基于深度神经网络的时空编码磁共振成像超分辨率重建方法

单扫描时空编码磁共振成像是一种新型超快速磁共振成像技术,它对磁场不均匀和化学位移伪影有较强的抵抗性,但是其固有的空间分辨率较低,因此通常需要进行超分辨率重建,以在不增加采样点数的情况下提高时空编码磁共振图像的空间分辨率.然而,现有的重建方法存在迭代求解时间长、重建结果有混叠伪影残留等问题.为此,本文提出了一种基于深度神经网络的单扫描时空编码磁共振成像超分辨率重建方法.该方法采用模拟样本训练深度神经网络,再利用训练好的网络模型对实际采样信号进行重建.数值模拟、水模和活体鼠脑的实验结果表明,该方法能快速重建出无残留混叠伪影、纹理信息清楚的超分辨率时空编码磁共振图像.适当增加训练样本数量以及在训练样本中加入适当的随机噪声水平,有助于改善重建效果.     

基于PCAU-Net的快速多通道磁共振成像方法

多通道磁共振成像方法采用多个接收线圈同时欠采样k空间以加快成像速度,并基于后处理算法重建图像,但在较高加速因子时,其图像重建质量仍然较差．本文提出了一种基于PCAU-Net的快速多通道磁共振成像方法,将单通道实数U型卷积神经网络拓展到多通道复数卷积神经网络,设计了一种结构不对称的U型网络结构,通过在解码部分减小网络规模以降低模型的复杂度．PCAU-Net网络在跳跃连接前增加了1×1卷积,以实现跨通道信息交互．输入和输出之间利用残差连接为误差的反向传播提供捷径．实验结果表明,使用规则和随机采样模板,在不同加速因子时,相比常规的GRAPPA重建算法和SPIRiT重建方法,本文提出的PCAU-Net方法可高质量重建出磁共振复数图像,并且相比于PCU-Net方法,PCAU-Net减少了模型参数、缩短了训练时间．     

基于支撑先验与深度图像先验的无预训练磁共振图像重建方法

基于深度学习的磁共振成像(magnetic resonance imaging, MRI)方法需要大规模、高质量的病患数据样本集进行预训练.然而,由于病患隐私及设备等因素限制,获取大规模、高质量的磁共振数据集在实际临床应用中面临挑战.本文提出一种新的基于深度学习的欠采样磁共振图像重建方法,该方法无需预训练、不依赖训练数据集,而是充分利用待重建的目标MR图像的结构先验和支撑先验,并将其引入深度图像先验(deep image prior, DIP)框架,从而削减对训练数据集的依赖,提升学习效率.基于参考图像与目标图像的相似性,采用高分辨率参考图像作为深度网络输入,将结构先验信息引入网络;将参考图像在小波域中幅值大的系数索引集作为目标图像的已知支撑集,构造正则化约束项,将网络训练转化为网络参数的最优化求解过程.实验结果表明,本文方法可由欠采样k空间数据重建得到更精确的磁共振图像,且在保留组织特征、细节纹理方面具有明显优势.     

一种结合并行成像和压缩感知的快速磁共振成像新方法

压缩感知（CS）技术和并行成像技术（主要是SENSE技术、GRAPPA技术等）都能通过减少k空间数据的采集量来加快磁共振成像速度,目前已有一些将两种方法相结合进一步加速磁共振成像速度的方法（例如CS-GRAPPA）.本文针对数据采集和重建这两方面对现有CS-GRAPPA方法进行了改进,采集方式上采用了局部等间隔采集模板以满足GRAPPA重建的要求,并对采集模板进行随机放置以满足CS重建的要求;数据重建时,根据自动校正数据估算GRAPPA算法中欠采行的重建误差,并利用误差的大小确定在CS算法中保真的程度.不同磁共振图像重建实验的结果表明：与现有方法相比,本文方法能够更好地保留原有图像细节并有效减少伪影.     

一种基于时空变换和压缩感知的磁共振螺旋采样的图像重建算法

螺旋采样磁共振快速成像在功能性成像、并行成像和动态成像等领域发挥着越来越重要的作用.螺旋采样图像重建的传统算法是用核函数将螺旋状分布的k空间数据插值到均匀网格中,再利用傅里叶变换和最小二乘法进行重建.但是基于网格化的算法对核函数过于依赖,在网格化过程中产生难以避免的误差.该文提出了基于时空变换和压缩感知的l1范数的最优化模型和重建算法.时空变换矩阵描述了空间上的磁共振图像与采集到的时域信号间的关系,使得算法直接使用采集到的数据作为保真约束项,避免了网格化过程产生的误差.此外,基于图像处理单元的并行计算被用来提高时空变换矩阵的运算速度,使得算法具有较强的应用价值.     

