脱氧核糖核酸分子在高分子溶液3个不同浓度区间的电泳迁移行为

 借鉴高分子亚浓溶液线团收缩理论 ,研究了脱氧核糖核酸 (DNA)片段在高分子溶液全浓度区间的电泳迁移行为。结果表明 ,在高分子稀溶液、亚浓溶液和浓溶液 3个不同浓度区间 ,DNA的电泳迁移行为各不同 ,DNA片段的分离在这 3个浓度区间也存在差异。     

Mannitol influence on the separation of DNA fragments by capillary electrophoresis in entangled polymer solutions

A new kind of sieving matrix is presented in this paper to allow satisfactory separation of DNA fragments in a relatively low viscous solution. When a certain amount of mannitol was added to cellulose solution not concentrated enough to separate PGEM-3Zf(+)/HaeIII standards well, a polymer solution with low viscosity but with very good separation effects was obtained. The separation result of this sieving buffer was comparable with those using highly concentrated cellulose solutions. The sieving ability of solutions with different cellulose concentrations and different amounts of mannitol has been investigated. It was proved that 0.5% was the minimum hydroxypropylmethylcellulose (HPMC) concentration that could be used to separate DNA fragments satisfactorily. HPMC solutions with a concentration of less than 0.5% could not separate the standard DNA fragments even in the presence of mannitol. It was found that 6% was the optimized mannitol concentration because either more or less mannitol will lead a decrease of resolution. The principle of the positive influence of mannitol has also been discussed.     

Capillary electrophoresis of RNA in dilute and semidilute polymer solutions

We report separations of RNA molecules (281-6583 nucleotides) by capillary electrophoresis in dilute and semidilute solutions of aqueous hydroxyethylcellulose (HEC) ether in varying buffers. RNA mobility and peak band widths are examined under both nondenaturing and also denaturing conditions. From studies of sieving polymer concentration and chain length, it is found that good separations can be obtained in semidilute solutions as well as in dilute solutions. The dependence of RNA mobility on its chain length is consistent with separation by a similar to transient entanglement mechanism in dilute solutions. In semidilute entangled solutions the separation proceeds by segmental motion.     

甘露醇添加剂对毛细管无胶筛分电泳分离DNA的影响

在纤维素衍生物筛分体系中加入甘露醇添加剂大大提高了分离能力,在较低筛分剂浓度条件下可得到满意的分离。同时还对甘露醇影响分离的机理做出了解释。     

毛细管电泳中葡萄糖-羟丙基甲基纤维素体系分离脱氧核糖核酸

葡萄糖作为羟丙基甲基纤维素（Hydroxpropylmethyl cellulose,HPMC)筛分体系的添加剂,可以改善该体系在低浓度时分离脱氧核糖核酸（DNA）的能力。研究了硼酸浓度和pH值对葡萄糖－羟丙基甲基纤维素体系分离性能的影响;并将葡萄糖与其它添加剂如甘油、甘露醇对分离的影响作了比较,葡萄糖特有的环状结构使得其对羟丙基甲基纤维素体系分离能力的提高更为显著。     

Distribution of single DNA molecule electrophoretic mobilities in semidilute and dilute hydroxyethylcellulose solutions

The distribution of center of mass electrophoretic mobility mobilities and normalized migration time of up to 1080 lambda DNA molecules per experiment were measured in both semidilute hydroxyethylcellulose HEC/0.5 x Tris-borate-EDTA (TBE) solutions and dilute HEC/0.5 x TBE solution by high-speed video microscopy. Measurements were made microscopically over a short migration distance in homogeneous DNA HEC/0.5 x TBE solution and after electrophoretic migration of a plug of DNA through 7 cm. Video at 120 frames/s (semidilute HEC solution) and 236 frames/s (dilute HEC solution) allowed visualization with adequate resolution for single molecule mobility measurements. The electrophoretic migration times and band shapes predicted from the measurements corresponded well with those measured by conventional capillary electrophoresis (CE) in both semidilute and dilute HEC. In semidilute solution, the band width predicted by a square root of time scaling is in good agreement with the results of conventional CE. However, in dilute solution the precision of the measurements was not good enough to allow scaled estimates of band widths.     

