Secondary ion formation of low molecular weight organic dyes in time-of-flight static secondary ion mass spectrometry

Time-of-flight static secondary ion mass spectrometry (TOF-S-SIMS) was used to characterize thin layers of oxy- and thiocarbocyanine dyes on Ag and Si. Apart from adduct ions a variety of structural fragment ions were detected for which a fragmentation pattern is proposed. Peak assignments were confirmed by comparing spectra of dyes with very similar structures. All secondary ions were assigned with a mass accuracy better than 50 ppm. The intensity of molecular ions as well as fragment ions has been studied as a function of the type of organic dye, the substrate, the layer thickness and the type of primary ion. A large yield difference of two orders of magnitude was observed between the precursor ions of cationic carbocyanine dyes and the protonated molecules of the anionic dyes. Fragment ions, on the other hand, yielded similar intensities for both types of dye. As the dye layers deposited on an Ag substrate yielded higher secondary ion intensities than those deposited on a Si substrate, the Ag metal clearly acts as a promoting agent for secondary ion formation. The effect was more pronounced for precursor signals than for fragment ions. The promoting effect decreased as the deposited layer thickness of the organic dye layer was increased.     

Molecular aggregation of rhodamine dyes in dispersions of layered silicates: influence of dye molecular structure and silicate properties

The molecular aggregation of six rhodamine dyes (rhodamine 560, B, 3B, 19, 6G, 123) in layered silicate (saponite and fluorohectorite) dispersions was investigated by using visible (vis) spectroscopy. The dye molecular aggregation was influenced by the properties of both the silicates and the dyes themselves. The layer charge of the silicates enhanced the molecular aggregation of the hydrophilic, cationic dyes. The presence of a carboxyl acid group in the dye molecules inhibited adsorption of the dyes on the surface of fluorohectorite, a silicate with a high charge density. A lower or no adsorption could be observed by vis spectroscopy. Strong association of the dyes to the silicate surface led to remarkable changes in the dye spectra, mainly due to the molecular aggregation. Dye assemblies initially formed after mixing the dye solutions with silicate dispersions were unstable. Decomposition of the dye molecular assemblies, and the formation of new species or molecular aggregate rearrangements, were studied on the bases of time-difference spectra. The reaction pathways were specific, not only for the dyes, depending upon their molecular structure and properties, but also on the silicate substrates.     

Effect of polymer binding on the spectroscopic properties of stilbene-based fluorescent dyes

Studies utilizing absorption and emission spectrophotometry have been carried out to observe the effect of various polymer substrates on the spectral characteristics of several stilbene-based fluorescent dyes. Poly(vinyl alcohol), cellulose acetate, cellulose fiber, and bovine serum albumin were used as substrates for two common fluorescent whitening agents and for two model compounds. Binding of these molecules to polymers leads to a marked red shift in the absorption spectra and an increase in vibrational structure. These effects are attributed to an increase in molecular planarity induced by the polymer environment. For the case of bovine serum albumin, it is concluded that the dye molecules bind to the protein largely through electrostatic interaction involving the dye sulfonate groups. The spectral characteristics of the dye molecules on wool fibers are interpreted in light of these results.     

Adsorption of sulfonated dyes by polyaniline emeraldine salt and its kinetics

A method for the removal of anionic (sulfonated) dyes from aqueous dye solutions using the chemical interaction of dye molecules with polyaniline is reported. Polyaniline (PANI) emeraldine salt was synthesized by chemical oxidation. Sulfonated dyes undergo chemical interactions with the charged backbone of PANI, leading to significant adsorption of the dyes. This phenomenon of selective adsorption of the dyes by PANI is reported for the first time and promises a green method for removal of sulfonated organics from wastewater. The experimental observations from UV-vis spectroscopy, X-ray diffraction, and conductivity measurements rule out the possibility of secondary doping of polyaniline salt by sulfonated dye molecules. A possible mechanism for the chemical interaction between the polymer and the sulfonated dye molecules is proposed. The kinetic parameters for the adsorption of sulfonated dyes on PANI are also reported.     

