Search for the global minimum structures of AlB3H2n (n = 0 − 6) clusters

The global minimum structures of AlB₃H_2n (n = 0–6) clusters are determined using the stochastic search method at the B3LYP/6–31G level of theory. These initially specified geometries are recalculated using B3LYP and CCSD(T) methods using the 6–311++G^** basis set. The structural and electronic properties of the two lowest‐lying isomers are presented. The structural parameters obtained for aluminum borohydride are compared with the experimental and theoretical results. The H₂ fragmentation energies of the most stable isomers are investigated. Chemical bonding analyses for the global minimum of AlB₃H_2n (n = 0–6) clusters are performed using the adaptive natural density partitioning method. © 2014 Wiley Periodicals, Inc.     

Density functional calculations on CO attached to PtnRu(10−n) (n = 6–10) clusters

B3LYP and SCF‐Xα calculations have been performed on Pt_nRu_(10−n)CO (n = 6–10) clusters. The work aims to simulate the adsorption of CO on the (111) surface of platinum metal and to examine the electronic effects that arise when some Pt atoms are replaced with Ru. Adsorption energies and Pt C and C O stretching frequencies have been calculated for each cluster. Ru does affect the electronic structure of the clusters, the calculated adsorption energies, and frequencies, the Pt C frequency more than the C O. The donation‐backbonding mechanism that accompanies the shift in CO stretching frequency that occurs when CO adsorbs on platinum does not explain the differences in frequency shift observed in CO on various Pt/Ru surfaces. © 2000 John Wiley & Sons, Inc. Int J Quant Chem 77: 589–598, 2000     

过渡金属表面α-吡啶基的振动光谱学判据

基于簇模型采用密度泛函理论在B3LYP/6-311+G^**/LANL2DZ(metal)基组水平上计算了吡啶及α-吡啶基吸附于Pt、Pd、Rh、Ni四种金属表面的红外和拉曼光谱. 通过详细地分析和比较计算结果与文献报道的实验谱图, 提出了以N端吸附的吡啶分子和α-吡啶基这两种表面物种各自存在的谱学判据. 计算结果表明在以上四种金属表面, α-吡啶基的拉曼活性比吡啶的小, 而特征谱峰的红外强度与吡啶相当. 该结果表明红外光谱是检测金属表面α-吡啶基的有效手段, 也解释了采用表面增强拉曼光谱和红外光谱研究吡啶吸附在金属表面得出不同结构的原因.     

Influence of NO2 attachment on the nuclear magnetic shielding tensors of N and B nuclei in C30B15N15 heterofullerene: a DFT study

Adsorption of nitrogen dioxide in three different configurations on the exterior surface of C₃₀B₁₅N₁₅ is studied using density functional theory calculations. To this end, we optimized the structures of raw C₃₀B₁₅N₁₅ and nine NO₂–C₃₀B₁₅N₁₅ complexes at the B3LYP/6-31G^* level of theory and then calculated chemical shielding (CS) tensors at the GIAO-B3LYP/6-311G^** level for the optimized structures. The calculated chemical shielding isotropy (CSI), chemical shielding anisotropy (CSA), and orientation of CS tensors (Euler angles) reveal that the adsorption configurations (nitro, trans-nitrite, and cis-nitrite) have different effects on the electronic structure of C₃₀B₁₅N₁₅. Natural atomic charges based on natural population analysis (NPA) were used to justify the changes in CSI values after gas sorption.     

Preparation,Structural Characterization and the Molecular Structure of 2,3,5-Trinitro-<Emphasis Type="Italic">p</Emphasis>-xylene

2,3,5-trinitro-p-xylene (TPX) is synthesized by nitration of p-xylene in mixed acid of nitric and sulfuric acid. Single crystal of TPX is cultured from DMF solution using a slow cooling method. The compound is characterized by FT-IR, ¹H NMR and MS techniques. The crystal structure is determined by X-ray⁴ single-crystal diffraction analysis. The crystal belongs to the monoclinic system with space group P_n. Its unit cell parameters are as follows: a = 0.8271(2), b = 0.6011(1), c = 1.0487(2) nm, β = 105.42(2)^∘, V = 0.50263(2) nm³, D_c = 1.593 g/cm³, Z = 2, F(0 0 0) = 248. The molecular structures of TPX have been calculated at the B3LYP/6-31G^** and B3LYP/6-311G^** levels of theory, and its frequencies analysis have also been accomplished at the same level of theory. The thermal decomposition process of the compound was studied using DSC and TG-DTG techniques. The predicted nitro group vibrations with B3LYP/6-311G^** calculation considerably agree with the observed frequencies. The calculated results propose that the structural parameters from the theory are close to those of the crystal structure from the experiments.     

