Photophysical properties of BODIPY-derived hydroxyaryl fluorescent pH probes in solution.

The photophysical properties of five fluorescent pH probes derived from 4,4-difluoro-4-bora-3a,4a-diaza-s-indacene with phenolic or naphtholic subunits at position 8 and with substituents having different electron driving forces at positions 3 and 5 have been investigated in several organic solvents, by means of absorption, steady-state, and time-resolved fluorimetry. For each compound, the fluorescence quantum yield and lifetime are lower in solvents with higher polarity, owing to an increase in the rate of nonradiative deactivation. The rate constants for radiative deactivation, k(f), are nearly constant for all dyes in all solvents studied [k(f)=(1.7+/-0.2)x10(8) s(-1)]. In aqueous solution, these probes undergo a reversible protonation-deprotonation in the near-neutral to basic pH range, producing intensity increases with lower pH. The pK(a) values of the indicators are between 7.5 and 9.3, depending on the substitution pattern on positions 3, 5, and 8. The difference between the absorption and excitation spectra as a function of pH is indicative of the presence of two species in aqueous solution: the phenol- or naphthol-based indicator and its conjugate base.     

Synthesis and spectroscopic characterisation of BODIPY based fluorescent off-on indicators with low affinity for calcium

Two fluorescent off-on Ca2+ indicators based on APTRA (o-aminophenol-N,N,O-triacetic acid) as low-affinity ligand for Ca2+ and BODIPY(4,4-difluoro-4-bora-3a,4a-diaza-s-indacene) as a fluorophore were synthesized. The new BODIPY-APTRA compounds absorb in the visible spectrum, with absorption maxima from 505 nm to 570 nm, and have fluorescence spectra that span the visible spectrum, with emission maxima ranging from 525 nm to 625 nm dependent on the substituents at the alpha-positions to the nitrogen atoms. The indicators show a large increase of the fluorescence quantum yield upon increasing Ca2+ concentration. The ground-state dissociation constants Kd estimated at 20 degrees C in 100 mM KCl aqueous buffered solution, pH 7.20, for the two complexes with Ca2+ were found to be around 100 microM.     

8-Hydroxyquinoline-substituted boron-dipyrromethene compounds: synthesis, structure, and OFF-ON-OFF type of pH-sensing properties

A series of four novel 8-hydroxyquinoline-substituted boron-dipyrromethene derivatives, namely 4,4-difluoro-8-(5-(8-hydroxyquinoline))-3,5-dimethyl-4-bora-3a,4a-diaza-s-indacene (1), 4,4-difluoro-8-(5-(8-hydroxyquinoline))-1,3,5,7-tetramethyl-4-bora-3a,4a-diaza-s-indacene (2), 4,4-difluoro-8-(5-azastyryl-(8-hydroxyquinoline))-3,5-dimethyl-4-bora-3a,4a-diaza-s-indacene (3), and 4,4-difluoro-8-(5-azastyryl-(8-hydroxyquinoline))-1,3,5,7-tetramethyl-4-bora-3a,4a-diaza-s-indacene (4), have been synthesized and characterized by a series of spectroscopic methods. The molecular structures of 1 and 2 have been determined by single-crystal X-ray diffraction analyses. The two methyl substituents attached at C-1 and C-7 positions of boron-dipyrromethene (Bodipy) in compound 2 was revealed to prevent the free rotation of the 8-hydroxyquinoline (8-HQ) moiety, resulting in an almost vertical 8-HQ-Bodipy configuration of this compound. This is obviously different from those for 1 with the dihedral angle between 8-hydroxyquinoline and Bodipy moieties of 65.44 and 66.79° due to the lack of methyl substituents in the latter compound. The intense fluorescence from the Bodipy subunit of these compounds was revealed to gradually get diminished along with either decreasing or increasing the pH value under acidic and basic conditions, respectively, in particular for 1, 2, and 4 because of the photoinduced intramolecular electron transfer from excited Bodipy moiety to 8-HQ unit and just an opposite process. This renders these compounds the first OFF-ON-OFF type of pH-dependent fluorescent sensors. Nevertheless, both the intrinsic fluorescence of these compounds and their fluorescent quenching properties along with the change in the pH value have been found to depend on the steric configuration as well as the linking group between 8-hydroxyquinoline and Bodipy moieties, revealing the effect of molecular structure on their fluorescence properties.     