Release and molecular transport of cationic and anionic fluorescent molecules in mesoporous silica spheres

We describe here a method for study of bulk release and local molecular transport within mesoporous silica spheres. We have analyzed the loading and release of charged fluorescent dyes from monodisperse mesoporous silica (MMS) spheres with an average pore size of 2.7 nm. Two different fluorescent dyes, one cationic and one anionic, have been loaded into the negatively charged porous material and both the bulk release and the local molecular transport within the MMS spheres have been quantified by confocal laser scanning microscopy. Analysis of the time-dependent release and the concentration profiles of the anionic dye within the spheres show that the spheres are homogeneous and that the release of this nonadsorbing dye follows a simple diffusion-driven process. The concentration of the cationic dye varies radially within the MMS spheres after loading; there is a significantly higher concentration of the dye close to the surface of the spheres (forming a "skin") compared to that at the core. The release of the cationic dye is controlled by diffusion after an initial period of rapid release. The transport of the cationic dye within the MMS spheres of the dye from the core to near the surface is significantly faster compared to the transport within the surface "skin". A significant fraction of the cationic dye remains permanently attached to the negatively charged walls of the MMS spheres, preferentially near the surface of the spheres. Relating bulk release to the local molecular transport within the porous materials provides an important step toward the design of new concepts in controlled drug delivery and chromatography.     

Adsorption of xanthene food additive dyes to cellulose granules

It was found that three kinds of the synthetic food additive dyes, red nr. 3 (erythrosine), nr. 104 (phloxine), and nr. 105 (rose bengal) were adsorbed to the surface of charred cellulose granules and the maximum amounts of adsorption of these dyes were 3.75, 3.42, and 4.74 mg/g cellulose, respectively. Scanning electron microscopy-electron probe micro analysis (SEM-EPMA) showed a coating of the dyes on the surface of charred cellulose granules. Electron spectroscopy for chemical analysis (ESCA) suggested the presence of NH₃ ⁺ in the surface of charred cellulose granules. Since all three dye compounds have both anionic carboxylate and hydrophobic groups and were released from the surface of charred cellulose granules by 0.1 N NaOH solution, it was surmised that these three food additive dyes were bound to the surface of cellulose granules by both ionic and physical interactions.     

The optical properties of molecules and chromogenic aggregates of xanthene dyes

The UV absorption spectra of rhodamine B and G molecules isolated from industrial dye samples were obtained. Two procedures were used. In one of them, rhodamine B molecules were displaced with water into a heptane layer from a solution of the dye in an alcohol-heptane mixture. The second procedure involved heating of the dye introduced into cellulose triacetate films. Individual rhodamine molecules (namely, dye cation-chlorine anion ion pairs) prepared by both methods did not absorb visible light. The spectra of individual rhodamine molecules coincided with the spectra of so-called pseudoleucobases of xanthene dyes reported in the literature. The conclusion was drawn that the chromaticity property in the series of xanthene dyes appeared because of the formation of supramolecular dimeric and larger aggregates, as was earlier established for triphenylmethane dyes (TPMDs) and copper phthalocyanine (CuPc). At the same time, individual xanthene dye molecules, like TPMD and CuPc molecules, are not chromogens.     

Photogeneration of holes and electrons in amorphous molecular semiconductors with neutral and ionic organic dyes

Photoconducting properties of amorphous molecular semiconductors based on polystyrene films doped with tetranitrofluorenone and merocyanine or an anionic polymethine dye, or with epoxypropylcarbazole and merocyanine or a cationic polymethine dye were studied. The former type of the films is characterized by electron conductivity, whereas the latter type by hole conductivity. The activation energy for photogeneration of mobile charge carriers increases on passing from a merocyanine dye to ionic dyes and decreases with a growth in quantum energy of excitation light for the films of the former type, but does not depend on the light quantum energy for the films of the latter type. It was concluded that the activation energy of photogeneration is determined by electrostatic interaction of a photogenerated charge carrier with the ionized photogeneration site or a counterion for neutral and ionic dyes, respectively. At low dissipation rates of the excess thermal energy of excited dye molecules via electron-nucleus interaction, photogenerated electrons have a possibility to travel over a long distance from the photogeneration site as compared with holes.__________Translated from Khimiya Vysokikh Energii, Vol. 39, No. 3, 2005, pp. 195–203.Original Russian Text Copyright © 2005 by Davidenko, Derevyanko, Zabolotnyi, Ishchenko, Kuvshinskii, Studzinskii.     

