Effects of chromophore orientation and molecule conformation on surface-enhanced Raman scattering studied with alkanoic acids and colloidal silver nanoparticles

Experimental studies have been carried out to gain a better understanding of the effects of chromophore orientation and molecular conformation on surface-enhanced Raman scattering (SERS) based on metal nanostructures. A series of alkanoic acids that contain a phenyl ring separated by methylene groups from the carboxylic acid, including phenylacetic acid, 3-phenylpropionic acid, 4-phenylbutyric acid, 5-phenylvaleric acid, and 6-phenylhexanoic acid, was investigated as model molecules with colloidal silver nanoparticles as SERS substrates. As the number of methylene groups increases, the molecules display an interesting zigzag intensity pattern of the phenyl ring bending mode around 1000 cm(-1) as well as a trend of appearance and disappearance of either the degenerate ring breathing mode or C[Double Bond]O vibrational mode near 1585 and 1630 cm(-1), respectively. Molecules containing an odd number of methylene units display a higher ring bending intensity and degenerate ring breathing mode and are suggested to have a trans conformation on the particle surface. Molecules with an even number of methylene units show a C[Double Bond]O vibrational mode and weaker ring bending in their SERS spectra and are suggested to have a gauche conformation on the silver nanoparticle surface. The different conformation is attributed to the varying interactions of the carboxylic group or the phenyl ring pi electrons with the silver surface. The SERS intensity was found to change little as the length between the phenyl ring and the carboxylic group was increased by adding CH(2) spacers. This is possibly because the effective distance between the phenyl ring and the silver surface does not change much with increasing number of CH(2) spacers as a result of changes in molecular conformation and variations in the phenyl ring orientation with CH(2) addition. The insight gained from this study is important for understanding SERS of complex molecules for which chromophore orientation and molecular conformation must be taken into careful consideration.     

Adsorption mechanisms of sulfathiazole on gold,silver and copper surfaces studied by SERS

Surface-enhanced Raman scattering (SERS) of sulfathiazole was studied in gold, silver and copper colloids as well as on a gold plate. SERS spectra of sulfathiazole in gold and silver colloids indicated chemisorption of molecules on the metal nanoparticles through the amide nitrogen, with the phenyl moiety orthogonally placed and the thiazole ring almost parallel positioned towards the metal surface. Although selectively enhanced phenyl bands pointed to a very similar position of the sulfathiazole molecules on the copper colloid, a chemical bonding was not implied. Unlike adsorption mechanisms and position of the molecules on the colloid metal surfaces, a sideway adsorption of sulfathiazole on the gold plate was proposed. Hereby, both, the amide nitrogen and the thiazole nitrogen were considered responsible for approaching of sulfathiazole to the gold enhancing surface.     

密度泛函理论研究银上吸附对巯基吡啶的SERS化学增强效应

基于密度泛函理论计算和拉曼光谱理论分析,我们研究了对巯基吡啶(4MPY)分子的拉曼光谱和其在银上的表面增强拉曼光谱(SERS),并进一步探讨了SERS与界面吸附结构、异构化、质子化和氢键作用以及低能激发态的关系。首先,我们对两种分子异构体的相对稳定性和拉曼光谱进行了理论分析。在此基础上,进而研究了该分子与不同银簇作用时的拉曼光谱,结果表明,4MPY以巯基硫与银簇作用形成强的Ag―S键,导致拉曼光谱的线型不依赖于所选银簇的大小。接着我们考虑了吡啶氮端作用的两种情况。(1)当4MPY-银簇复合物同时以吡啶氮与水簇或水合质子簇形成氢键时,结果表明吡啶环的部分振动频率随氢键和质子化发生蓝移。(2)当考虑吡啶氮与银簇作用时,吡啶环三角畸变振动发生蓝移。上述情况不仅解释了实验观测的振动频率变化,而且表明了化学环境改变对相对拉曼强度的影响。最后,我们计算了当对巯基吡啶分子以单端或双端与银簇作用,在考虑激发光与低能激发态的能量匹配时,拉曼光谱强度与低能激发态的关系。计算结果表明,在双端吸附构型下,与吡啶氮成键的银簇受激发产生电荷转移态,不仅导致吡啶环v_(12)、v_1和v_(8a)振动的拉曼信号增强,而且选择性地增强吡啶环C―H面内对称弯曲振动v9a的拉曼信号。     