Synthesis and properties of novel fluorescent switches

[reaction: see text] Photochromic dithienylethene moieties were covalently attached to fluorescent 4,4-difluoro-8-(4'-iodophenyl)-1,3,5,7-tetramethyl-4-bora-3a,4a-diaza-s-indacene (iodo-BODIPY) via a phenylacetylene linker. UV light induced isomerization of the photochrome results in significant decrease in fluorescence intensity. This fluorescence can be recovered with visible light. Steady-state fluorescence measurements demonstrate that the emission of the dye can be modulated by external light. An intramolecular energy transfer mechanism accounts for the fluorescence quenching in the UV light produced isomers.     

A new selective fluorescent probe for lead ions

A new fluorescent probe(BPbl) for Pb~(2+) has been synthesized,where diethanolamine(receptor) is linked with 4,4-difluoro-4-bora-3a, 4a-diaza-s-indacene(BODIPY)(fluorophore) via a methylene group(spacer).The absorption(496 nm) and emission (505 nm) wavelengths are in visible range.The fluorescence quantum yields of the lead-free and lead-bound states of BPb_1 in acetonitrile are 0.013 and 0.693,respectively.The large chelation enhanced fluorescence effect(CHEF) with Pb~(2+) can be explained by the blocki...     

Optical effects of S-oxidation and M(n+) binding in meso-thienyl dipyrrin systems and of stepwise bromination of 4,4-difluoro-8-(2,5-dibromo-3-thienyl)-4-bora-3a,4a-diaza-s-indacene

We report 16 novel species and 8 molecular structures in studying how meso-thienyl-substituted dipyrrole oxidation, bromination, and metal ion binding impart optical changes, as monitored by UV-vis absorption/emission spectroscopy. Treatment of 4,4-difluoro-8-(3-benzothienyl)-4-bora-3a,4a-diaza-s-indacene (varphi(F) = 0.19) with m-CPBA gives selective S-dioxidation (varphi(F) = 0.006). Results of titrations of transition metal- and "scorpionate"-like dipyrrin species varied under room temperature treatment of m-CPBA. Ni-(thienyl-dipyrrin)(n) (n = 2) degraded significantly in the presence of m-CPBA, whereas related species (M = Cu, Fe, Co; n = 2, 3) were inert. meso-Thienyl group properties were revealed through the use of 3,4,4-triphenyl-8-(thienyl)-4-bora-3a,4a-diaza-s-indacene; Cu(2+) addition resulted in smooth absorption decreases which were modeled to support 1:1 substrate:M(2+) binding; for Hg(2+) 1:2 substrate:M(2+) binding was found. Treatment of 4,4-difluoro-8-(2,5-dibromo-3-thienyl)-4-bora-3a,4a-diaza-s-indacene with Br(2) gave red-shifted UV-vis absorption band features that grow with increasing dipyrrin bromination. Structures of the di- and tetra-substituted bromination products were obtained.     

Quantum Chemical Modeling of the Spectral Properties of a BODIPY Dye with Different Substituents

Russian Journal of Physical Chemistry A - The effect strong electron-donating substituents (3- and 4-aminophenyl groups) in positions 3 and 5 of the dye 4,4-difluoro-4-bora-3a,4a-diaza-s-indacene...     