Adsorption and kinetic studies of cationic and anionic dyes on pyrophyllite from aqueous solutions

The adsorption of cationic Methylene Blue (MB) and anionic Procion Crimson H-EXL (PC) dyes from aqueous medium on pyrophyllite was studied. Changes in the electrokinetics of pyrophyllite as a function of pH were investigated in the absence and presence of multivalent cations. The results show that pyrophyllite in water exhibits a negative surface charge within the range pH 2-12. Pyrophyllite is found to be a novel adsorbent for versatile removal of cationic and anionic dyes. The negative hydrophilic surface sites of pyrophyllite are responsible for the adsorption of cationic MB molecules. The adsorption of anionic PC dye is possible after a charge reversal by the addition of trivalent cation of Al. Nearly 2 min of contact time are found to be sufficient for the adsorption of both dyes to reach equilibrium. The experimental data follow a Langmuir isotherm with adsorption capacities of 70.42 and 71.43 mg dye per gram of pyrophyllite for MB and PC, respectively. For the adsorption of both MB and PC dyes, the pseudo-second-order chemical reaction kinetics provides the best correlation of the experimental data.     

Multilinear regression and comparative molecular field analysis (CoMFA) of azo dye-fiber affinities. 2. Inclusion of solution-phase molecular orbital descriptors

For a data set with 30 direct azo dyes taken from literature, quantitative structure-activity relationship (QSAR) analyses have been performed to model the affinity of the dye molecules for the cellulose fiber. The electronic structure of the compounds was characterized using quantum chemical gas-phase (AM1) and continuum-solvation molecular orbital parameters. As regards the solution phase, COSMO appears to be better suited than SM2 in quantifying relative trends of the aqueous solvation energy. For the dye-fiber affinity, the leave-one-out prediction capability of multilinear regression equations is superior to CoMFA, with predictive squared correlation coefficients ranging from 0.63 (pure CoMFA) to 0.89. At the same time, solution-phase CoMFA is superior to previously derived AM1-based CoMFA models. As a general trend, the dye-fiber affinity increases with increasing electron donor capacity that corresponds to an increasing hydrogen bond acceptor strength of the azo dyes. The discussion includes the consideration of structural features that are likely to be involved in dye-fiber and dye-dye hydrogen bonding interactions, and possible links between CoMFA electrostatic results and the atomic charge distribution of the compounds.     

Molecular imprinting on amphiphilic folded polymers for selective molecular recognition in water

We report amphiphilic folded polymers with imprinted nanocavities for selective molecular recognition in water. For this, a molecular imprinting technique is applied to the polymer synthesis: amphiphilic polymer micelles interacting with template molecules are crosslinked in water to fix the folded architecture and memorize the template structure within the polymers; the removal of the templates provides imprint polymers bearing template-specific nanospaces. Here, a hydrophilic dye bearing two anionic groups, Orange G (OG), is used as a model template. For the imprinting, we design amphiphilic random copolymers bearing hydrophilic poly(ethylene glycol) (PEG) chains, hydrophobic olefin groups, and quaternary ammonium groups that can interact with the template. The copolymers were prepared by living radical polymerization and post functionalization. In the presence of OG and methyl blue (MB), the imprinted nanocavity polymers simultaneously capture both of the dyes in water. The total number of encapsulated dyes increased with increasing the number of polymer-bound quaternary ammonium groups. The selectivity of OG against MB increased with the crosslinking density, while imprint polymers encapsulated OG more efficiently than nonimprint polymers. © 2020 Wiley Periodicals, Inc. J. Polym. Sci. 2020 , 58, 215–224     

Theoretical investigation of azo dyes adsorbed on cellulose fibers: 1. Electronic and bonding structures

Structural, bonding and electronic characteristics of complexes of anthraquinone and 1-arylazo-2-naphtol dyes and cellulose I _β are studied using B3LYP density functional method with 6-31G** basis set based on the partially and fully optimized structures. Results reveal that for both partially and fully optimized complexes, there is a stabilizing attraction between dyes and cellulose surface. The hydrazone (Hy) tautomer in anionic state (Hy–SO₃ ^?) shows the strongest interaction with the cellulose surface. Natural bond orbital (NBO) and atoms-in-molecules (AIM) analyses have been carried out to study the nature of azo dyes-cellulose bonds in detail. According to NBO analysis, a remarkable charge transfer occurs between the –SO₃ ^? and –SO₃H functional groups of the dye and the cellulose surface which can be regarded as the main source of the large dye–cellulose interaction energy. AIM analysis confirms the existence of hydrogen and van der Waals bonds between the azo dyes and cellulose. Furthermore, a very good agreement is observed between the number of hydrogen bonding sites and dye–cellulose interaction energies.     