Surface-enhanced Raman spectroscopic studies of coactivator-associated arginine methyltransferase 1

We report, for the first time, the surface-enhanced Raman spectra of an important enzyme, coactivator-associated arginine methyltransferase 1 (CARM1), involved in various biological activities such as tumor suppressor function and stem cell differentiation. We have employed surface-enhanced Raman scattering (SERS) to obtain insight into the structural details of CARM1 by adsorbing it to silver (Ag) nanoparticles. The enzyme retains its activity even after its adsorption onto Ag nanoparticles. We observe strong SERS modes arising from amide vibrations and aromatic ring amino acids. The SERS spectra revealed amide I bands at 1637 cm(-1) and 1666 cm(-1), which arise as a result of the alpha helix of the protein and the polypeptide backbone vibration of a random coil, respectively. In order to confirm the amide vibrations, we have performed SERS on deuterated CARM1, which exhibits a clear red shift in amide band positions. The SERS spectra may provide useful information, which could be harnessed to study the functional interactions of CARM1 with small molecule modulators.     

Surface-enhanced Raman scattering and the adsorption behavior of (RS)-phenylsuccinic acid

The surface geometry of (RS)-phenylsuccinic acid molecule was studied by analysis of the SERS spectra of aromatic dicarboxylic acid adsorbed on silver colloid surfaces. For a reliable analysis of the SERS spectrum, we also performed density functional theoretical calculations. The SERS spectral features indicated that the RSPSA molecules should bound to the silver as dicarboxylate, with a strongly tilted orientation with respect to the normal to the surface. Such a tilted orientation was presumed to occur by the simultaneous sigma and pi-type coordination of carboxylate groups to silver surface caused by the steric hindrance and electrostatic repulsion between the two carboxylate groups, and thereby RSPSA on silver was easily displaced with aromatic carboxylic acids. A sigma-type coordination therefore seemed to be more important than a pi-type coordination for aromatic carboxylic acid derivatives to assemble on a silver surface. The large enhancement of in-plane bending, out of plane bending and ring breathing modes in the surface-enhanced Raman scattering spectrum indicates that the molecule is adsorbed on the silver surface in a 'at least vertical' configuration, with the ring perpendicular to the silver surface.     

p-π共轭分子的氨基面外弯曲振动模的拉曼光谱

拉曼光谱是一种用途广泛的无损分子检测技术,其能够提供化学物质的分子结构指纹信息.一种面外弯曲振动模被称作wagging振动,它的信号尤为特殊,其频率和强度都非常依赖于检测环境.以乙烯胺和苯胺为例,采用密度泛函理论计算研究了p-π共轭分子分别与水簇和银簇作用的平衡结构、成键作用和拉曼光谱.结果表明,弱相互作用,如分子与金属表面的弱吸附作用以及分子与水之间的氢键作用,均使氨基面外弯曲振动模(ωNH2)的拉曼信号发生显著的变化.考虑溶剂化效应后,氢键作用减弱,计算拉曼光谱趋于一致.通过进一步对电子结构的分析,解释了面外弯曲振动信号显著增强的原因,揭示了面外弯曲振动模与分子p-π共轭作用之间的关系.     