高通量微孔板DAMBO-P~H荧光检测一氧化氮

一氧化氮(NO)是生物体内的一种重要生物信号传导分子,广泛参与生物体内多种生理及病理过程.为建立快速高效、准确检测生物体释放NO的分析方法,本文选用高灵敏度、高选择性的NO特异性荧光探针8-(3,4-diaminophenyl)-2,6-bis(2-carboxyethyl)-4,4-difluoro-1,3,5,7-tetramethyl-4- bora-3a,4a-diaza-s-indacene (DAMBO-P~H),激发波长和发射波长分别为520 nm和535 nm,以高通量微孔板(384孔)作为实验工具载体.该方法荧光强度与NO浓度在8.0×10~(-10)～8.0×10~(-7) mol·~(-1)范围内呈良好线性关系,R=0.9989,检出限为0.18 nmol·~(-1),回收率为98%～102%.该方法应用于多种生物样品中释放NO的分析检测,结果令人满意.     

4,4-Difluoro-4-bora-3a,4a-diaza-s-indacene (BODIPY) dyes modified for extended conjugation and restricted bond rotations

Five new, constrained, aryl-substituted 4,4-difluoro-4-bora-3a, 4a-diaza-s-indacene (BODIPY) dyes (3f,g and 4h-j) were prepared and investigated to see if they have more favorable fluorescence characteristics than the unconstrained systems 2 that were prepared in previous studies. Dye types 3 and 4 have relatively rigid conformations caused by the heteroatom (3f and 3g) or ethylene bridge (4h-j) linkers that preclude free rotation of the substituted-benzene molecular fragments. In the event, the new dye types 3 and 4 have longer lambda(max abs) (620-660 nm) and lambda(max)(fluor) (630-680 nm) values than compounds 2. They also exhibit higher extinction coefficients (>100 000 M(-1) cm(-1), except for 3g). Their fluorescent quantum yields are high (up to 0.72 for 4j), with the exception of compound 3g, which has a quantum yield of only 0.05. The redox properties of dyes 3 and 4 have also been examined.     

Synthesis and photophysical studies of heteroaryl substituted-BODIPy derivatives for biological applications

Mono and di-heteroaryl-4,4′-difluoro-8-(aryl)-4-bora-3a,4a-diaza-s-indacene (BODIPy) (1–5) were synthesized using Suzuki–Miyaura couplings. Hetero aryl substitution on 3- or 3,5-positions caused large bathochromic shifts (up to ∼150 nm) in absorption (569–652 nm) and fluorescence maxima (586–679 nm) in comparison to classical BODIPy. Quantum yields were found to be as high as 0.65. Singlet oxygen production activities of these compounds were studied by monitoring the absorbance quenching of 1,3-diphenylisobenzofuran, on exposure to light (>600 nm). Cellular uptake of compound 4 was demonstrated using cervical cancer cells and fibroblast cell line and was confirmed by the images obtained using confocal microscope.     

A colorimetric probe for the selective naked-eye detection of Pb(II) ions in aqueous media

A new colorimetric molecular probe based on a 4,4-difluoro-4-bora-3a,4a-diaza-s-indacene (BODIPY) dye selectively binds Pb(II) ions in aqueous solutions, allowing for highly sensitive naked-eye detection.     

New BODIPY derivatives as OFF-ON fluorescent chemosensor and fluorescent chemodosimeter for Cu2+: cooperative selectivity enhancement toward Cu2+

New 4,4-difluoro-4-bora-3a,4a-diaza-s-indacene (BODIPY) derivatives (1 and 2) were synthesized as an "off-on" fluorescent chemosensor and fluorescent chemodosimeter for Cu2+ and Pb2+. Compound 1 displayed selective and large chelation enhanced fluorescence effects with Pb2+ and Cu2+ among the metal ions examined. On the other hand, compound 2, a fluorescent chemodosimeter, effectively recognized Cu2+ via a selective hydrolysis of the acetyl group.     

Photodynamic therapy based on organic small molecular fluorescent dyes

This review aims to provide a summary of the progress in organic small molecular fluorescent dyes for photodynamic therapy in recent years and it is classified according to the structures of dyes including cyanines, phthalocyanine, BODIPYs and other agents.     

