Aminophosphinidene derivatives

Abstract

Elimination and fragmentation reactions lead to carbene analogous iminophosphanes which undergo 2 + 1 addition as well as insertion reactions. Secondary aminophosphanes and amino substituted three-membered phosphorus rings are phosphinidene transfer reagents and therefore valuable building units for cyclic and acyclic compounds. Synthetic routes to amino substituted diphosphenes and their reaction behaviour are reported.     

Metallophosphaalkenes—from Exotics to Versatile Building Blocks in Preparative Chemistry

The chemistry of low-valent organophosphorus compounds such as phosphaalkenes and phosphaalkynes has undergone rapid development in the last two decades. This development also includes the coordination chemistry of these species, which can act as versatile ligands in metal complexes. Metallophosphaalkenes are compounds in which one or more of the organic substituents on the P?C unit is replaced by a transition metal complex fragment. Metallophosphaalkenes have emerged from an existence as laboratory curiosities to become a link between main group and organometallic complex chemistry. The great richness of their chemistry not only mirrors the specific properties of the individual building block, but also shows novel and individual traits. Particular examples are cycloadditions of these electron-rich heteroalkenes with electron-deficient alkenes, alkynes, azo, and diazo compounds. These often lead to novel types of reaction and compounds. Metallophosphaalkenes are also important as intermediates in all metal-assisted cyclooligomerizations of phosphaalkynes.     

Mining a chemical database for fragment co-occurrence: discovery of "chemical clichés"

Nowadays millions of different compounds are known, their structures stored in electronic databases. Analysis of these data could yield valuable insights into the laws of chemistry and the habits of chemists. We have therefore explored the public database of the National Cancer Institute (>250,000 compounds) by pattern searching. We split the molecules of this database into fragments to find out which fragments exist, how frequent they are, and whether the occurrence of one fragment in a molecule is related to the occurrence of another, nonoverlapping fragment. It turns out that some fragments and combinations of fragments are so frequent that they can be called "chemical clichés". We believe that the fragment data can give insight into the chemical space explored so far by synthesis. The lists of fragments and their (co-)occurrences can help create novel chemical compounds by (i) systematically listing the most popular and therefore most easily used substituents and ring systems for synthesizing new compounds, (ii) being an easily accessible repository for rarer fragments suitable for lead compound optimization, and (iii) pointing out some of the yet unexplored parts of chemical space.     

Chemistry of Metallacyclobutadienes

Metallacyclobutadienes are analogues of cyclobutadienes in which one of the cyclobutadiene CR groups has been formally replaced by a transition‐metal fragment. These metallacycles are interesting because they can play an important role in catalysis and can serve as starting materials for the syntheses of organometallic compounds such as metallabenzene, η⁵‐cyclopentadienyl, and η³‐cyclopropenyl complexes. Unlike cyclobutadienes, metallacyclobutadienes can be significantly more stable. A number of metallacyclobutadienes have now been isolated and thoroughly characterized, especially for those that contain transition metals of groups 5–9. Their properties have also been actively investigated. This article highlights the chemistry of metallacyclobutadienes with reference to their syntheses, reactivity, and structural properties.     

Synthesis of Phosphanes Bearing 2‐Imino‐1,3‐thiazolidine Ligands – X‐Ray Analyses and NMR Spectroscopy

Pseudo‐ephedrine derived 2‐imino‐1,3‐thiazolidine 1 reacts with tris(diethylamino)phosphane by stepwise replacement of the diethylamino group to give the mono‐, bis‐ and tris(imino)phosphanes 2 , 3 and 4 , respectively, of which 4 could be isolated in pure state. The analogous reaction with diethylamino‐diphenylphosphane affords the imino‐diphenylphosphane 5 . The iminophosphanes react with sulfur or selenium to give the corresponding phosphorus(V) compounds. In contrast, the reaction of the iminophosphanes with oxygen is very slow; anhydrous trimethylamine N‐oxide reacts in the melt with the phosphanes to give the oxides 4(O) and 5(O) . The molecular structures of 4(O) (in mixture with 4 ), 4(Se) , 5(S) and 5(Se) were determined by X‐ray analysis. In all cases the ring‐sulfur and the phosphorus atoms are in cis‐positions at the C=N bonds. The analogous solution structures were determined by ¹H, ¹³C, ¹⁵N, ³¹P and ⁷⁷Se NMR spectroscopy. In the case of the compounds 5 , 5(O) , 5(S) and 5(Se) the isotope‐induced chemical shifts ¹δ^14/15N(³¹P) were determined, using INEPT‐HEED experiments.     