Surface enhanced Raman scattering of 2,2' biquinoline adsorbed on colloidal silver particles

Surface enhanced Raman scattering (SERS) in silver sol and normal Raman spectra in the bulk and in solution of 2,2' biquinoline (BQ) molecule have been investigated. The observed Raman bands along with their corresponding FTIR bands have been assigned based on the established assignments of the vibrational bands of the parent napthalene and quinoline molecules. Existence of both the cis and trans form of the BQ molecule in solution and in the bulk are inferred from the normal Raman and FTIR spectra, whereas SERS study reveal that in the surface adsorbed state the molecule exists in the cis form. Definite evidence of the charge transfer interaction to the overall contribution in the SER enhancement have been reported. The excitation profile also supports the CT interaction. Estimated enhancement factor of the principal SERS bands indicate that the molecule is adsorbed on the silver surface through both the nitrogen atoms with the molecular plane almost perpendicular to the surface. This preferred orientation of the molecule is in conformity with its existence in the cis form in the surface adsorbed state.     

Spectral investigations on 1,5-dipiperidino anthraquinone

Optical absorption, fluorescence emission and surface enhanced Raman spectra of 1,5-dipiperidino anthraquinone (1,5-DPAQ) have been examined to elucidate the nature of molecule in different environments. Fluorescence emission and optical absorption measurements show that the polarity of the solvent plays a vital role through intermolecular hydrogen bonding and reorientational motion of solvent molecule around excited state fluorophore. Anisotropy measurement gives the angle between absorption and emission transition dipoles. The vibrational features observed in surface enhanced Raman spectroscopy (SERS) suggest that the molecules are chemisorbed. The adsorption of the molecule is through pi electrons in the anthraquinone ring and the axial lone pair of electrons of nitrogen. The orientation of the molecule is found to be 'flat-on'.     

Concentration-dependent surface-enhanced Raman scattering of 2-benzoylpyridine adsorbed on colloidal silver particles

Surface-enhanced Raman scattering (SERS) of 2-benzoylpyridine (2-BP) adsorbed on silver hydrosols has been investigated. It has been observed that with a small change in the adsorbate concentration, the SER spectra of 2-BP show significant change in their features, indicating different orientational changes of the different part of the flexible molecule on the colloidal silver surface with adsorbate concentration. The time dependence of the SER spectra of the molecule has been explained in terms of aggregation of colloidal silver particles and co-adsorption and replacement kinetics of the adsorbed solute and solvent molecules on the silver surface. The broad long-wavelength band in the absorption spectra of the silver sol due to solute-induced coagulation of colloidal silver particles is found to be red-shifted with the increase in adsorbate concentration. The surface-enhanced Raman excitation profiles indicate that the resonance of the Raman excitation radiation with the new aggregation band contributes more to the SERS intensity than that with the original sol band.     

Surface-Enhanced Raman Scattering of Rhodamine 123 in Silver Hydrosols and in Langmuir-Blodgett Films on Silver Islands

Surface-enhanced Raman scattering(SERS) of the Rhodamine 123 (Rh 123) molecule on ion-induced silver colloids has been studied. A time-dependent study of the SER spectra at a particular pH confirms charge transfer interaction between the probe molecule and the metal. The SER spectra of Rh 123 in Ag sol is compared with that of the molecules organized in a monolayer on silver island films by the Langmuir-Blodgett (LB) technique. The origin of high SERS activity of Rh 123 molecules in a monolayer on a silver island film is shown to be due to physisorption whereas in the ion-induced colloidal SERS both physisorption and chemisorption machanisms are involved. From these results, the contribution of charge transfer interaction to SERS in Ag sol has been estimated. In monolayer SERS, all the in-plane and out-of-plane (of xanthene ring) modes are more or less equally enhanced. This indicates that the xanthene plane of Rh 123 molecule organized in a LB film is oriented neither flat nor perpendicular to the silver island surface but is tilted. Copyright 2001 Academic Press.     