Effect of molecular structure of a dichroic dye and the ordering of a liquid crystal on the dichroism of the dye-liquid crystal binary mixtures

The orientational ordering of dyes doped into liquid crystals has been investigated. The experimental results show that the ordering of the dyes can be expressed as a function of the order parameter of the liquid crystal host and the molecular structure of the dye. In addition a theory of the ordering of molecules in a binary mixture system has been derived by extending Kimura's theory. The validity of the theory has been confirmed by comparison with the experimental results using various combination of azo dyes and liquid crystals.     

Effect of molecular structure of a dichroic dye and the ordering of a liquid crystal on the dichroism of the dye-liquid crystal binary mixtures

The orientational ordering of dyes doped into liquid crystals has been investigated. The experimental results show that the ordering of the dyes can be expressed as a function of the order parameter of the liquid crystal host and the molecular structure of the dye. In addition a theory of the ordering of molecules in a binary mixture system has been derived by extending Kimura's theory. The validity of the theory has been confirmed by comparison with the experimental results using various combination of azo dyes and liquid crystals.     

Steric and electrostatic effects in dye-cellulose interactions by the MTD and CoMFA approaches

This paper presents the application of the MTD (minimal steric difference) analysis and CoMFA (comparative molecular field analysis) to series of anthraquinone vat, mono and disazo and disperses dyes with known affinities for cellulose fiber. A comparison of the results demonstrates that these methods usually agree with the prediction of structural features favorable for dyeing. A series of n = 49 anthraquinone vat dyes was studied by MTD with r2 between 0.903 and 0.941 and r2CV values in the range of 0.827-0.878. For CoMFA, r2 = 0.992, r2CV = 0.841 were obtained; the CoMFA field is in rather good agreement with vertex attributions, by MTD for attractive and repulsive vertices. Anionic disazo dyes were studied by the CoMFA method (n = 21, r2 = 0.999, r2CV = 0.703). Monoazo dyes (several series) were studied by CoMFA and MTD. The effect of lipophilicity on dye fiber affinity was, also, studied for these dyes. Disperse dye adsorption was analyzed by MTD and CoMFA (n = 27, r2 = 0.925, r2CV = 0.776). Conclusions refer to the effect of structural features of dye molecules upon adsorption on cellulose fibers.     

二氢吲哚类染料用于染料敏化太阳能电池光敏剂的比较

采用密度泛函理论(DFT)和含时密度泛函理论(TD-DFT)对四种二氢吲哚染料进行研究, 从中筛选出相对优秀的染料敏化太阳能电池光敏剂. 对前线分子轨道的计算表明, 二氢吲哚染料的前线分子轨道结构非常有利于染料激发态向TiO2电极的电子注入. 对真空中的紫外和可见光吸收光谱的计算表明, 二氢吲哚染料的吸收光谱与太阳辐射光谱匹配较好. 对染料分子的能级计算表明, 二氢吲哚染料的能级结构比较适合于I-/I-3作电解液的TiO2纳米晶太阳能电池的光敏剂. 二氢吲哚染料最低未占据分子轨道(LUMO) 能级均比TiO2晶体导带边能级高, 能够保证激发态染料分子高效地向TiO2电极转移电子. 二氢吲哚染料最高占据分子轨道(HOMO)的能级比I-/I-3能级低, 保证了失去电子的染料分子能够顺利地从电解液中得到电子. 与实验数据比较, 得出在提高染料敏化太阳能电池转换效率方面, 对染料的关键要求是LUMO能级的位置. 染料分子的稳定性是染料敏化太阳能电池使用寿命的关键因素. 通过对化学键键长的比较表明, 二氢吲哚染料的分子稳定性基本相同. 对计算结果的分析表明, 二氢吲哚染料1(ID1)的LUMO能级最高, 分子稳定性最好, 在酒精溶液中的吸收光谱与太阳辐射光谱匹配很好, 在同类染料中是较好的染料敏化太阳能电池光敏剂.     