基于非均匀螺旋线数据和布雷格曼迭代的快速磁共振成像方法

数据采集时间长是制约磁共振成像技术发展的重要瓶颈.为了解决这一问题, 本文基于压缩感知成像理论, 提出了一种结合非均匀螺旋线磁共振数据采集序列和布雷格曼迭代重建的快速磁共振成像方法, 通过欠采样缩短数据采集时间.欠采样引起混迭伪影则通过非均匀螺旋线欠采样特性和布雷格曼迭代重建去除.水模磁共振成像实验和在体磁共振成像实验结果表明: 欠采样情况下, 所提出的方法能有效去除欠采样导致的混迭伪影, 获得的图像结构信息完整的成像结果, 在缩短采样时间的同时, 具有较高的准确度. 关键词： 磁共振成像 非均匀螺旋线 全变分 布雷格曼迭代     

基于正则化迭代的并行磁共振图像重建算法

为了解决并行磁共振成像过程的病态性和图像信噪比下降问题,降低重建过程中噪声放大和异常值的干扰造成的图像信噪比的损失,提出了一种基于正则化共轭梯度迭代的并行磁共振成像重建算法;该算法基于最小二乘理论,引入正则化,优化方程,进而进行迭代重建;采用了不同加速因子的人脑磁共振K空间欠采样数据以验证该算法的重建性能,仿真结果表明了该算法相较于最小二乘法,能较大限度地降低噪声对重建结果的干扰,具有信噪比更高、误差更小、成像效果更好等特征;重建图像质量得到了较好的改善,对临床诊断更具有适用性。     

双树小波变换与小波树稀疏联合的低场CS-MRI算法

压缩感知理论常用在磁共振快速成像上,仅采样少量的K空间数据即可重建出高质量的磁共振图像.压缩感知磁共振成像技术的原理是将磁共振图像重建问题建模成一个包含数据保真项、稀疏先验项和全变分项的线性组合最小化问题,显著减少磁共振扫描时间.稀疏表示是压缩感知理论的一个关键假设,重建结果很大程度上依赖于稀疏变换.本文将双树复小波变换和小波树稀疏联合作为压缩感知磁共振成像中的稀疏变换,提出了基于双树小波变换和小波树稀疏的压缩感知低场磁共振图像重建算法.实验表明,本文所提算法可以在某些磁共振图像客观评价指标中表现出一定的优势.     

基于同时多层激发和并行成像的心脏磁共振电影成像

磁共振成像（MRI）无创无害、对比度多、可以任意剖面成像的特点特别适合用于心脏成像,却因扫描时间长限制了其在临床上的应用.为了解决心脏磁共振电影成像屏气扫描时间过长的问题,该文提出了一种基于同时多层激发的多倍加速心脏磁共振电影成像及其影像重建的方法,该方法将相位调制多层激发（CAIPIRINHA）技术与并行加速（PPA）技术相结合,运用到分段采集心脏电影成像序列中,实现了在相位编码方向和选层方向的四倍加速,并使用改进的SENSE/GRAPPA算法对图像进行重建.分别在水模以及人体上进行了实验,将加速序列图像与不加速序列图像进行对比,结果验证了重建算法的有效性,表明该方法可以在保障图像质量以及准确测量心脏功能的前提下成倍节省扫描时间.     

X射线光场成像技术研究

X射线三维成像技术是目前国内外X射线成像研究领域的一个研究热点.但针对一些特殊成像目标,传统X射线计算层析(CT)成像模式易出现投影信息缺失等问题,影响CT重建的图像质量,使得CT成像的应用受到一定的限制.本文主要研究了基于光场成像理论的X射线三维立体成像技术.首先从同步辐射光源模型出发,对X射线光场成像进行建模;然后,基于光场成像数字重聚焦理论,对成像目标场在深度方向上进行切片重建.结果表明:该方法可以实现对成像目标任一视角下任一深度的内部切片重建,但是由于光学聚焦过程中的离焦现象,会引入较为严重的背景噪声.当对其原始数据进行滤波后,再进行X射线光场重聚焦,可以有效消除重建伪影,提高图像的重建质量.本研究既有算法理论意义,又可应用于工业、医疗等较复杂目标的快速检测,具有较大的应用价值.     