A study of methanetetraol dehydration to carbonic acid

Two alternative dehydration reactions C(OH)₄ → (HO)₂CO + H₂O and C(OH)₄ + H₂O → (HO)₂CO + 2H₂O are studied by ab initio Becke3LYP/6–311 + G^** and MP2/6–31G^** methods. Calculated energy and geometry characteristics of intermediates and transition states predict a catalytic effect of one water molecule and the exothermism of the transformations. Relevant HF/6–311 + G^**, HF/6–31G^**, HF/6–31G, and HF/3–21G calculations were performed for comparison. © 1997 John Wiley & Sons, Inc.     

Experimental and Theoretical Studies on (<Emphasis Type="Italic">p</Emphasis>-methoxyphenyl)thiosemicarbazide

The title compound, (p-methoxyphenyl)thiosemicarbazide, has been characterized by elemental analysis, IR, electronic spectroscopy, and single-crystal X-ray diffraction. Ab initio calculations of the structure, atomic charges, natural bond orbital, topological analysis, and thermodynamic functions of the title compound were performed at HF/6-311G^** and B3LYP/6-311G^** levels of theory. The calculated results show that the sulfur atom and nitrogen atoms have bigger negative charges, which result in that they are the potential sites to react with the metallic ions. Electronic absorption spectra were calculated by the time-dependent density functional theory (TD-DFT) and configuration interaction single-excitation (CIS) methods and they are corresponding to the experimental values. The calculation of the second-order optical nonlinearity was carried out, and the molecular hyperpolarizability was 2.592×10⁻³⁰ esu, indicating it is a potential candidate as second-order nonlinear optical material.     

Indole‐3‐acetic acid and N‐acetyltryptophan corrosion inhibition effects on mild steel in 1 M hydrochloric acid solution

Corrosion inhibition of indole‐3‐acetic acid and N‐acetyl tryptophan on carbon steel was investigated using polarization and electrochemical impedance spectroscopy (EIS). Polarization results revealed that corrosion inhibitors could reduce the rate of cathodic and anodic reactions on metal surface. EIS analysis showed inhibition efficiency of indoles increases by increasing the inhibitor concentration. The maximum inhibition efficiency was 97% and 80% in solutions containing 10 mM indole‐3‐acetic acid and 10 mM N‐acetyl tryptophan, respectively. The adsorption of inhibitors was found to follow Langmuir isotherm. Adsorption and film formation of inhibitors on the metal substrate were confirmed by calculating thermodynamic adsorption parameter (ΔG⁰_ads) and characterization of exposed metals' surface through contact angle measurements. Copyright © 2014 John Wiley & Sons, Ltd.     

Evaluation of exchange‐correlation functionals in comparison to B3LYP for the description of silicon and Cu‐doped silicon clusters

Several developed exchange‐correlation functionals in density functional theory have been systematically applied to describe the geometries and electronic properties of small silicon (Si_n+1, n < 5) and doped silicon (CuSi_n) clusters. The performance of the various approaches is done with their critical comparison with B3LYP and available high level wave function methods. Our calculations indicate that all functional give reasonable results. Further, OLYP/6‐311+G* approach generally agrees with B3LYP results. The good performance of OLYP is of significant interest knowing that the hybrid functionals are computationally more demanding than nonhybrid schemes. So, we recommend OLYP/6‐311+G* approach for studying the doped silicon clusters and understanding the electronic properties of silicon by the presence of doped metal impurities. © 2007 Wiley Periodicals, Inc. Int J Quantum Chem, 2008     

Ab Initio Calculations of the Conformational Preferences of 1,3-Oxathiane S-Oxide and its Analogs Containing S and SE Atoms—Evidence for Stereoelectronic Interactions Associated with the Anomeric Effects

Abstract

Stereoelectronic interactions associated with the AE and also the conformational and structural properties of 1,3-oxathiane S-oxide (1), 1,3-dithiane S-oxide (2), 1,3-thiaselenane S-oxide (3), 1,3-oxaselenane Se-oxide (4), 1,3-thiaselenane Se-oxide (5), and 1,3-diselenane Se-oxide (6) were investigated using quantum mechanical methods. These compounds were fully optimized at the B3LYP/6 – 311 + G** and HF/6 – 311 + G** levels of theory. The Gibbs Free Energy, Enthalpy, and Entropy differences (i.e., ΔG, ΔH, and ΔS) between the axial and equatorial conformations were calculated at the B3LYP/6 – 311 + G** and HF/6 – 311 + G** levels of theory. The decrease of the AE is corresponding to the decreases of calculated Δ(G _ax – G _eq) value of the above mentioned compounds. The calculated AE values are more significant for the justification of the conformational dominances of the compounds than steric effects. In this work, the relations between the Anomeric Effects, donor and acceptor orbital energies, occupancies, structural parameters, dipole–dipole interactions, and conformational behavior of the compounds have been studied.     

