Comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry for the identification of organobrominated compounds in bluefin tuna

This study evaluates comprehensive two-dimensional gas chromatography (GC×GC) coupled to time-of-flight mass spectrometry (GC×GC-ToF MS) for the simultaneous analysis of several classes of organobromines (OBs), including polybrominated diphenyl ethers (PBDEs), polybrominated biphenyls (PBBs), methoxylated PBDEs (MeO-PBDEs), several halogenated naturally produced compounds (HNPs) and eight novel brominated flame retardants (NBFRs), polybrominated hexahydroxanthene derivates (PBHDs), 2,4,6-tribromoanisole and a mixed halogenated compound (MHC-1), in bluefin tuna muscles. The proposed methodology maximised separation of both within and among OB families, and among these and other halogenated micropollutants detected in these samples and co-extracted matrix components. Special attention has been paid to solve co-elution problems observed during the analysis of OBs with one-dimensional GC-based techniques. Satisfactory separation among several relevant PBDEs and MeO-PBDEs has been obtained allowing their unambiguous determination in a single run. Additional studies were conducted to identify selected NBFRs and HNPs. 2,4-Dibromoanisole, a dibromophenol isomer and hexabromobenzene were identified in the investigated samples. Several new tri- and tetra-BHD derivates were also identified, indicating that these compounds could apparently exist as structured families in nature. In addition, a tetrabrominated diMeO-biphenyl and two tetrabrominated diMeO-BDEs were also tentatively identified.     

Characterization of lipids in complex samples using comprehensive two-dimensional gas chromatography with time-of-flight mass spectrometry

Most lipids are a complex mixture of classes of compounds such as fatty acids, fatty alcohols, diols, sterols and hydroxy acids. In this study, the suitability of comprehensive two-dimensional gas chromatography coupled to a time-of-light mass spectrometer is studied for lipid characterization in complex samples. With lanolin, a refined wool wax, as test sample, it is demonstrated that combined methylation plus silylation is the preferred derivatization procedure to achieve (i) high-quality GC x GC separation and (ii) easily recognizable ordered structures in lipid analysis. Optimization of the GC x GC column combination, the influence of the temperature programme on the quality of the separation, and the potential and limitations of automated TOF-MS-based identification are discussed. The combined power of a 2D separation, ordered structures and MS detection is illustrated by the identification of several minor sample constituents.     

Identification of volatiles from pineapple (Ananas comosus L.) pulp by comprehensive two-dimensional gas chromatography and gas chromatography/mass spectrometry

Combining qualitative data from the chromatographic structure of 2-D gas chromatography with flame ionization detection (GC×GC-FID) and that from gas chromatography-mass spectrometry (GC/MS) should result in a more accurate assignment of the peak identities than the simple analysis by GC/MS, where coelution of analytes is unavoidable in highly complex samples (rendering spectra unsuitable for qualitative purposes) or for compounds in very low concentrations. Using data from GC×GC-FID combined with GC/MS can reveal coelutions that were not detected by mass spectra deconvolution software. In addition, some compounds can be identified according to the structure of the GC×GC-FID chromatogram. In this article, the volatile fractions of fresh and dehydrated pineapple pulp were evaluated. The extraction of the volatiles was performed by dynamic headspace extraction coupled to solid-phase microextraction (DHS-SPME), a technique appropriate for slurries or solid matrices. Extracted analytes were then analyzed by GC×GC-FID and GC/MS. The results obtained using both techniques were combined to improve compound identifications.     

Identification of certain chemical agents in complex organic solutions by gas chromatography/tandem mass spectrometry

Analytical methods that are used for the detection and identification of chemicals related to the Chemical Weapons Convention in complex organic solutions were developed. A matrix modified by the addition of complex diesel oil background compounds and interferences was used for the development of a gas chromatography-mass spectrometry or gas chromatography-tandem mass spectrometry (GC-MS or GC-MS/MS) method for unambiguous identification of the scheduled chemicals. Co-elution of diethyl N,N-dimethylphosphoramidate and ethyl N,N-dimethylphosphoramidocyanidate, which are not separated by GC, was identified by GC-MS. Although GC-MS can identify the compounds, GC-MS/MS identification has greater accuracy and sensitivity in the case of complex matrixes. Four scheduled chemicals were accurately and selectively identified against numerous interfering substances by GC-MS/MS. The fragmentation chemistry of these compounds using MS/MS analysis was investigated.     