DNA separation by microchip electrophoresis using low-viscosity hydroxypropylmethylcellulose-50 solutions enhanced by polyhydroxy compounds

Low-viscosity polymer solutions have potential for double-stranded (ds) DNA separations in micrototal analysis systems (micro-TAS). In this paper, we report dilute, low-viscosity hydroxypropylmethylcellulose-50 (HPMC-50, 11.5 kDa) solutions containing polyhydroxy additives as separation media. Predominant operational variables, such as applied electric field strength, fluorescent intercalator (YOPro-1) concentration, polymer concentration, and additive concentration, are thoroughly investigated. Fast (within 170 s) and excellent separation of DNA restriction fragments ranging in size from 72 to 1353 base pairs (bp) is achieved in a 30 mm length channel of polymethylmethacrylate (PMMA) microchips at an electric field strength of 300 V/cm, by introducing 8% mannitol, 8% glucose or 10% glycerol additives into a 2% HPMC-50/1 x Tris-borate-EDTA (TBE) solution. The low-viscosity (40 cP) matrix formulation provides both coating of the microchannels and separation of DNA in one step. The performance in the solution surpasses that in highly concentrated HPMC-50 solution. In addition, separation using 1xTris-EDTA buffer in the 2% HPMC-50 matrix containing polyhydroxy additives also exhibits a notably increased performance. This is presumably due to formation of hydrogen-bonding interactions of polyhydroxy additives with HPMC-50 matrix and DNA so as to increase the coupling interactions between matrix and DNA molecules during electrophoresis. The result reflects that boric acid is not a prerequisite in polyhydroxy-enhanced HPMC-50 solution for separation.     

A design of nanosized PEGylated-latex mixed polymer solution for microchip electrophoresis

We report here advanced microchip electrophoresis using a nanoparticle doped polymer solution that enables greater separation of DNA. The proposed system is simple and effective without any new apparatus or complicated procedures. Various amounts and sizes (80 nm, 110 nm, and 193 nm) of polymer nanoparticle solutions (PEGylated-latex) were mixed with a conventional polymer solution for microchip electrophoresis. When a 0.49 wt% hydroxyl propyl methyl cellulose (HPMC) buffer solution was mixed with a 2.25 wt% 80 nm-PEGylated-latex a higher separation efficiency and a higher mobility of a wider molecular range of dsDNA (10 bp to 2 kbp) was achieved under low viscosity conditions (<5.5 cP) than in conventional 0.7% HPMC. The separation performance was dependent on the particle size and concentration. Furthermore, the effectiveness of the larger PEGylated-latex (193 nm) was not as high as the smaller one (80 to 110 nm). The observed separation improvement by polymer solution with latex-nanoparticles seems to derive from the balance between wider polymer mesh size and the structural obstacles of particles in the buffer.     

Comparison of RNA, single-stranded DNA and double-stranded DNA behavior during capillary electrophoresis in semidilute polymer solutions

We present a study of the separation of RNA, single-stranded DNA (ssDNA) and double-stranded DNA (dsDNA) in semidilute linear hydroxyethylcellulose (HEC) solution. Our results strive to provide a better understanding of the mechanisms of nucleic acid migration during electrophoresis in polymer solutions under native and denaturing conditions. From a study of the dependence of mobility on chain length and applied electric field, we found that RNA and ssDNA show better separation and higher resolution over a larger range of sizes compared to dsDNA. In addition, RNA reptation without orientation extends to longer chain lengths in comparison to ssDNA, possibly as a result of different type of short-lived secondary structure formations. Such a comparative study between nucleic acid capillary electrophoresis helps to optimize RNA separation and provides better understanding of RNA migration mechanisms in semidilute polymer solutions under denaturing conditions.     