A comparative spectroscopic,electronic structure and chemical shift investigations of o-Chloronitrobenzene,p-Chloronitrobenzene and m-Chloronitrobenzene

The structural characteristics and substituent effects of o-Chloronitrobenzene, m-Chloronitrobenzene and p-Chloronitrobenzene have been analysed by experimental FTIR, FT-Raman and FT-NMR spectroscopic studies. A detailed quantum chemical calculations have been performed using DFT/B3LYP method with 6-311++G^**, 6-31G^** and cc-pVTZ basis sets. Complete vibrational analyses of the compounds were performed. The temperature dependence of thermodynamic properties has been analysed. The atomic charges and charge delocalisation of the molecule have been performed by natural bond orbital (NBO) analysis. Molecular electrostatic surface potential (MESP), total electron density distribution and frontier molecular orbitals (FMOs) are constructed at B3LYP/6-311++G^** level to understand the electronic properties. The charge density distribution and site of chemical reactivity of the molecules has been obtained by mapping electron density isosurface with electrostatic potential surfaces (ESPs). The electronic properties, HOMO and LUMO energies were measured by time-dependent TD-DFT approach. ¹H and ¹³C NMR spectra were recorded and ¹H and ¹³C nuclear magnetic resonance chemical shifts of the molecule were calculated. The ¹H and ¹³C nuclear magnetic resonance (NMR) chemical shifts of the molecules in chloroform solvent were calculated by using the Gauge-Independent Atomic Orbital (GIAO) method and are found to be in good agreement with experimental values.     

HO2自由基与NO2反应通道的理论研究

应用密度泛函理论DFT/B3LYP对HO₂＋NO₂反应进行了研究, 在B3LYP/6-311G^**和CCSD(T)/6-311G^**水平上计算了HO₂自由基与NO₂分子反应的单重态和三重态反应势能面, 计算结果表明, 单重态反应势能面中的直接氢抽提反应机理是此反应的主要反应通道, 即HO₂自由基的氢原子转移到NO₂分子的氮原子上形成产物P₁ (HNO₂＋³O₂), 另一个可能的反应通道是单重态反应势能面上HO₂中的端位氧原子进攻NO₂分子中的氮原子形成中间体1 (HOONO₂), 接着中间体1 (HOONO₂)经过氢转移形成产物P₂ (trans-HONO＋³O₂), 以上两个反应通道都是放热反应通道, 分别放热90.14和132.52 kJ•mol^－1.     

Boron rings containing planar octa-and enneacoordinate cobalt,iron and nickel metal elements

For a series of boron rings with planar hyper-coordinate 8th group transition metal atoms, singlet 1FeB8-2, multiplet kFeB9n (n = -1, k = 1; n = 0, k = 2), singlet 1CoB8n(n = -1, 1, 3), multiplet kCoB9n (n = 1, k = 2; n = 0, k = 1) and singlet 1NiB9 , the geometry structures have been optimized to be local minima on corresponding potential hyper-surfaces. The electron structures are discussed by orbital analysis and the aromaticity is predicted by nucleus-independent chemical shifts calculation at both the B3LYP/6-311 G* and BP86/6-311 G* levels of theory, respectively. The results suggest that all these structures with high symmetry planar geometries are stable and have aromatic properties with six π valence electrons.     

Proton affinities of polybenzenoid aromatic hydrocarbons and those with five-membered rings

Proton affinities of PAHs including one five-membered ring are calculated by using the AM1 Hamiltonian for the determination of ΔH_f^o of the neutral and protonated molecules. The calculated PAs are compared to experimental PAs measured by chemical ionization mass spectrometry, using a new method based on competition between charge transfer and proton transfer occurring during the ionization process. A procedure is proposed to validate AM1-calculated PAs from experimental PAs after rescaling the calculated and measured PA values. The site of protonation is first determined on the criterion of the lowest loss of aromaticity, then on the criterion of the largest HOMO coefficient. For indene, the corrected result is compared to an ab initio calculation at the MP2/6-31G^*//HF/6-31G^* level and to a DFT calculation at the B3LYP/6-31G^* and the B3LYP/6-311 + G^** levels. Five new PAs are thus established and one published experimental PA is revised. © 1997 by John Wiley & Sons, Inc.     