Photodynamic therapy based on organic small molecular fluorescent dyes

Photodynamic therapy (PDT) has shown promise as an effective treatment modality for cancer and other localized diseases due to its noninvasive properties and spatiotemporal selectivity. Near-infrared (NIR) fluorescent dyes based on organic small molecules are characterized with low cytotoxicity, good biocompatibility and excellent phototoxicity, which are widely used in PDT. In this review, we attempt to summarize the development of imaging-induced PDT based on organic small molecules and classify it according to the structures of dyes including cyanines, 4,4-difluoro-4-bora-3a,4a-diaza-s-indacene (BODIPY) analogues, phthalocyanine and other agents such as rhodamine analogues.     

Photophysical properties of borondipyrromethene analogues in solution

The photophysical properties of seven new 8-(p-substituted)phenyl analogues of 4,4-difluoro-3,5-dimethyl-8-(aryl)-4-bora-3a,4a-diaza-s-indacene (derivatives of the well-known fluorophore BODIPY) in several solvents have been studied by means of absorption and steady-state and time-resolved fluorimetry. For each compound, the fluorescence quantum yield and lifetime are lower in solvents with higher polarity owing to an increase in the rate of nonradiative deactivation. Increasing the electron withdrawing strength of the p-substituent on the phenyl group in position 8 also leads to lower fluorescence quantum yields and lifetimes. When the p-substituent on the phenyl group in position 8 is a tertiary amine [8-(4-piperidinophenyl), 8-(4-N,N-dimethylaminophenyl), and 8-(4-morpholinophenyl)], the low quantum yields of these compounds in more polar solvents can be rationalized by the inversion of the energy levels of an apolar, highly fluorescent and a polar, nonfluorescent excited state, where charge transfer from the tertiary amine to the BODIPY unit occurs. These amine analogues can be protonated at low pH in aqueous solution. Fluorescence titrations yielded pK(a) values of their conjugate ammonium salts which are in agreement with the electron donating tendency of the amine group: piperidino (4.15) > dimethylamino (2.37) > morpholino (1.47), with the pK(a) values in parentheses. The rate constant of radiative deactivation (k(f)) is the same for all compounds in all solvents studied (k(f) = 1.4 x 10(8) s(-1)).     

Syntheses and spectral properties of functionalized, water-soluble BODIPY derivatives

The objective of this work was to form water-soluble 4,4-difluoro-4-bora-3a,4a-diaza-s-indacene (BODIPY) derivatives. Sulfonation conditions were developed for several BODIPY dyes to give the monosulfonated products 1a-3a and the disulfonated products 1b-3b. Compounds 1 are functionalized with an aryl iodide for organometallic couplings. Similarly, 2 has an aromatic bromide but also two chlorine atoms that could be replaced via SNAr reactions. The amine 3 is amenable to couple to biomolecules via acylation reactions. A diazotization/azide reaction sequence was used to convert the amines 3 into azides 4; the latter may be functionalized via click reactions as illustrated by conversion of 4b into 5. Compound 5 was designed to have an acid-functional group to facilitate activation and coupling to amines. Spectral data for these materials indicate they are highly fluorescent probes in aqueous environments.     

一种新型检测铜离子和磷酸氢根阴离子的荧光逻辑门探针

报道了一种中位-联吡啶取代的4,4-二氟-4-硼-3a,4a-二氮-s-因达省(简称BODIPY)1的合成与离子识别性能。化合物1在加入Cu2+后,荧光被猝灭,加入HPO42-能使这种荧光恢复,而且对Cu2+和HPO42-有着很高的专一性识别。表明化合物1是一种新型的荧光逻辑门探针。     

Spectroscopic response of ferrocene derivatives bearing a BODIPY moiety to water: a new dissociation reaction