Analysis of vibrational spectra of L-alanylglycine based on density functional theory calculations

FT Raman and IR spectra of the crystallized biologically active molecule, L-alanylglycine (L-Ala-Gly) have been recorded and analyzed. The equilibrium geometry, bonding features and harmonic vibrational frequencies of L-Ala-Gly have been investigated with the help of B3LYP density functional theory (DFT) method. The calculated molecular geometry has been compared with the experimental data. The assignments of the vibrational spectra have been carried out with the help of normal coordinate analysis (NCA) following the scaled quantum mechanical force field methodology (SQMFF). The optimized geometry shows the non-planarity of the peptide group of the molecule. Potential energy surface (PES) scan studies has also been carried out by ab initio calculations with B3LYP/6-311+G** basis set. The red shifting of NH3+ stretching wavenumber indicates the formation of N-H...O hydrogen bonding. The change in electron density (ED) in the sigma* antibonding orbitals and E2 energies have been calculated by natural bond orbital analysis (NBO) using DFT method. The NBO analysis confirms the occurrence of strong intermolecular hydrogen bonding in the molecule.     

Self-assembled Monolayers of Two Aromatic Disulfides and a Diselenide on Polycrystalline Silver Films: An Investigation by SERS and XPS

Self-assembled monolayers of diphenyldisufide (DDS), naphthalenedisulfide (NDS), and diphenyldiselenide (DDSe) on polycrystalline silver films have been investigated by surface enhanced Raman spectroscopy (SERS) and X-ray photoelectron spectroscopy (XPS). DDS adsorbs on Ag through a homolytic cleavage of the S-S bond and resultant thiolate at the surface decomposes upon prolonged exposure to air. The geometry of the molecule is such that the benzene ring is almost horizontal to the surface. The Raman spectrum has been assigned in the light of ab-initio molecular orbital calculations. In DDSe, the Se-Se bond is retained upon adsorption and the molecule sticks up. In contrast, NDS is highly reactive on the microscopically rough surface so that a stable monolayer could not be prepared. A temperature dependent Raman study of the DDS monolayer shows the absence of any reorientation at the surface as one would expect from the adsorption geometry. XPS study complements the SERS data and shows the presence of Ag2S on an NDS exposed surface. Copyright 1999 Academic Press.     

Experimental and theoretical surface enhanced Raman scattering study of 2-amino-4-methylbenzothiazole adsorbed on colloidal silver particles

The adsorption of 2-amino-4-methylbenzothiazole (2-AMBT) on colloidal silver particles has been investigated by a surface enhanced Raman scattering (SERS) study. The SERS spectra of the 2-AMBT molecule at varied adsorbate concentrations recorded in different time domains are compared with its Fourier transform infrared (FTIR) spectrum and normal Raman spectrum (NRS) in the bulk and in solution. The experimentally observed SERS spectra are compared with the theoretically modeled surface complexes using ab initio restricted Hatree-Fock (RHF) and density functional theory (DFT) calculations. The most favorable adsorptive sites of the 2-AMBT molecule have been estimated by natural population analysis (NPA) using the above-mentioned high level of theories. The enhancement of the in-plane modes together with the appearance of Ag-N stretching frequency at 215 cm(-1) indicates that the 2-AMBT molecule is adsorbed on the silver surface through the lone pair electrons of both nitrogen atoms with the molecular plane nearly vertical to the surface.     

Structural properties of L-X-L-Met-L-Ala phosphonate tripeptides: a combined FT-IR, FT-RS, and SERS spectroscopy studies and DFT calculations

FT-IR and FT-RS spectra of three phosphonate tripeptides containing P-terminal L-Met-L-Ala [L-Gly-L-Met-L-Ala-PO3H2 (GMA), L-Leu-L-Met-L-Ala-PO3H2 ( LMA), and L-Phe-L-Met-L-Ala-PO3H2 (PMA)] were recorded and analyzed. Vibrational wavenumbers and intensities were calculated by density functional theory (DFT) at the B3LYP/6-311++G** level of theory and compared to these molecules in solid form. On the basis of this comparison, conclusions were drawn about the molecular structures. At the same time, the experimental data served as a test for the computational results. SERS spectra were recorded in a silver colloidal dispersion. Silver colloidal dispersions prepared by simple borohydride reduction of silver nitrate were used as substrates. A comparison is made between the SERS spectra and the spectra of the solid sample. Also, the capability of SERS for spectral fingerprinting of analytes with close structural properties using easily prepared substrates and relatively simple instrumentation is illustrated. By careful analysis, we obtained information on the orientation of these tripeptides and specific-competitive interactions of their functional groups with the silver surface. For example, all molecules are thought to adsorb on a silver surface via a P=O bond and a sulfur atom. In addition, the amide bond of GMA assists in the adsorption process, adopting a tilted orientation on the surface, with the N-H unit being closer to the surface than the C=O moiety. Conversely, the C=O unit of the LMA-CONH- bond lies closer to the silver surface than the N-H moiety. The -CH 3 group and P-O bond of LMA additionally interact with the silver surface, whereas for PMA the L-Phe lies almost flat on the colloidal silver surface.     