Comparative study of organic dyes with time-of-flight static secondary ion mass spectrometry and related techniques

A series of cationic, zwitterionic and anionic fluorinated carbocyanine dyes, spin-coated on Si substrates, were measured with time-of-flight static secondary ion mass spectrometry (TOF-S-SIMS) under Ga(+) primary ion bombardment. Detailed fragmentation patterns were developed for all dyes measured. In the positive mode, the resulting spectra showed very intense signals for the precursor ions of the cationic dyes, whereas the protonated signals of the anionic dyes were hardly detected. Differences of three orders of magnitude were repeatedly observed for the secondary ion signal intensities of cationic and anionic dyes, respectively. All measured dyes yielded mass spectra containing several characteristic fragment ions. Although the secondary ion yields were still higher for the cationic than the anionic dye fragments, the difference was reduced to a factor of < or =10. This result and the fact that M(+), [M + H](+) or [M + 2H](+) are even-electron species make it very likely that the recorded fragments were not formed directly out of the (protonated) parent ions M(+), [M + H](+) or [M + 2H](+). In the negative mode, none of the recorded spectra contained molecular information. Only signals originating from some characteristic elements of the molecules (F, Cl), the anionic counter ion signal and some low-mass organic ions were detected. A comparative study was made between TOF-S-SIMS, using Ga(+) primary ions, and other mass spectrometric techniques, namely fast atom bombardment (FAB), electrospray ionization (ESI) and matrix-assisted laser desorption/ionization (MALDI). The measurements showed that MALDI, ESI and FAB all give rise to spectra containing molecular ion signals. ESI and FAB produced M(+) and [M + H](+) signals, originating from the cationic and zwitterionic dyes, in the positive mode and M(-) and [M - H](-) signals of the anionic and zwitterionic dyes in the negative mode. With MALDI, molecular ion signals were measured in both modes for all the dyes. Structural fragment ions were detected for FAB, ESI and MALDI in both the positive and negative modes. Compared with the other techniques, TOF-S-SIMS induced a higher degree of fragmentation.     

Spectroscopic studies of the intermolecular interactions of Congo red and tinopal CBS with modified cellulose fibers

The adsorption of Congo red and tinopal CBS dyes on cellulose fibers was investigated using electronic absorption and fluorescence spectroscopies. Hydrogen bonds appear to be relevant for the dye-fiber interactions as indicated by the solvatochromism of Congo red in water, methanol, and dimethyl sulfoxide solutions, and when adsorbed on cellulose fibers. We also demonstrate that electrostatic interactions play an important role in the dye-medium interaction, through the analysis of absorption spectra of Congo red and fluorescence spectra of tinopal in aqueous solutions containing salt and in layer-by-layer nanostructured films with poly(allylamine hydrochloride). For instance, dye adsorption was enhanced when salt was added to the dipping solution, which was explained by the synergistic effect between the conformational changes of the cellulose and changes in the solvation layer around the cellulose chains and around dye molecules. On the basis of the fluorescence results for tinopal CBS, we inferred that dye aggregation is not relevant for adsorption on the fibers. In addition, fluorescence spectroscopy is proven very sensitive for studying the organization of dye molecules in layer-by-layer films, particularly those undergoing irreversible structural changes.     

Planarity recognition of cationic dyes by anionic, crystalline bilayer aggregates

Steric selectivity in terms of molecular planarity of cationic dyes was investigated using anionic bilayer aggregates. Planar cationic dye (para-type stilbazolium) could be incorporated into the hydrophobic region of anionic crystalline bilayer aggregates, whereas structurally related, less planar dyes (ortho-type stilbazolium) could not be incorporated in spite of somewhat higher hydrophobicity resulting from lengthening of the N-alkyl group.     

Steric and electrostatic effects in dye-cellulose interactions by the MTD and CoMFA approaches

This paper presents the application of the MTD (minimal steric difference) analysis and CoMFA (comparative molecular field analysis) to series of anthraquinone vat, mono and disazo and disperses dyes with known affinities for cellulose fiber. A comparison of the results demonstrates that these methods usually agree with the prediction of structural features favorable for dyeing. A series of n =49 anthraquinone vat dyes was studied by MTD with r 2 between 0.903 and 0.941 and r CV 2 values in the range of 0.827-0.878. For CoMFA, r 2 =0.992, r CV 2 =0.841 were obtained; the CoMFA field is in rather good agreement with vertex attributions, by MTD for attractive and repulsive vertices. Anionic disazo dyes were studied by the CoMFA method ( n =21, r 2 =0.999, r CV 2 =0.703). Monoazo dyes (several series) were studied by CoMFA and MTD. The effect of lipophilicity on dye fiber affinity was, also, studied for these dyes. Disperse dye adsorption was analyzed by MTD and CoMFA ( n =27, r 2 =0.925, r CV 2 =0.776). Conclusions refer to the effect of structural features of dye molecules upon adsorption on cellulose fibers.