全二维气相色谱/飞行时间质谱法定性筛查鱼肉组织中含卤有机污染物

采用全二维气相色谱/飞行时间质谱(GC×GC-TOFMS),建立了鱼肉样品中含卤有机污染物的定性和定量分析方法.鱼肉样品用正己烷丙酮(1∶1,V/V)提取,凝胶色谱和复合硅胶柱净化,浓缩富集,全二维气相色谱联用飞行时间质谱(DB-5MS毛细管色谱柱联HT-8色谱柱)检测.软件自动识别后,经三步筛查,共鉴定出含氯或溴化合物72种,其中包括33种多氯联苯,9种有机氯农药,4种多溴联苯醚,4种DDT代谢产物,2种氯代茴香醚,2种氯苯乙烯,1种氯代茴香硫醚及1种甲基三氯生.另外,从质谱信息上看,有16种化合物明显含氯或含溴,但是因为缺少必要的谱库信息不能准确识别.采用外标定量法,对鱼肉样品中检出的主要的10种多氯联苯和1种多溴联苯醚进行了准确定量分析.     

Fast and sensitive determination of pesticide residues in vegetables using low-pressure gas chromatography with a triple quadrupole mass spectrometer

In this study, the feasibility of low-pressure gas chromatography (LP-GC) in conjunction with a triple quadrupole mass spectrometer, as a route towards fast pesticide residue analysis, was investigated. A Varian GC-MS system equipped with a mass spectrometer model 1200 was used. LP-GC-MS experiments were performed on a HP-5 10 m x 0.32 mm x 0.25 microm analytical column connected to a 2.5 m x 0.15 mm non-coated restriction precolumn at the inlet end. For comparison purposes conventional GC-MS analysis was performed on a RTX-5 30 m x 0.25 mm x 0.5 microm column. Under the optimized conditions the analysis time was reduced to 13.3 min with the LP-GC approach which corresponds to an almost threefold gain in speed versus the conventional GC (37 min). Despite the poorer separation power of the LP-GC column, the experiments conducted with tomato and onion extracts spiked with 78 pesticides proved that LP-GC-MS is of practical value to perform full scan screening analysis. Moreover, the rate of false negative results was higher in the case of conventional GC-MS while the LP-GC-MS enabled correct identification of pesticides at lower levels since the peaks were improved in both size and shape. Validation experiments were performed on a sample of 12 representative pesticides for comparison of performance characteristics of the LP-GC and GC approaches with mass spectrometer operated in scan, SIM and MS/MS mode. The LP-GC column set-up interfaced to the MS detector was found to be superior to the conventional GC with respect to obtained linearity, accuracy and precision parameters. Also, lower limits of detection in real extracts were achieved using the LP-GC approach. Finally, the LP-GC-MS/MS analysis of tomato samples with incurred pesticide residues demonstrated the applicability of the developed method for analysis of real samples.     

大气有机物热脱附-全二维气相色谱-火焰离子化分析方法

全二维气相色谱（GC×GC）是20世纪90年代发展起来的具有高分辨率、高灵敏度、高峰容量等优势的分离技术,在我国将其用于大气挥发性有机物（VOCs）研究方面才刚刚起步.本文将GC-GC与氢火焰离子化检测器（FID）联用,构建了用于测量大气有机物的热脱附-全二维气相色谱-氢火焰离子化分析系统（TD-GC×GC-FID）.采用HP-5MS和HP-INNOWAX色谱柱,建立了C5-C15大气有机物分析方法,实现了一次分析过程同时分离非甲烷烃（NMHCs）、含氧挥发性有机物（OVOCs）和卤代烃等多种组分.利用标准物质和四级杆质谱（qMS）进行定性,外标法结合FID质量校正因子定量.目标物在GC-GC谱图中第一和第二维保留时间变化分别小于0.6s和0.02s,峰体积平均相对标准偏差为14.3%,其中烷烃和芳香烃为4.5%.标准曲线r2均值大于0.99,平均检出限为6.04ng,平均回收率为111%.利用该方法检测到2010年1月北京市区大气中400多种有机物（信噪比大于50）,鉴定了其中的103种物质,包括烷烃、烯烃、芳香烃、卤代烃、醛、酮、酯、醇和醚等.所测定有机物平均总浓度为51.3×10-9V/V,其中OVOCs约占51%,芳香烃约占30%,烷烃约占15%,卤代烃和烯烃分别占3%和1%.平均浓度最高的前3个组分是乙醇（9.84×10-9V/V）、丙酮（6.72×10-9V/V）和甲苯（3.48×10-9V/V）.     

