‐pyrid­yl)‐1,2,5‐oxadiazol‐4‐yl]pyridinium perchlorate, C₁₂H₉N₄O⁺·ClO₄⁻ or [Hdpo]ClO₄, the [Hdpo]⁺ cation is bisected by a crystallographic mirror plane, and the additional H atom in the cation is shared by the two pyridyl N atoms to form a symmetrical intra­molecular N⋯H⋯N hydrogen bond. The cations and perchlorate anions are linked through C—H⋯O hydrogen bonds and π–π stacking inter­actions to form one‐dimensional tubes along the b‐axis direction.     

trans‐Di­aqua­bis(5‐carboxy‐1H‐imidazole‐4‐carboxyl­ato‐κ2N3,O4)­cobalt(II) 4,4′‐bi­pyridine solvate

In the title compound, [Co(C₅H₃N₂O₄)₂(H₂O)₂]·C₁₀H₈N₂, the Co atom is trans‐coordinated by two pairs of N and O atoms from two monoanionic 4,5‐di­carboxy­imidazole ligands, and by two O atoms from two coordinated water mol­ecules, in a distorted octahedral geometry. The 4,4′‐bi­pyridine solvent molecule is not involved in coordination but is linked by an N—H⋯N hydrogen bond to the neutral [Co(C₅H₃N₂O₄)₂(H₂O)₂] mol­ecule. Both mol­ecules are located on inversion centers. The crystal packing is stabilized by N—H⋯N and O—H⋯O hydrogen bonds, which produce a three‐dimensional hydrogen‐bonded network. Offset π–π stacking interactions between the pyridine rings of adjacent 4,4′‐bi­pyridine molecules were observed, with a face‐to‐face distance of 3.345 (1) Å.     

The perchlorate salt of the novel diprotonated dinucleating ligand 1,3‐bis­{[2‐(2‐pyridinio)eth­yl][2‐(2‐pyrid­yl)eth­yl]amino}benzene

In the title salt, 1,3‐bis­{[2‐(2‐pyridinio)eth­yl][2‐(2‐pyrid­yl)ethyl]amino}benzene diperchlorate dihydrate, C₃₄H₃₈N₆²⁺·2ClO₄⁻·2H₂O, the cation contains two ethyl­pyrid­yl and two ethyl­pyridinium pendant pairs anchored to the two N atoms of 1,3‐phenyl­enediamine. The pyrid­yl and pyridinium N atoms are flanked by a mol­ecule of water through strong hydrogen‐bonding inter­actions [N—H⋯O = 2.762 (6) and 2.758 (6) Å, and O—H⋯N = 2.834 (6) and 2.839 (6) Å]. The water mol­ecules have weak hydrogen‐bonding inter­actions with the perchlorate anions as well. One of the perchlorate anions is severely disordered.     

{μ‐N,N′‐Bis[3‐(dimethyl­amino)prop­yl]­oxamidato(2–)‐κ6N,N′,O′:N′′,N′′′,O}­bis­[(1H‐imidazole‐κN3)(methanol‐κO)copper(II)] bis­(perchlorate)

The structure of the title compound, [Cu₂(C₁₂H₂₄N₄O₂)(C₃H₄N₂)₂(CH₄O)₂](ClO₄)₂ or [Cu₂(dmoxpn)(HIm)₂(CH₃OH)₂](ClO₄)₂, where dmoxpn is the dianion of N,N′‐bis­[3‐(dimethyl­amino)prop­yl]oxamide and HIm is imidazole, consists of a centrosymmetric trans‐oxamidate‐bridged copper(II) binuclear cation, having an inversion centre at the mid‐point of the central C—C bond, and two perchlorate anions. The Cu^II atom has square‐pyramidal coordination geometry involving two N atoms and an O atom from the dmoxpn ligand, an N atom from an imidazole ring, and an O atom from a methanol mol­ecule. The crystal structure is stabilized by O—H⋯O, N—H⋯O and C—H⋯O hydrogen bonds and imidazole π–π stacking inter­actions to form a three‐dimensional supra­molecular array.     