Deprotonative metalation using ate compounds: synergy, synthesis, and structure building

Historically, single-metal organometallic species such as organolithium compounds have been the reagents of choice in synthetic organic chemistry for performing deprotonation reactions. Over the past few years, a complementary new class of metalating agents has started to emerge. Owing to a variable central metal (magnesium, zinc, or aluminum), variable ligands (both in their nature and number), and a variable second metallic center (an alkali metal such as lithium or sodium), "ate" complexes are highly versatile bases that exhibit a synergic chemistry which cannot be replicated by the homometallic magnesium, zinc, or aluminum compounds on their own. Deprotonation accomplished by using these organometallic ate complexes has opened up new perspectives in organic chemistry with unprecedented reactivities and sometimes unusual and unpredictable regioselectivities.     

组合化学、分子库与新药研究

组合化学是进入90 年代以来寻找及优化新药先导化合物的主要研究方法, 其特点是改变了传统的逐一合成、逐一纯化、逐一筛选的模式, 而是以合成和筛选化学库的形式完成寻找及优化药物先导化合物, 极大地加快了药物先导化合物出现的速度。本文就目前有关组合化学研究的基本理论、基本方法、发展趋势、研究成果以及我国应当采取的措施进行了综述。     

Toxicity of Chlorinated Organic Compounds: Effects of the Introduction of Chlorine in Organic Molecules

Industrial “chlorine chemistry” is accused of polluting the environment with its products and having adverse effects on health. The accusation has been followed by the demand that this ill-defined branch of chemistry be simply abolished, a demand which has been repeated vigorously now for years. It grew out of misgivings such as those summarized here: 1. A number of polychlorinated cyclic compounds are very stable and highly lipophilic so that they accumulate in the environment and affect mankind through the food chain. Prominent examples are chlorinated pesticides, biphenyls, dibenzodioxins, and dibenzofurans. 2. Many chlorinated compounds are toxic for man and animals. Their genotoxicity (mutagenicity and carcinogenicity) plays a role in risk assessment; more and more chlorinated organic compounds are being shown to be carcinogenic and classified accordingly. To date there are no comprehensive reviews of the toxicology of chlorinated organic compounds. The present treatise is the result of an attempt to analyze the situation systematically. It makes generalizations as to the kind and degree of toxicity of the most important classes of chlorinated organic compounds and elaborates recommendations for reduction and avoidance of risk during production, occupational handling, and general use.     

Coordination complexes incorporating pyrophosphate: Structural overview and exploration of their diverse magnetic,catalytic and biological properties

Current attention continues to revolve around the chemistry and biochemistry associated with polyphosphate anions because of their importance in biology. A pivotal intermediate within this family is the pyrophosphate tetraanion, P₂O₇^4?. Considering its biological relevance and the multidentate nature that makes it an ideal ligand in the field of the coordination chemistry, there is a growing interest in the use of this anion in building new class of molecules/compounds for different purposes. While the total number of characterized structures still remains modest, several new pyrophosphate-containing coordination complexes have been reported in the last decade, as well as different solid-state structures. This review focuses on the structural, magnetic, and biological properties of coordination complexes incorporating the pyrophosphate ligand reported to date.     

Mass spectrometry of hop compounds—II: Mass spectra of related oxygen heterocyclic compounds

Mass spectra have been determined of a number of phloroglucinol derivatives and closely-related compounds encountered in chemical studies of hop components. Initial fission involving acyl, alkyl or alkenyl side-chains gives predominantly even-electron ions which then fragment their oxygen heterocyclic rings by elimination of neutral molecules, whilst gem-dialkenyl centres show preference for loss of an alkenyl group. The fragment ions induced by electron-impact may be correlated to a useful extent with molecular structure.     

Electron‐Deficient Triborane and Tetraborane Ring Compounds: Synthesis,Structure, and Bonding

Electron‐deficient small boron rings are unique in their formation of σ‐ and π‐delocalized electron systems as well as the avoidance of “classical” structures with two‐center‐two‐electron (2c,2e) bonds. These rings are tolerant of several skeletal electron numbers, which makes their redox chemistry highly interesting. In the past few decades, a range of stable compounds have been synthesized with various electron numbers in their B₃ and B₄ cores. The electronic structures were evaluated by quantum‐chemical calculations. On the other hand, the chemistry of these rings is still very much underdeveloped, being generally limited to the protonation and redox reactions of individual systems. The linkage of several B₃ and/or B₄ ring systems should give compounds with attractive electronic properties, thus leading the way to novel boron‐based materials. By summarizing important experimental and theoretical results, this Review intends to provide the basis for the exploration of the chemistry of these rings and, in particular, their integration into larger molecular architectures.     