Determination of Teucrium chamaedrys volatiles by using direct thermal desorption-comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry

The direct qualification and quantification of the volatile components of Teucrium chamaedrys was studied using a direct thermal desorption (DTD) technique with comprehensive two-dimensional (2D) gas chromatography-time-of-flight mass spectrometry (GC x GC-TOF/MS). The GC x GC separation chromatographically resolved hundreds of components within this sample, and with the separation coupled with TOF/MS for detection, high probability identifications were made for 68 compounds. The quantitative results were determined through the use of internal standards and the desorption of differing amounts of raw material in the injector. The highest yield of volatile compounds (0.39%, w/w) was obtained at 150 degrees C thermal desorption temperature using 1.0mg of dried sample placed in a glass injector liner when studied over the range 1.0-7.0mg. Lowest yield of 0.33% (w/w) was found for the largest sample size of 7.0mg. Relative standard deviation (RSD) for 10 replicates at each size sample were in the range 3.9-21.6%. The major compounds identified were beta-pinene, germacrene D, alpha-pinene, alpha-farnesene, alpha-gurjunene, gamma-elemene and gamma-cadinene. All identified compounds were quantified using total ion chromatogram (TIC) peak areas. DTD is a promising method for quantitative analysis of complex mixtures, and in particular for quantitative analysis of plant samples, which can yield data without the traditional obligation for costly and time-consuming extraction techniques.     

Comparison of comprehensive two-dimensional gas chromatography/time-of-flight mass spectrometry and gas chromatography-mass spectrometry for the analysis of tobacco essential oils

A sample of tobacco essential oil was analyzed using gas chromatography-mass spectrometry (GC/MS) and comprehensive two-dimensional gas chromatography coupled to a time-of-flight mass spectrometry (GC × GC/TOFMS), respectively. In the GC/MS analysis, serially coupled columns were used. By comparing the GC/MS results with GC × GC/TOFMS results, many more components in the essential oil could be found within the two-dimensional separation space of GC × GC. The quantitative determination of components in the essential oil was performed by GC × GC with flame ionization detection (FID), using a method of multiple internal standards calibration.     

Recent progress in the analysis of sugar monomers from complex matrices using chromatography in conjunction with mass spectrometry or stand-alone tandem mass spectrometry

Analysis of trace levels of carbohydrate monomers in complex matrices requires excellent discrimination of the peaks of interest from background noise. Minimizing contaminating peaks introduced during sample preparation and chromatography is extremely important. However, the exquisite selectivity of the mass spectrometer is essential as a chromatographic detector in this regard. Traditionally gas chromatography-mass spectrometry (GC-MS) has been the method of choice for trace analysis of derivatized carbohydrates. Recent improvements in commercial tandem mass spectrometers (MS-MS) are encouraging the use of GC-MS-MS for improved specificity in trace analysis. There has also been an explosion in applications of electrospray ionization (ESI) for sensitive introduction of polar molecules (including sugars) into the mass spectrometer. This has encouraged ongoing developments in high-performance liquid chromatography-mass spectrometry (LC-MS) and MS-MS of underivatized carbohydrates. This has the potential to dramatically simplify sample preparation. However, as yet LC-MS and MS-MS do not match the sensitivity of GC-MS or GC-MS-MS. Developments in analysis of sugar monomers from complex matrices using chromatography (GC/LC) in conjunction with mass spectrometry (MS, MS-MS) or stand-alone MS-MS are discussed.     

Application of gas chromatography high-resolution mass spectrometry to the determination of trace monobromopolychlorodibenzo-p-dioxins in environmental samples

A capillary column gas chromatographic/high resolution mass spectrometric method was developed for the determination of monobromopolychlorodibenzo-p-dioxins (BPCDDs) in environmental samples. The mass spectrometer was operated at high resolution (> 10,000) in the selected ion monitoring mode with magnet switching among tetra through octa groups to achieve low or subpicogram detection limits. Standard BPCDDs (tetracongener through octacongener groups) were utilized to measure accurately the mass spectrometric relative response factors for these compounds, and linear calibrations were achieved by using these standard compounds at different concentrations. The method detection limit is low or sub-parts-per-trillion levels for BPCDDs, the accuracy better than 80% and the precision better than ± 10%. Quantification of BPCDDs and preliminary identification of some specific BPCDD isomers in fly ash samples are also reported.     