(1,3‐Dimethylimidazolidine‐2‐selone‐κSe)bis(1,10‐phenanthroline‐κ2N,N′)copper(II) bis(perchlorate) and bis(2,2′‐bipyridyl‐κ2N,N′)(imidazolidine‐2‐thione‐κS)copper(II) bis(perchlorate)

In the first title salt, [Cu(C₁₂H₈N₂)₂(C₅H₁₀N₂Se)](ClO₄)₂, the Cu^II centre occupies a distorted trigonal–bipyramidal environment defined by four N donors from two 1,10‐phenanthroline (phen) ligands and by the Se donor of a 1,3‐dimethylimidazolidine‐2‐selone ligand, with the equatorial plane defined by the Se and by two N donors from different phen ligands and the axial sites occupied by the two remaining N donors, one from each phen ligand. The Cu—N distances span the range 1.980 (10)–2.114 (11) Å and the Cu—Se distance is 2.491 (3) Å. Intermolecular π–π contacts between imidazolidine rings and the central rings of phen ligands generate chains of cations. In the second salt, [Cu(C₁₀H₈N₂)₂(C₃H₆N₂S)](ClO₄)₂, the Cu^II centre occupies a similar distorted trigonal–bipyramidal environment comprising four N donors from two 2,2′‐bipyridyl (bipy) ligands and an S donor from an imidazolidine‐2‐thione ligand. The equatorial plane is defined by the S donor and two N donors from different bipy ligands. The Cu—N distances span the range 1.984 (6)–2.069 (7) Å and the Cu—S distance is 2.366 (3) Å. Intermolecular π–π contacts between imidazolidine and pyridyl rings form chains of cations. A major difference between the two structures is due to the presence in the second complex of two N—H...O hydrogen bonds linking the imidazolidine N—H hydrogen‐bond donors to perchlorate O‐atom acceptors.     

μ‐Oxo‐bis{[(6‐hydroxy­methyl‐2‐pyridyl­methyl)­bis(2‐pyridyl­methyl)­amine‐κ5N,N′,N′′,N′′′,O]­iron(III)} tetrakis­(perchlorate)

The novel μ‐oxo‐diiron complex [Fe₂O(BPHPA)₂](ClO₄)₄ [BPHPA is (6‐hydroxy­methyl‐2‐pyridyl­methyl)­bis(2‐pyridyl­methyl)­amine, C₁₉H₂₀N₄O], contains a binuclear centrosymmetric [Fe₂O(BPHPA)₂]⁴⁺ cation (the bridging O atom lies on an inversion centre) and four perchlorate anions. Each iron ion is coordinated by four N atoms [Fe—N = 2.117 (5)–2.196 (5) Å] and one O atom [Fe—O = 2.052 (5) Å] from a BPHPA ligand, and by one bridging oxo atom [Fe—O = 1.7896 (9) Å], forming a distorted octahedron. There are hydrogen bonds between the hydroxy group and perchlorate O atoms [O—H·O = 2.654 (7) Å].     

Bis[bis­(methoxy­carbimido)amine‐κ2N,N′]bis­(perchlorato‐κO)copper(II) bis­[bis­(methoxy­carbimido)amine‐κ2N,N′]bis­(methanol‐κO)copper(II) bis­(perchlorate) methanol disolvate

The title compound, [Cu(ClO₄)₂(C₄H₉N₃O₂)₂][Cu(C₄H₉N₃O₂)₂(CH₄O)₂](ClO₄)₂·2CH₃OH, comprises two independent Cu^II species lying on different inversion sites. In the Cu complexes, a distorted octa­hedral geometry arises (from basic square‐planar N₄ coordination) from the weak coordination of two perchlorate ions (as Cu—O) in one species and two methanol mol­ecules in the other (also as Cu—O). Inter­actions between the O atoms of the perchlorate anions or methanol groups and the imide or amine NH groups afford an extensive inter­molecular hydrogen‐bonding network.     