Phase separation kinetics in unentangled polymer solutions under high‐rate extension

Phase separation processes following high‐rate extension in unentangled polymer solutions are studied theoretically. The flow‐induced demixing is associated with the coil–stretch transition predicted in high‐molecular‐weight polymer solutions at high‐enough Weissenberg numbers. The developed mean‐field theory is valid in the dilute/semidilute solution regime, where the stretched coils overlap strongly. We elucidate and discuss the main kinetic stages of the polymer/solvent separation process including (i) growth of concentration fluctuations and formation of oriented protofibrils by anisotropic spinodal decomposition; (ii) development of well‐defined highly oriented and stiff fibrils forming an anisotropic network (cross‐linked fiber); (iii) microphase separation and lateral collapse of the network yielding dense oriented fiber. These novel predictions are in qualitative agreement with the experimental data. © 2017 Wiley Periodicals, Inc. J. Polym. Sci., Part B: Polym. Phys. 2017 , 55, 623–637     

缠结聚合物溶液毛细管电泳

从缠结聚合物溶液理论及其电泳迁移理论对缠结聚合物溶液毛细管电泳的现状给予综述，并就缠结聚合物溶液毛细和电泳在ＤＮＡ，蛋白质等大分子分离方面的应用进行了概述。     

Analysis of double-stranded DNA by capillary electrophoresis using poly(ethylene oxide) in the presence of hexadecyltrimethylammonium bromide

The impact of hexadecyltrimethylammonium bromide (CTAB) on the separation of ds-DNA by capillary electrophoresis in conjunction with laser-induced fluorescence (CE-LIF) detection using poly(ethylene oxide) (PEO) solution is described. The use of CTAB for improved separation reproducibility and efficiency of DNA has not been demonstrated although it is widely used for controlling the magnitude and direction of electroosmotic flow in CE. With increasing CTAB concentration, the interactions of DNA with ethidium bromide (EtBr) and with the capillary wall decrease. For the separation of DNA fragments with the sizes ranging from several base pairs (bp) to 2,176 bp, a polymer solution consisting of 0.75% poly(ethylene oxide), 100 mM TB buffer (pH 8.0), 25 microg/mL EtBr, and 0.36 microg/mL CTAB is proper. Using the PEO solution, we separated a mixture of DNA markers V (pBR 322/HaeIII digest) and VI (pBR 328/BglI digest and pBR 328/HinfI digest) within 8 min at -375 V/cm, with the limit of detection of 2.0 ng/mL based on the peak height for the 18-bp DNA fragment. The method is highly efficient (>10(6)plate/m), repeatable (RSD of the migration times <1.5%), and sensitive. In addition, it is convenient to fill a capillary (75 microm in diameter) with such a low-viscosity PEO solution by syringe pushing.     

Linear viscoelasticity of poly(acrylonitrile-co-itaconic acid)/1-butyl-3-methylimidazolium chloride extended from dilute to concentrated solutions

The solution rheology of poly(acrylonitrile-co-itaconic acid) (poly(AN-co-IA)) in 1-butyl-3-methylimidazolium chloride ([BMIM]Cl) spanning dilute, semidilute unentangled and entangled regimes were investigated. The exponents in the specific viscosity η_sp ～ overlap parameter c[η] power law were 1, 2 and 4.7 for dilute, semidilute unentangled and entangled regimes, respectively, which were found to be consistent with the scaling prediction for neutral linear polymers in θ-solvent. For dilute solutions (lower than 0.9 wt.%), the linear viscoelastic responses were observed to be in good agreement with the Zimm model (Flory exponent ν = 0.5). While for semidilute unentangled solutions (between 0.9 and 8 wt.%), results obtained had been found to be consistent with Rouse model. Considering Flory exponent ν = 0.5 and the concentration dependences of the specific viscosity and relaxation time, it had been evaluated that poly(AN-co-IA) in [BMIM]Cl behaves as a neutral polymer in θ-solvent. It had also been suggested that according to the unusual deviation of Cox-Merz rule, poly(AN-co-IA)/[BMIM]Cl solutions are typical neutral polymeric liquids for the concentrated solutions but have shown a more complicated behavior at high deformation rates.     