Pulsed flow modulation two-dimensional comprehensive gas chromatography-tandem mass spectrometry with supersonic molecular beams

Pulsed flow modulation (PFM) two-dimensional comprehensive gas chromatography (GC x GC) was combined with quadrupole-based mass spectrometry (MS) via a supersonic molecular beam (SMB) interface using a triple-quadrupole system as the base platform, which enabled tandem mass spectrometry (MS-MS). PFM is a simple GC x GC modulator that does not consume cryogenic gases while providing tunable second GC x GC column injection time for enabling the use of quadrupole-based mass spectrometry regardless its limited scanning speed. The 20-ml/min second column flow rate involved with PFM is handled, splitless, by the SMB interface without affecting the sensitivity. The combinations of PFM GC x GC-MS with SMB and PFM GC x GC-MS-MS with SMB were explored with the analysis of diazinon and permethrin in coriander. PFM GC x GC-MS with SMB is characterized by enhanced molecular ion and tailing-free fast ion source response time. It enables universal pesticide analysis with full scan and data analysis with reconstructed single ion monitoring on the enhanced molecular ion and another prominent high mass fragment ion. The elimination of the third fragment ion used in standard three ions method results in significantly reduced matrix interference. GC x GC-MS with SMB improves the GC separation, and thereby our ability for sample identification using libraries. GC-MS-MS with SMB provides better reduction (elimination) of matrix interference than GC x GC-MS. However, it is a target method, which is not always applicable. GC x GC-MS-MS does not seem to further reduce matrix interferences over GC-MS-MS and unlike GC x GC-MS, it is incompatible with library identification, but it is beneficial to have both GC x GC and MS-MS capabilities in the same system.     

Integrated system for on-line gas and liquid chromatography with a single mass spectrometric detector for the automated analysis of environmental samples

An integrated system has been developed which combines liquid (LC) and gas (GC) chromatographic separation with a single mass spectrometer (MS). On-line solid-phase extraction (SPE) of 10–200 ml aqueous samples on a short (10 × 2.0 mm I.D.) precolumn packed with a styrene-divinylbenzene copolymer is used for analyte enrichment. The trace-enrichment procedure was automated by means of a PROSPEKT cartridge-exchange/solvent-selection/valve-switching unit. After sample loading, the precolumn is eluted on-line in two subsequent runs, first onto the GC-MS system and, next, onto the LC-MS system using a particle beam (PB) interface. Prior to entering the PB-MS, the LC eluent passes through the flow cell of a UV diode-array detector (DAD). Both GC-MS and LC-PB-MS generate classical electron ionisation (EI) and chemical ionisation (CI) spectra which are useful for the identification of low- and sub-μg/l concentrations of environmental pollutants covering a wide polarity and volatility range. The LC-DAD data provide additional means for quantitation and yield complementary spectral information. All three detection systems (GC-MS, LC-DAD, LC-PB-MS) and the trace-enrichment procedure are fully automated and controlled from the keyboard of the central computer. With such a ‘MULTIANALYSIS’ system GC-MS, LC-DAD and LC-MS data of the same sample can be obtained within 3 h. The system was optimised with nine chlorinated pesticides in drinking water as test mixture. With 100-ml samples detection limits in GC-MS were 0.0005−0.03 μg/l, and in LC-PB-MS 0.5–7 μg/l, both in the full-scan (EI) mode. Negative chemical ionisation (NCI) with methane as reagent gas improved the sensitivity of six halogenated compounds 3- to 30-fold and provided relevant information for structural elucidation of unknown compounds in real-world samples. LC-DAD detection limits varied from 0.01 to 0.05 μg/l. Relative standard deviations (R.S.D.) of retention times were less than 0.2% in all systems, R.S.D.s of peak areas were 5–15% for GC-MS and LC-PB-MS and less than 5% for LC-DAD. The ‘MULTIANALYSIS’ system was used to analyse surface water samples and river sediment extracts; several pollutants were detected and identified.     

Application of a pentafluorobenzyl bromide derivatization method in gas chromatography/mass spectrometry of trace levels of halogenated phenols in air, water and sediment samples.