Highly efficient implementation of pseudospectral time‐dependent density‐functional theory for the calculation of excitation energies of large molecules

We have developed and implemented pseudospectral time‐dependent density‐functional theory (TDDFT) in the quantum mechanics package Jaguar to calculate restricted singlet and restricted triplet, as well as unrestricted excitation energies with either full linear response (FLR) or the Tamm–Dancoff approximation (TDA) with the pseudospectral length scales, pseudospectral atomic corrections, and pseudospectral multigrid strategy included in the implementations to improve the chemical accuracy and to speed the pseudospectral calculations. The calculations based on pseudospectral time‐dependent density‐functional theory with full linear response (PS‐FLR‐TDDFT) and within the Tamm–Dancoff approximation (PS‐TDA‐TDDFT) for G2 set molecules using B3LYP/6‐31G*^* show mean and maximum absolute deviations of 0.0015 eV and 0.0081 eV, 0.0007 eV and 0.0064 eV, 0.0004 eV and 0.0022 eV for restricted singlet excitation energies, restricted triplet excitation energies, and unrestricted excitation energies, respectively; compared with the results calculated from the conventional spectral method. The application of PS‐FLR‐TDDFT to OLED molecules and organic dyes, as well as the comparisons for results calculated from PS‐FLR‐TDDFT and best estimations demonstrate that the accuracy of both PS‐FLR‐TDDFT and PS‐TDA‐TDDFT. Calculations for a set of medium‐sized molecules, including C_n fullerenes and nanotubes, using the B3LYP functional and 6‐31G^** basis set show PS‐TDA‐TDDFT provides 19‐ to 34‐fold speedups for C_n fullerenes with 450–1470 basis functions, 11‐ to 32‐fold speedups for nanotubes with 660–3180 basis functions, and 9‐ to 16‐fold speedups for organic molecules with 540–1340 basis functions compared to fully analytic calculations without sacrificing chemical accuracy. The calculations on a set of larger molecules, including the antibiotic drug Ramoplanin, the 46‐residue crambin protein, fullerenes up to C₅₄₀ and nanotubes up to 14×(6,6), using the B3LYP functional and 6‐31G^** basis set with up to 8100 basis functions show that PS‐FLR‐TDDFT CPU time scales as N^2.05 with the number of basis functions. © 2016 Wiley Periodicals, Inc.     

SERS and DFT study of nitroarenes adsorbed on metal nanoparticles

A combined SERS and DFT investigation has been performed for 2-amino,5-nitropyridine (ANP) adsorbed on silver colloidal nanoparticles in order to get a better insight into the adsorption mechanism of ANP on the silver surface. Both B3LYP and B3PW91 functionals were used in the DFT calculations on ANP in the anionic form (ANP⁻) and on different models of ANP⁻/silver surface complexes. A mixed basis set 6-311++G^**/LANL2DZ was used in the case of the ANP⁻/Ag⁺ complexes. From the comparison between the experimental and the computational data, it was evinced that ANP is adsorbed on the silver surface in the anionic form with a quinonoid electronic structure through the nitrogen atom of the imino group.     

Pathways of the reaction of nucleophilic addition of ammonia to formaldehyde in the gas phase and in the complex with formic acid:ab initio calculations

The gradient pathways of the reaction of nucleophilic addition of ammonia to formaldehyde were calculated for free molecules and in the NH₃...H₂CO...HC(O)OH complex by theab initio RHF/6-31G^**, MP2(fc)/6-31G^**, and MP2(full)/6-311++G^** methods. Both reactions proceed concertedly. In the first case, the reaction successively passes through two transitional states with an energy barrier exceeding 35 kcal mol⁻¹. In the case of the complex with formic acid, the reaction follows a conventional pathway, although its activation barrier calculated by the RHF/6-31G^** and MP2(fc)/6-31G^** methods decreases to 12.6 and 3.8 kcal mol⁻¹, respectively. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 1, pp. 13–20, January, 1998.     