Vibrational spectroscopic studies of mesna and dimesna

Raman, and infrared spectra of mesna and dimesna have been collected in the present spectroscopic studies. Based on the group frequencies, relative intensities and Raman depolarization measurements, some vibrational assignments have been suggested. For both mesna and dimesna, at least two rotational conformers have been identified. Adsorption behavior was investigated from the recorded surface-enhanced Raman scattering (SERS) spectra. It was found that both mesna and dimesna adsorbed as thiolate on silver sol particles with the cleavage of the S-H bond in mesna and the S-S bond in dimesna. For the adsorbed thiolate, two conformers existed in the adsorption state.     

Vibrational characterization of L-leucine phosphonate analogues: FT-IR, FT-Raman, and SERS spectroscopy studies and DFT calculations

This study reports the Raman (FT-Raman) and absorption infrared (FT-IR) spectra, based on calculated wavenumbers and normal modes of vibrations, of the following compounds: L-Leu-D-NH-CH(Me)-PO(3)H(2) (LI), L-Leu-NH-C(Me)(2)-PO(3)H(2) (LII), L-Leu-D-NH-CH(Et)-PO(3)H(2) (LIII), L-Leu-L-NH-CH(Et)-PO(3)H(2) (LIV), L-Leu-L-NH-CH(EtOH)-PO(3)H(2) (LV), L-Leu-NH-C(Me)(Et)-PO(3)H(2) (LVI), L-Leu-L-NH-CH(PrA)-PO(3)H(2) (LVII), L-Leu-L-NH-CH(c-Pr)-PO(3)H(2) (LVIII), L-Leu-L-NH-CH(t-Bu)-PO(3)H(2) (LIX), L-Leu-L-NH-CH(BuA)-PO(3)H(2) (LX), L-Leu-L-NH-CH(c-Bu)-PO(3)H(2) (LXI), and L-Leu-L-NH-C(Adm)-PO(3)H(2) (LXII). The equilibrium geometries and vibrational wavenumbers were calculated using density functional theory (DFT) at the B3LYP, 6-311++G** level using Gaussian 03, Raint, GaussSum 0.8, and Gar2ped software. We briefly compare and analyze the experimental and calculated vibrational wavenumbers in the range 4000-400 cm(-1). In addition, the Raman wavenumbers are compared to those from the surface-enhanced Raman scattering (SERS) spectra for the phosphono analogues of l-leucine (l-Leu) adsorbed on a colloidal silver surface in an aqueous solution. The geometries of these molecules etched on the silver surface were deduced from observed changes in both the intensity and broadness of Raman bands in the spectra of the bound versus free species. For example, LVI appears to adsorb onto the colloidal silver particles mainly through the amine group and amide bond, which assists in the adsorption process, whereas LII shows strongly enhanced SERS bands due to the rocking, twisting, and stretching vibrations of the N(amid)C(sg)(Me)(2)P fragment, suggesting that this peptide's interaction with the silver surface occurs mainly via this fragment. On the other hand, the most dominant SERS bands of LIII and LIV due to the P═O bond stretches reflect P═O···Ag complex formation.     