An analytical method using pentafluorobenzyl bromide (PFBB) derivatization and gas chromatography/mass spectrometry (GC/MS) has been applied to identify and quantify chloro-, bromo- and dichlorophenols in air, water and sediment samples. Phenols in air sample were collected with a PS-2 Sep-PAK cartridge, and eluted with 2-propanol. For water and sediment samples, liquid-liquid extraction with dichloromethane was carried out, and the solvent was exchanged to 2-propanol. The phenols in the solution reacted with PFBB to form the corresponding pentafluorobenzyl esters. After extracting the derivatives into hexane, the determination was carried out by GC/MS with selected-ion monitoring. The detection limits of phenols in air, water and sediment were 0.0033 - 0.0073 microg/m3, 0.0066 - 0.0147 microg/L and 0.33 - 0.73 microg/kg, respectively. More than 90% recoveries of the halogenated phenols were obtained from real environmental samples spiked by the halogenated phenols. The three isomers of mono-chlorophenols were detected in sediment samples in the range of 5.2 - 9.2 microg/kg in wet weight basis.     

气相色谱-四极杆高分辨飞行时间质谱分析复杂芳烃体系中的苯甲醛、苯甲醇、苯乙酮与苯乙醛

建立了气相色谱-四极杆高分辨飞行时间串联质谱分析复杂芳烃体系样品中苯甲醛、苯甲醇、苯乙酮与苯乙醛的方法。该方法通过使用高分辨质谱得到目标化合物特征离子的精确质量数,结合色谱保留时间,有效排除了复杂芳烃体系样品本底中碎片离子的干扰,提高了定性与定量分析的准确性。使用目标化合物特征离子的质谱峰面积作为定量计算依据。苯甲醛、苯甲醇、苯乙酮与苯乙醛在各自的质量浓度范围内呈现良好的线性响应,回收率为87.97%~103.01%,定量限分别为0.04、0.10、0.08与0.03 mg/L,检出限分别为0.01、0.03、0.02与0.01 mg/L。对3份实际样品中的苯甲醛、苯甲醇、苯乙酮与苯乙醛进行了定量分析。本研究为气相色谱-四极杆高分辨飞行时间质谱技术应用于复杂体系中的微量杂质分析提供了一种新的思路和手段。通过精确的质量分辨和测定可以降低对色谱分离的依赖,弥补传统气相色谱-四极杆低分辨质谱技术的不足。     

Elucidation of urinary metabolites of fluoxymesterone by liquid chromatography-tandem mass spectrometry and gas chromatography-mass spectrometry

The suitability of liquid chromatography tandem mass spectrometry (LC-MS/MS) and gas chromatography mass spectrometry (GC-MS) for the elucidation of fluoxymesterone metabolism has been evaluated. Electrospray ionization (ESI) and collision induced dissociation (CID) fragmentation in LC-MS/MS and electron impact spectra (EI) in GC-MS have been studied for fluoxymesterone and two commercially available metabolites. MS(n) experiments and accurate mass measurements performed by an ion-trap analyser and a QTOF instrument respectively have been used for the elucidation of the fragmentation pathway. The neutral loss scan of 20 Da (loss of HF) in LC-MS/MS has been applied for the selective detection of fluoxymesterone metabolites. In a positive fluoxymesterone doping control sample, 9 different analytes have been detected including the parent compound. Seven of these metabolites were also confirmed by GC-MS including 5 previously unreported metabolites. On the basis of the ionization, the CID fragmentation, the accurate mass of the product ions and the EI spectra of these analytes, a tentative elucidation as well as a proposal for the metabolic pathway of fluoxymesterone has been suggested. The presence of these compounds has also been confirmed by the analysis of five other positive fluoxymesterone urine samples.     

Determination of two oxy-pyrimidine metabolites of diazinon in urine by gas chromatography/mass selective detection and liquid chromatography/electrospray ionization/mass spectrometry/mass spectrometry

An analytical method was developed for the determination in urine of 2 metabolites of diazinon: 6-methyl-2-(1-methylethyl)-4(1H)-pyrimidinone (G-27550) and 2-(1-hydroxy-1-methylethyl)-6-methyl-4(1H)-pyrimidinone (GS-31144). Two of the urine sample preparation procedures presented rely on gas chromatography/mass selective detection (GC/MSD) in the selected ion monitoring mode for determination of G-27550. For fast sample preparation and a limit of quantitation (LOQ) of 1.0 ppb, urine samples were purified by using ENV+ solid-phase extraction (SPE) columns. For analyte confirmation at an LOQ of 0.50 ppb, classical liquid/liquid partitioning was used before further purification in a silica SPE column. An SPE sample preparation procedure and liquid chromatography/electrospray ionization/mass spectrometry/mass spectrometry (LC/ESI/MS/MS) were used for both G-27550 and GS-31144. The limit of detection was 0.01 ng for G-27550 with GC/MSD, and 0.016 ng when LC/ESI/MS/MS was used for both G-27550 and GS-31144. The LOQ was 0.50 ppb for G-27550 when GC/MSD and the partitioning/SPE sample preparation procedure were used, and 1.0 ppb for the SPE only sample preparation procedure. The LOQ was 1.0 ppb for both analytes when LC/ESI/MS/MS was used.     