Deep neural network inspired by iterative shrinkage-thresholding algorithm with data consistency (NISTAD) for fast Undersampled MRI reconstruction

With the aim of developing a fast algorithm for high-quality MRI reconstruction from undersampled k-space data, we propose a novel deep neural Network, which is inspired by Iterative Shrinkage Thresholding Algorithm with Data consistency (NISTAD). NISTAD consists of three consecutive blocks: an encoding block, which models the flow graph of ISTA, a classical iteration-based compressed sensing magnetic resonance imaging (CS-MRI) method; a decoding block, which recovers the image from sparse representation; a data consistency block, which adaptively enforces consistency with the acquired raw data according to learned noise level. The ISTA method is thereby mapped to an end-to-end deep neural network, which greatly reduces the reconstruction time and simplifies the tuning of hyper-parameters, compared to conventional model-based CS-MRI methods. On the other hand, compared to general deep learning-based MRI reconstruction methods, the proposed method uses a simpler network architecture with fewer parameters. NISTAD has been validated on retrospectively undersampled diencephalon standard challenge data using different acceleration factors, and compared with DAGAN and Cascade CNN, two state-of-the-art deep neural network-based methods which outperformed many other state-of-the-art model-based and deep learning-based methods. Experimental results demonstrated that NISTAD reconstruction achieved comparable image quality with DAGAN and Cascade CNN reconstruction in terms of both PSNR and SSIM metrics, and subjective assessment, though with a simpler network structure.     

Deep learning for image reconstruction in thermoacoustic tomography

Microwave-induced thermoacoustic tomography(TAT)is a rapidly-developing noninvasive imaging technique that integrates the advantages of microwave imaging and ultrasound imaging.While an image reconstruction algorithm is critical for the TAT,current reconstruction methods often creates significant artifacts and are computationally costly.In this work,we propose a deep learning-based end-to-end image reconstruction method to achieve the direct reconstruction from the sinogram data to the initial pressure density image.We design a new network architecture TAT-Net to transfer the sinogram domain to the image domain with high accuracy.For the scenarios where realistic training data are scarce or unavailable,we use the finite element method(FEM)to generate synthetic data where the domain gap between the synthetic and realistic data is resolved through the signal processing method.The TAT-Net trained with synthetic data is evaluated through both simulations and phantom experiments and achieves competitive performance in artifact removal and robustness.Compared with other state-of-the-art reconstruction methods,the TAT-Net method can reduce the root mean square error to 0.0143,and increase the structure similarity and peak signal-to-noise ratio to 0.988 and 38.64,respectively.The results obtained indicate that the TAT-Net has great potential applications in improving image reconstruction quality and fast quantitative reconstruction.     

Transfer learning in deep neural network based under-sampled MR image reconstruction

In Magnetic Resonance Imaging (MRI), the success of deep learning-based under-sampled MR image reconstruction depends on: (i) size of the training dataset, (ii) generalization capabilities of the trained neural network. Whenever there is a mismatch between the training and testing data, there is a need to retrain the neural network from scratch with thousands of MR images obtained using the same protocol. This may not be possible in MRI as it is costly and time consuming to acquire data. In this research, a transfer learning approach i.e. end-to-end fine tuning is proposed for U-Net to address the data scarcity and generalization problems of deep learning-based MR image reconstruction. First the generalization capabilities of a pre-trained U-Net (initially trained on the human brain images of 1.5 T scanner) are assessed for: (a) MR images acquired from MRI scanners of different magnetic field strengths, (b) MR images of different anatomies and (c) MR images under-sampled by different acceleration factors. Later, end-to-end fine tuning of the pre-trained U-Net is proposed for the reconstruction of the above-mentioned MR images (i.e. (a), (b) and (c)). The results show successful reconstructions obtained from the proposed method as reflected by the Structural SIMilarity index, Root Mean Square Error, Peak Signal-to-Noise Ratio and central line profile of the reconstructed images.     