Diaquatetrakis(tert‐butyl isocyanide)cobalt(II) bis(perchlorate): an example of cobalt(II) coordinated by only four alkyl isocyanide ligands

The title compound, [Co(C₅H₉N)₄(H₂O)₂](ClO₄)₂, crystallizes in the monoclinic space group C2/m. The cation has space‐group‐imposed 2/m symmetry, while the perchlorate ion is disordered about a mirror plane. The two slightly non‐equivalent Co—C bonds [1.900 (3) and 1.911 (3) Å] form a rectangular plane, with a C—Co—C bond angle of 86.83 (11)°, and the linear O—Co—O C₂ axis is perpendicular to this plane. The C[triple‐bond]N bond lengths are 1.141 (4) Å and the Co—C[triple‐bond]N and C[triple‐bond]N—C angles average 175.5 (4)°. The perchlorate counter‐ions are hydrogen bonded to the water molecules. The title compound is the first example of four alkyl isocyanide ligands coordinating Co^II upon initial reaction of Co(ClO₄)₂·6H₂O/EtOH with alkyl isocyanide. In all other known examples, five alkyl isocyanide molecules are coordinated, as in [(RNC)₅Co—Co(CNR)₅](ClO₄)₄ (R = Me, Et, CHMe₂, CH₂Ph, C₄H₉‐n or C₆H₁₁) or [Co(CNC₈H₁₇‐t)₅](ClO₄)₂. This complex, therefore, is unique and somewhat unexpected.     

Diastereoisomeric β‐ethyl aspartate–cobalt(III) complexes: Λ(+)578‐ and Δ(−)578‐bis(ethane‐1,2‐diamine)[β‐ethyl (S)‐aspartato]cobalt(III) bis(perchlorate) monohydrate

The structures of the diastereoisomers Λ(+)₅₇₈‐, (I), and Δ(−)₅₇₈‐bis(ethane‐1,2‐diamine)[β‐ethyl (S)‐aspartato‐κ²N,O¹]cobalt(III) bis(perchlorate) monohydrate, (II), both [Co(C₆H₁₀N₂O₄)(C₂H₈N₂)₂](ClO₄)₂·H₂O, are compared. In both structures, the ester group of the amino acid side chain is engaged only in intramolecular hydrogen bonding to coordinated amine groups. This interaction is stronger in (I) and correlates with previously observed diastereoisomeric equilibrium ratios for related metal complex systems in aqueous media. The two perchlorate anions of (II) are located on twofold axes. Both perchlorates in (I) and one of the perchlorates in (II) are affected by disorder. Both structures exhibit extensive three‐dimensional hydrogen‐bonding networks.     

Synthesis,structural characterization,EPR spectroscopy and Hirshfeld surface analysis of a novel Cu2+‐doped 3,14‐diethyl‐2,13‐diaza‐6,17‐diazoniatricyclo[16.4.0.07,12]docosane bis(perchlorate)

Cyclam derivatives and their metal complexes have been found to exhibit an anti‐HIV effect and stimulate the activity of stem cells from bone marrow. The strength of their binding to the CXCR4 receptor correlates with anti‐HIV and stem‐cell activities. Knowledge of the conformation and crystal packing of various macrocyclic metal complexes has become important in developing new effective anti‐HIV drugs. The synthesis and preparation of single crystals of a new Cu²⁺‐doped macrocyclic compound, (3,14‐diethyl‐2,6,13,17‐tetraazatricyclo[16.4.0.0^7,12]docosane)copper(II) bis(perchlorate)–3,14‐diethyl‐2,13‐diaza‐6,17‐diazoniatricyclo[16.4.0.0^7,12]docosane bis(perchlorate) (0.69/0.31), {[Cu(C₂₂H₄₄N₄)](ClO₄)₂}_0.69·(C₂₂H₄₆N₄²⁺·2ClO₄^?)_0.31, is reported. Characterization by X‐ray diffraction analysis shows that the asymmetric unit contains half of a centrosymmetric molecule. The macrocyclic ligand in the compound adopts the most stable trans‐III conformation. The Cu—N distances of 2.015 (3) and 2.047 (3) Å are normal, but the long axial Cu—O bond of 2.795 (3) Å may be due to a combination of the Jahn–Teller effect and the strong in‐plane ligand field. The crystal structure is stabilized by hydrogen bonding between secondary N—H groups, the N atoms of the macrocycle and the O atoms of the perchlorate anions. Hirshfeld surface analysis with 2D (two‐dimensional) fingerprint plots indicates that the main contributions to the crystal packing are from H…H (58.0%) and H…O/O…H (41.9%) interactions. Electron paramagnetic resonance (EPR) properties are also described.     