Gas chromatography/tandem mass spectrometry analysis of alkylresorcinols in red blood cells

Erythrocyte alkylresorcinols (5‐alkyl‐1,3‐dihydroxybenzenes) are potential biomarkers of wholegrain wheat and rye intake. However, their high‐throughput quantitative analysis by gas chromatography/mass spectrometry (GC/MS) is hindered by the time‐consuming sample preparation and, more importantly, by interfering compounds that still remain after sample cleanup. In the present work we describe a gas chromatography/tandem mass spectrometry (GC/MS/MS) method for the rapid and reliable quantification of alkylresorcinols in erythrocyte samples. The performance of the GC/MS/MS method is compared with that of GC/MS. The main characteristics of the method are: lower limits of detection: 2–10 µg/L standard solution; lower limits of quantification: 6–30 µg/L standard solution; linearity coefficients: 0.9611–0.9888; linear ranges: 2–20 µg/L in erythrocytes; and intra‐day precisions (n = 6): 4–13% at endogenous analyte levels in non‐spiked erythrocytes. Tandem mass spectrometry showed greatly improved selectivity over single‐stage mass spectrometry in the case of erythrocyte samples, eliminating all interferences detectable in single‐stage MS and enabling simple peak integration for quantification. Moreover, increased selectivity resulted in GC separation speeded up by a factor of two, allowing the duplicate analysis of over 40 samples per day. This GC/MS/MS method is suggested as an improved alternative to GC/MS for the quantification of alkylresorcinols in erythrocytes for assessing wholegrain wheat and rye intake. Copyright © 2008 John Wiley & Sons, Ltd.     

Poly(amic acid) and polyimide characterization using gas chromatography/mass spectrometry and particle beam liquid chromatography/mass spectrometry

A number of polymers were hydrolyzed in NH₄OH and studied using gas chromatography/ mass spectrometry (GC/MS) and particle beam liquid chromatography/mass spectrometry (particle beam LC/MS) techniques. The polymers studied in this report were as follows: BPDA-PDA, BPDA-PDA-ODA, BPDA-PDA-GFDA, PMDA-ODA, and BTDA-APB. Some of the polymer samples were hydrolyzed in both their acid and imide forms to see if any mass spectrometric differences could be detected. ln all cases, the acid and imide spectra looked the same. GC/MS was unable to determine either the amine or acid portion of these polymers via a direct injection of the sample, but when the samples were first extracted with diethyl ether and this ether extract was injected into the chromatograph, the amine portion of the polymers was readily detected. The acid portion was, again, not detected in either the sample or the ether extract. The particle beam was able to detect both the amine and acid monomeric units in the nonextracted sample.     

Comprehensive two-dimensional gas chromatography, retention indices and time-of-flight mass spectra of flavonoids and chalcones

The applicability of comprehensive two-dimensional gas chromatography (GC×GC) for flavonoids analysis was investigated by separation and identification of flavonoids in standards, and a complex matrix natural sample. The modulation temperature was optimized to achieve the best separation and signal enhancement. The separation pattern of trimethylsilyl (TMS) derivatives of flavonoids was compared on two complementary column sets. Whilst the BPX5/BPX50 (NP/P) column set offers better overall separation, BPX50/BPX5 (P/NP) provides better peak shape and sensitivity. Comparison of the identification power of GC×GC-TOFMS against both the NIST05 MS library and a laboratory (created in-house) TOFMS library was carried out on a flavonoid mixture. The basic retention index information on high-performance capillary columns with a non-polar stationary phase was established and database of mass spectra of trimethylsilyl derivatives of flavonoids was compiled. TOFMS coupled to GC×GC enabled satisfactory identification of flavonoids in complex matrix samples at their LOD over a range of 0.5-10 μg/mL. Detection of all compounds was based on full-scan mass spectra and for each compound a characteristic ion was chosen for further quantification. This study shows that GC×GC-TOFMS yields high specificity for flavonoids derived from real natural samples, dark chocolate, propolis, and chrysanthemum.