IKWI-net: A cross-domain convolutional neural network for undersampled magnetic resonance image reconstruction

Magnetic resonance imaging (MRI) is widely used to get the information of anatomical structure and physiological function with the advantages of high resolution and non-invasive scanning. But the long acquisition time limits its application. To reduce the time consumption of MRI, compressed sensing (CS) theory has been proposed to reconstruct MRI images from undersampled k-space data. But conventional CS methods mostly use iterative methods that take lots of time. Recently, deep learning methods are proposed to achieve faster reconstruction, but most of them only pay attention to a single domain, such as the image domain or k-space. To take advantage of the feature representation in different domains, we propose a cross-domain method based on deep learning, which first uses convolutional neural networks (CNNs) in the image domain, k-space and wavelet domain simultaneously. The combined order of the three domains is also first studied in this work, which has a significant effect on reconstruction. The proposed IKWI-net achieves the best performance in various combinations, which utilizes CNNs in the image domain, k-space, wavelet domain and image domain sequentially. Compared with several deep learning methods, experiments show it also achieves mean improvements of 0.91 dB in peak signal-to-noise ratio (PSNR) and 0.005 in structural similarity (SSIM).     

An unsupervised deep learning technique for susceptibility artifact correction in reversed phase-encoding EPI images

Echo planar imaging (EPI) is a fast and non-invasive magnetic resonance imaging technique that supports data acquisition at high spatial and temporal resolutions. However, susceptibility artifacts, which cause the misalignment to the underlying structural image, are unavoidable distortions in EPI. Traditional susceptibility artifact correction (SAC) methods estimate the displacement field by optimizing an objective function that involves one or more pairs of reversed phase-encoding (PE) images. The estimated displacement field is then used to unwarp the distorted images and produce the corrected images. Since this conventional approach is time-consuming, we propose an end-to-end deep learning technique, named S-Net, to correct the susceptibility artifacts the reversed-PE image pair. The proposed S-Net consists of two components: (i) a convolutional neural network to map a reversed-PE image pair to the displacement field; and (ii) a spatial transform unit to unwarp the input images and produce the corrected images. The S-Net is trained using a set of reversed-PE image pairs and an unsupervised loss function, without ground-truth data. For a new image pair of reversed-PE images, the displacement field and corrected images are obtained simultaneously by evaluating the trained S-Net directly. Evaluations on three different datasets demonstrate that S-Net can correct the susceptibility artifacts in the reversed-PE images. Compared with two state-of-the-art SAC methods (TOPUP and TISAC), the proposed S-Net runs significantly faster: 20 times faster than TISAC and 369 times faster than TOPUP, while achieving a similar correction accuracy. Consequently, S-Net accelerates the medical image processing pipelines and makes the real-time correction for MRI scanners feasible. Our proposed technique also opens up a new direction in learning-based SAC.     

Computational ghost imaging with deep compressed sensing

Computational ghost imaging (CGI) provides an elegant framework for indirect imaging, but its application has been restricted by low imaging performance. Herein, we propose a novel approach that significantly improves the imaging performance of CGI. In this scheme, we optimize the conventional CGI data processing algorithm by using a novel compressed sensing (CS) algorithm based on a deep convolution generative adversarial network (DCGAN). CS is used to process the data output by a conventional CGI device. The processed data are trained by a DCGAN to reconstruct the image. Qualitative and quantitative results show that this method significantly improves the quality of reconstructed images by jointly training a generator and the optimization process for reconstruction via meta-learning. Moreover, the background noise can be eliminated well by this method.     

Efficient implementation of x-ray ghost imaging based on a modified compressive sensing algorithm

Towards efficient implementation of x-ray ghost imaging (XGI), efficient data acquisition and fast image reconstruction together with high image quality are preferred. In view of radiation dose resulted from the incident x-rays, fewer measurements with sufficient signal-to-noise ratio (SNR) are always anticipated. Available methods based on linear and compressive sensing algorithms cannot meet all the requirements simultaneously. In this paper, a method based on a modified compressive sensing algorithm with conjugate gradient descent method (CGDGI) is developed to solve the problems encountered in available XGI methods. Simulation and experiments demonstrate the practicability of CGDGI-based method for the efficient implementation of XGI. The image reconstruction time of sub-second implicates that the proposed method has the potential for real-time XGI.     

相干场成像全相位目标直接重构法

回波信号处理和目标重构算法是相干场成像中的核心数据处理技术, 直接影响系统的成像质量. 基于全相位谱分析理论, 提出一种新的系统融合处理算法, 对接收端回波信号直接提取全相位谱相位及幅值信息实现目标图像重构, 能够有效抑制各种因素带来的频率误差. 经室外实验系统验证, 成像能力大大优于传统重构算法, 重构目标分辨率接近理论极限值.