The C−NO2 bond dissociation energies of some nitroaromatic compounds: DFT study

The C−NO₂ bond dissociation energies in nitrobenzene; 3-amino-nitrobenze; 4-amino-nitrobenze; 1,3-dinitrobenzene; 1,4-dinitrobenzene; 2-methyl-nitrobenzene; 4-methyl-nitrobenzene; and 1,3,5-trinitrobenzene nitroaromatic molecules, are computed using B3LYP, B3PW91, B3P86 three-parameter hybrid Density Functional Theory (DFT) methods in conjunction with 6-31G^** basis set. By comparing the computed energies and experimental ones, it is found that B3P86/6-31G^** is not capable of predicting the satisfactory bond dissociation energy (BDE). The BDEs computed with both B3LYP/6-31G^** and B3PW91/6-31G^** for the nitroaromatic molecules are closer to the experimental ones than those obtained with B3P86/6-31G^**. But, when compared with the experimental one, the BDE from the B3LYP/6-31G^** has the maximum deviation, which is completely outside our desired target accuracy for chemical predictions (less than 2.00 kcal mol⁻¹). Therefore, we suggest B3PW91/6-31G^** method as a reliable method of computing the BDE for removal of the nitrogen dioxide group in the nitroaromatic compounds. In addition, the C−NO₂ BDEs for 2,4,6-trinitrotoluene (TNT), triaminotrinitrobenzene (TATB), diaminotrinitrobenzene (DATB), and picramide are studied with B3PW91/6-31G^** method.     

Physicochemical Properties and Surface Tension Prediction of Mixed Surfactant Systems: Triton X‐100 with Dodecylpyridinium Bromide and Triton X‐100 with Sodium Dodecylsulfonate

Dependences of the surface tension of aqueous solutions of ionic (dodecylpyridinium bromide, sodium dodecylsulfonate) and nonionic (Triton X‐100) surfactants and their mixtures on total surfactant concentration and solution composition were studied, and the surface tension of the mixed systems were predicted using different Miller's model. It was found that how to select the model for calculation of ω is corresponding to the degree of the deviation from the ideality during the adsorption of mixed surfactants. The compositions of micelles and adsorption layers at air‐solution interface as well as parameters (β^m, β^ads) of headgroup‐headgroup interaction between the molecules of ionic and nonionic surfactants were calculated based on Rubingh model. The parameters (B₁) of chain‐chain interaction between the molecules of ionic and nonionic surfactants were calculated based on Maeda model. The free energy of micellization calculated from the phase separation model (ΔG ₂ ^m ), and by Maeda's method (ΔG ₁ ^m ) agree reasonably well at high content of nonionic surfactant. The excess free energy ΔG _ads ^E and ΔG _m ^E (except α=0.4) for TX‐100/SDSn system are more negative than that TX‐100/DDPB system. These can be probably explained with the EO groups of TX‐100 surfactant carrying partial positive charge.     

Density functional theory investigation of the binding interactions between phosphoryl,carbonyl, imino,and thiocarbonyl ligands and the pentaaqua nickel(II) complex: Coordination affinity and associated parameters

Density Functional Theory (UB3LYP/6‐311++G(d,p)) calculations of the affinity of the pentaaqua nickel(II) complex for a set of phosphoryl [O?P(H)(CH₃)(PhR)], imino [HN?C(CH₃)(PhR)], thiocarbonyl [S?C(CH₃)(PhR)] and carbonyl [O?C(CH₃)(PhR)] ligands were performed, where R?NH₂, OCH₃, OH, CH₃, H, Cl, CN, and NO₂ is a substituent at the para‐position of a phenyl ring.The affinity of the pentaaqua nickel(II) complex for these ligands was analized and quantified in terms of interaction enthalpy (ΔH), Gibbs free energy (ΔG²⁹⁸), geometric and electronic parameters of the resultant octahedral complexes. The ΔH and ΔG²⁹⁸ results show that the ligand coordination strength increases in the following order: carbonyl < thiocarbonyl < imino < phosphoryl. This coordination strength order is also observed in the analysis of the metal‐ligand distances and charges on the ligand atom that interacts with the Ni(II) cation. The electronic character of the substituent R is the main parameter that affects the strength of the metal‐ligand coordination. Ligands containing electron‐donating groups (NH₂, OCH₃, OH) have more exothermic ΔH and ΔG²⁹⁸ than ligands with electron‐withdrawing groups (Cl, CN, NO₂). The metal‐ligand interaction decomposed by means of the energy decomposition analysis (EDA) method shows that the electronic character of the ligand modulates all the components of the metal‐ligand interaction. The absolute softness of the free ligands is correlated with the covalent contribution to the instantaneous interaction energy calculated using the EDA method. © 2013 Wiley Periodicals, Inc.