Tris­(ethyl­enedi­amine‐N,N′)cobalt(III) oxalate perchlorate dihydrate

The crystallization behavior of the title compound, [Co(C₂H₈N₂)₃](C₂O₄)(ClO₄)·2H₂O, has been studied in order to evaluate the effect of the counter‐anion on the crystalline structures of [Co(en)₃](C₂O₄)·X (en = ethyl­enedi­amine). Two‐dimensional intermolecular hydrogen‐bonding networks are formed between the amine protons of the [Co(en)₃]³⁺ cations and the O atoms of the oxalate anions. Perchlorate and water mol­ecules fill in the channels between the two‐dimensional networks and form hydrogen‐bonding interactions with the two‐dimensional layers, thus constructing a three‐dimensional hydrogen‐bonding network.     

trans‐Diaquabis(nicotinamide‐κN)bis(salicylato‐κO)cobalt(II)

The title compound, [Co(C₇H₅O₃)₂(C₆H₆N₂O)₂(H₂O)₂], forms a three‐dimensional hydrogen‐bonded supramolecular structure. The Co^II ion is in an octahedral coordination environment comprising two pyridyl N atoms, two carboxylate O atoms and two O atoms from water molecules. Intermolecular N—H...O and O—H...O hydrogen bonds produce R₂²(8), R₂²(12) and R₂²(14) rings, which lead to two‐dimensional chains. An extensive three‐dimensional supramolecular network of C—H...O, N—H...O and O—H...O hydrogen bonds and C—H...π interactions is responsible for crystal structure stabilization. This study is an example of the construction of a supramolecular assembly based on hydrogen bonds in mixed‐ligand metal complexes.     

2‐[6‐(1H‐Benzimidazol‐2‐yl)‐2‐pyridyl]‐1H‐benzimidazol‐3‐ium perchlorate monohydrate

The title compound, C₁₉H₁₄N₅⁺·ClO₄^?·H₂O, contains planar C₁₉H₁₄N₅⁺ cations, perchlorate anions and water mol­ecules. The two closest parallel cations (plane‐to‐plane distance of 3.41 Å), together with two neighbouring perchlorate anions and two water mol­ecules, form an electrically neutral quasi‐dimeric unit. Two acidic H atoms of the cation, both H atoms of the water mol­ecule, the N atoms of the imidazole rings and three of the four O atoms of the perchlorate anion are involved in the hydrogen‐bonding network within the dimeric unit. The remaining third acidic H atom of the imidazole rings and the water mol­ecules complete a two‐dimensional network of hydrogen bonds, thus forming puckered layers of dimers. The angle between the planes of two neighbouring dimeric units in the same layer is 33.25 (3)°.     

An unexpected chelate conformation in trans‐[(R)‐N,N′‐bis(α‐phenyl­salicyl­idene)­propane‐1,2‐diaminato(2–)]­bis(1‐methyl‐1H‐imidazole‐κN3)­cobalt(III) perchlorate

The title compound, [Co(C₂₉H₂₄N₂O₂)(C₄H₆N₂)₂]ClO₄, contains an optically active tetradentate Schiff base ligand in an equatorial plane and two 1‐methyl­imidazole ligands at apical positions. The central N—C—C—N chelate ring of the Schiff base ligand has an envelope structure with a λ conformation, which is different from the solution structure predicted from circular dichroism and ¹H NMR spectra.     

NiII and ZnII complexes of the hexadentate macrocyclic ligand cis‐6,13‐di­methyl‐1,4,8,11‐tetra­aza­cyclo­tetra­decane‐6,13‐di­amine

The title pendent‐arm macrocyclic hexa­amine ligand binds stereospecifically in a hexadentate manner, and we report here its isomorphous Ni^II and Zn^II complexes (both as perchlorate salts), namely (cis‐6,13‐di­methyl‐1,4,8,11‐tetra­aza­cyclo­tetra­decane‐6,13‐di­amine‐κ⁶N)­nickel(II) di­per­chlorate, [Ni(C₁₂H₃₀N₆)]­­(ClO₄)₂, and (cis‐6,13‐di­methyl‐1,4,8,11‐tetraaza‐cyclo­tetra­decane‐6,13‐di­amine‐κ⁶N)­zinc(II) di­per­chlorate, [Zn(C₁₂H₃₀N₆)]­(ClO₄)₂. Distortion of the N—M—N valence angles from their ideal octahedral values becomes more pronounced with increasing metal‐ion size and the present results are compared with other structures of this ligand.