Simulated SERS spectra of 4,4′-bipyridine/gold single molecule junction in different conductance states: ab initio molecular dynamics approach

The SERS spectra of 4,4′-bipyridine/gold single molecule junction in different conductance states at room temperature are calculated by performing ab initio molecular dynamics simulations, in connection with a Fourier transform of the polarizability autocorrelation function, to illustrate that the Raman peaks of the ON state are enhanced by an additional one or two orders of magnitude in comparison with the OFF state. Considering the relative intensities of SERS spectra, the largest enhanced peak for the OFF state is the ring breathing mode due to the simultaneous contribution from structural change, vibrational coupling, and charge transfer. For the ON state, the C–H bending mode has the largest enhancement due to structural change and charge transfer effects. Finally, the SERS spectra of 4,4′-bipyridine junction in the the ON state with perpendicular and tilted orientations are examined to understand the reason why the tilted junction has lower SERS spectrum intensity with doublet feature of the C–C stretching mode.     

Electronic absorption and vibrational spectra and nonlinear optical properties of L-valinium succinate

FT-Raman and FTIR techniques have been applied to investigate the potential nonlinear optical material l-valinium succinate. A detailed interpretation of the vibrational spectra was carried out with the aid of potential energy distribution analysis. Density functional theory is applied to explore the nonlinear optical properties of the molecule. Good consistency is found between the calculated results and the experimental data for IR and Raman spectra. The natural bond orbital analysis confirms the occurrence of strong intramolecular N-H?O hydrogen bonding.     

Inherent Conformational Preferences of Ac‐Gln‐Gln‐NHBn: Sidechain Hydrogen Bonding Supports a β‐Turn in the Gas Phase

Gas‐phase single‐conformation spectroscopy is used to study Ac‐Gln‐Gln‐NHBn in order to probe the interplay between sidechain hydrogen bonding and backbone conformational preferences. This small, amide‐rich peptide offers many possibilities for backbone–backbone, sidechain–backbone, and sidechain–sidechain interactions. The major conformer observed experimentally features a type‐I β‐turn with a canonical 10‐membered ring C=O—H?N hydrogen bond between backbone amide groups. In addition, the C=O group of each Gln sidechain participates in a seven‐membered ring hydrogen bond with the backbone NH of the same residue. Thus, sidechain hydrogen‐bonding potential is satisfied in a manner that is consistent with and stabilizes the β‐turn secondary structure. This turn‐forming propensity may be relevant to pathogenic amyloid formation by polyglutamine segments in human proteins.     

Surface-enhanced Raman scattering at the silver electrode/ionic liquid (BMIPF6) interface

This is the first report of in situ SER spectra of chemical species adsorbed on a Ag/room temperature ionic liquid (RTIL) interface. We have investigated the dependence of the SERS intensity of the RTIL derived from 1-n-butyl-3-methylimidazolium hexafluorophosfate (BMIPF6) adsorbed on a silver electrode. It has been shown that the BMI+ adsorbs on the silver electrode for potentials more negative than -0.4 V vs a Pt quasireference electrode (PQRE). In the -0.4 to -1.0 V potential range the SER spectra are similar to the Raman spectrum of the RTIL BMIPF6. At potentials more negative than -1.0 V some imidazolium ring vibrational modes and N-CH3 vibrations are enhanced, suggesting that the imidazolium ring is parallel to the surface and for potentials <-2.8 V the BMI+ is reduced to the BMI carbene. The potential dependence of the SERS intensities of Py adsorbed on a silver electrode in BMIPF6 has also been investigated. The results have shown that at potentials less negative than -0.8 V (vs PQRE) Py adsorbs at an end-on configuration forming an Ag-N bond. In the -0.9 to -1.4 V potential range Py molecules lie flat on the electrode surface and at potentials <-1.4 V Py is replaced by the BMI+. The electrochemical and SERS results have shown that Py has the effect of changing the oxidation of silver in that medium as well as the reduction of BMI+ to the BMI carbene. In the presence of Py the BMI+ reduction is observed at potentials near -2.4 V. The Ag electrode has presented SERS activity from 0.0 to -3.0 V.