Ferrocence and its derivatives have long been known to be a class of stable organometallic compounds, and their dissociation usually occurs under harsh conditions. Here we report a new type of ferrocene derivatives, 4,4-difluoro-8-ferrocenyl-1,3,5,7-tetramethyl-4-bora-3a,4a-diaza-s-indacene and 4,4-difluoro-2,6-diethyl-8-ferrocenyl-1,3,5,7-tetramethyl-4-bora-3a,4a-diaza-s-indacene, which surprisingly can hydrolyze under mild conditions. These two derivatives, initially developed as donor-acceptor probes for reactive oxygen species by incorporating the electron donor of ferrocene as a quencher into the fluorophore of BODIPY (boron dipyrromethene difluoride), barely emit fluorescence. Upon reaction with H(2)O under the irradiation of natural light at room temperature, however, both of the probes display a dramatic color change and fluorescence retrievement. Detailed experimental results reveal that the reaction of the probes with H(2)O leads to the removal of a cyclopentadiene unit and iron(II), yielding a BODIPY derivative that retains the other cyclopentadiene unit and shows a large fluorescence enhancement (over 100-fold). Moreover, the increase in fluorescence intensity is directly proportional to microamount of water, and the presence of both light and H(2)O is indispensable in the reaction, which makes the present system of great potential not only for determining water but also for forming a AND logic gate. Most importantly, the present mild dissociation reaction may give a new insight into the stability of ferrocene and its derivatives.     

Methacrylate-tethered analogs of the laser dye PM567--synthesis,copolymerization with methyl methacrylate and photostability of the copolymers

The synthesis and characterization of new analogs of the laser dye PM567 (4,4-difluoro-1,3,5,7,8-pentamethyl-2,6-diethyl-4-bora-3a,4a-diaza-s-indacene) with the 8-position substituted by a linear chain with n methylenes (n = 1, 3, 5, 10 or 15) tethered with an acetoxy or methacryloyloxy group (PnAc and PnMA, respectively) is described. The monomeric dyes PnMA have been successfully copolymerized with methyl methacrylate (MMA), yielding linear copolymers of high optical quality where the covalently bonded chromophore is separated from the polymeric main chain by a spacer of variable length. The photostability of the solid polymeric materials under UV (310 nm) irradiation (method ASTM G 53-77) has been compared with those of the model dyes PnAc and PM567 as solid solutions in poly-MMA (PnAc-PMMA and PM567-PMMA, respectively). In all the cases, the chromophore bound to the polymer is more photostable than that simply dissolved in the same polymer, with photodegradation quantum yields in the range 2.3 x 10(-5) to 4.8 x 10(-5), which was interpreted as due to additional modes for the dissipation of the absorbed energy along the polymeric chain. In both polymer solutions and copolymers, the length of the polymethylene chain has low or null influence on the photostability. In ethanol solution, PnAc model dyes with polymethylene chains with three or more methylene groups show about the same photostability; this is of an order of magnitude higher than that of the parent dyes P1Ac and PM567 in the same solvent.     

Design and synthesis of fluorescent pilicides and curlicides: bioactive tools to study bacterial virulence mechanisms

Pilicides and curlicides are compounds that block the formation of the virulence factors pili and curli, respectively. To facilitate studies of the interaction between these compounds and the pili and curli assembly systems, fluorescent pilicides and curlicides have been synthesized. This was achieved by using a strategy based on structure-activity knowledge, in which key pilicide and curlicide substituents on the ring-fused dihydrothiazolo 2-pyridone central fragment were replaced by fluorophores. Several of the resulting fluorescent compounds had improved activities as measured in pili- and curli-dependent biofilm assays. We created fluorescent pilicides and curlicides by introducing coumarin and 4,4-difluoro-4-bora-3a,4a-diaza-s-indacene (BODIPY) fluorophores at two positions on the peptidomimetic pilicide and curlicide central fragment. Fluorescence images of the uropathogenic Escherichia coli (UPEC) strain UTI89 grown in the presence of these compounds shows that the compounds are strongly associated with the bacteria with a heterogeneous distribution.