Phase separation of polymer solutions on a solvent surface

Study of the dynamics of liquid droplets of dilute and semidilute polymer solutions on the surfaces of liquid subphases representing solvents for corresponding polymers has shown that a spot of a rather stable layer is formed on an air–liquid interface. The spot spreads over a liquid subphase surface to yield a monomolecular polymer layer. At the same time, the solvent passes into the solution, so that the polymer or its concentrated solution remains on the subphase surface. The polymer does not dissolve in the bulk subphase for several hours. The stability of the polymer spot has been explained under the assumption that the interfacial surface possesses elastic properties and hinders the penetration of macromolecules into the bulk subphase. Desolvation of macromolecules followed by phase separation occurs on the surface. The initial rate of the phase separation of the solution is rather high, while the time dependence of the diameter of the spreading spot is described by a scaling law with an exponent almost equal to 2/3.     

Reduced viscosity polymer matrices for microchip electrophoresis of double-stranded DNA

On a polymethylmethacrylate (PMMA) microchip, double-stranded DNA fragments with a wide size range from 50 bp to 20 kbp were separated by two polymer solutions. One was a hydroxypropylmethylcellulose-4000 (HPMC-4000) solution of 1.3% (w/v) to separate fragments below 590 bp, and another was a mixed four molecular weight poly(ethylene oxide) solution at a total concentration of 0.1% to separate fragments above 520 bp. The widths at half height (wh) of the fragments had a good relationship with their migration times (tR) in both polymer solutions. Such a relationship was suitable for obtaining the wh values of unresolved peaks, calculating the resolution of two adjacent fragments, and optimizing microchip separation matrices. Based on the relativity, a low viscosity medium containing 2% HPMC-50 and 8% glucose was optimized for high-performance separation of a phiX174 HaeIII restriction fragment digest.     

毛细管电泳无胶筛分介质分离DNA的机理

快速、高效而灵敏的分离技术对于DNA的分析是至关重要的。使用无胶筛分介质的毛细管电泳是最重要的DNA分离技术之一,通常使用无交联的高分子溶液作为无胶筛分介质。本文在介绍高分子溶液理论的基础上,综述了DNA在毛细管电泳无胶筛分介质(缠结溶液和稀溶液)中的分离机理,主要包括Ogston筛分模型、各种修正的爬行模型、瞬态缠结偶合机理及其改进机理等。     

Accumulation of Macromolecules in Pores from Dilute Solutions in Poor Solvent

The phenomenon of spontaneous accumulation of macromolecules in pores from the dilute solutions of flexible polymers in poor solvent is studied using the density functional theory. It is shown that the partitioning of macromolecules between the bulk solution and slitlike pore, on whose walls the segments are predominantly adsorbed, depends on the ability of a semidilute polymer solution to wet the wall of a pore and on its size, as well as on the degree of undersaturation of bulk solution and temperature. Partitioning coefficient increases in a jumpwise manner when the surface first-order phase transition or capillary separation take place. It is revealed that the regularities of capillary separation of polymer solutions in a poor solvent are similar to those observed during the capillary condensation of unsaturated vapor. The applicability of the Kelvin equation to describe the conditions of capillary separation of flexible polymer solutions is analyzed.     

Comparison of the separation of large DNA fragments in the presence and absence of electroosmotic flow at high pH

This paper describes the analysis of large DNA fragments at pH > 10.0 by capillary electrophoresis (CE) in the presence of electroosmotic flow (EOF) using hydroxyethylcellulose (HEC) solution. HEC solution in the anodic reservoir enters the capillaries filled with high-pH buffer by EOF after sample injection. With respect to resolution, sensitivity, and speed, separation conducted under discontinuous conditions (different pH values of HEC solutions and buffer filling the capillary) is appropriate. Using HEC solution at concentrations higher than its entanglement threshold ensures a good separation of large DNA fragments in the presence of EOF at high pH. In addition to pH and HEC, the electrolyte species, dimethylamine, methylamine, and piperidine, play different roles in determining the resolution. The separation of DNA fragments ranging in size from 5 to 40 kilo base pairs was completed in 6 min using 1.5% HEC prepared in 20 mM methylamine-borate, pH 12.0, and the capillary filled with 40 mM dimethylamine-borate, pH 10.0. In comparison, this method allows faster separations of large DNA fragments compared with that conducted in the absence of EOF using dilute HEC solutions.