The multiple roles of computational chemistry in fragment-based drug design

Fragment-based drug discovery (FBDD) represents a change in strategy from the screening of molecules with higher molecular weights and physical properties more akin to fully drug-like compounds, to the screening of smaller, less complex molecules. This is because it has been recognised that fragment hit molecules can be efficiently grown and optimised into leads, particularly after the binding mode to the target protein has been first determined by 3D structural elucidation, e.g. by NMR or X-ray crystallography. Several studies have shown that medicinal chemistry optimisation of an already drug-like hit or lead compound can result in a final compound with too high molecular weight and lipophilicity. The evolution of a lower molecular weight fragment hit therefore represents an attractive alternative approach to optimisation as it allows better control of compound properties. Computational chemistry can play an important role both prior to a fragment screen, in producing a target focussed fragment library, and post-screening in the evolution of a drug-like molecule from a fragment hit, both with and without the available fragment-target co-complex structure. We will review many of the current developments in the area and illustrate with some recent examples from successful FBDD discovery projects that we have conducted.     

Organoaluminum chemistry and its application to the initiation of carbenium ion polymerization

Organoaluminum compounds are weak Lewis acids, which specifically react with a number of reagents (or bases) and generate an electrophile (initiator)gegenion pair, reminiscent of classical Friedel—Crafts complexes. These complexes, under suitable reaction conditions, initiate polymerization of cationically polymerizable monomers producing useful high molecular weight polymers. In recent years a number of such organoaluminum-initiator systems have been systematically explored and their chemistry unravelled. As a consequence new insights have been gained which has led to newer applications of organoaluminum compounds in organic as well as new polymer synthesis.The present paper briefly summarizes the results in this area, especially from the point of view of initiator generation. Some recent results on the initiation of carbenium ion polymerizations using the oxyhalides of sulfur and phosphorous in conjunction with organoaluminum compounds are discussed.     

Fluorinated Isocyanides—More than Ligands with Unusual Properties

The substitution of hydrogen by fluorine in organic compounds usually results in drastic changes in their properties. For isocyanides, for which fluorinated examples have only recently become available in preparative quantities, this substitution leads to a significantly increased reactivity and a tendency to polymerize, which, on one hand, makes their handling more difficult. On the other hand, this high reactivity makes the fluorinated isocyanides useful building blocks for the synthesis of compounds like N-trimethylformamide. Energetically favorable π^* orbitals bestow excellent π-acceptor properties towards low-valent transition metal complexes, especially on the ligand trifluoromethyl isocyanide. The pronounced tendency of this ligand to bridge two metal atoms enables the formation of structural types that are not accessible with other π-acceptor ligands. Thus it was possible to prepare [(Os₃(CO)₁₁(μ₂-CNCF₃)₂] (a) derivative of the hypothetical [Os(CO)₁₃]) which may be considered as a model for an associative mechanism of ligand substitution at carbonyl clusters. In contrast to the well-studied chemistry of trifluoromethyl isocyanide, that of the few other known fluorinated isocyanides is only now receiving attention. In particular the only recently synthesized trifluorovinyl isocyanide promises a rich chemistry as a result of its difunctionality.     

Molecular libraries in liquid phase via UGI-MCR

Standard chemistry prescribes the conversion of one or two compounds into their products. In contrast, Eintopf (one-pot) multicomponent reactions (MCRs) involve at least three different compounds. One-pot MCRs are a useful tool in combinatorial chemistry: From a mixture of educts a large number of products can be simultaneously formed in liquid phase, called a soluble molecular library. The member compounds of such libraries are investigated simultaneously for desired properties, e.g. antibiotic activity. The main constraint is, that the underlying chemistry must not produce unknown side reactions and must lead to a broad spectrum of stable products with high yields. Isocyanide multicomponent chemistry allows the generation of soluble libraries of very different sizes, which are easy to screen for biological or pharmaceutical efficacy using the algorithms presented. Products can easily be enumerated and the kinetics of the isocyanide chemistry is simple to investigate. Combinatorial chemistry is capable of generating and optimizing leads faster and with fewer resources than by conventional means. Combinatorial chemistry based on isocyanide chemistry is by far the most important and most impressive technique in use today to reducing time and costs associated with lead generation and optimization during the drug discovery process. The simplicity of the reaction conditions involved means that the generation and screening of libraries can be automated.     

Fragment-based drug design: computational & experimental state of the art

Fragment-based screening is an emerging technology which is used as an alternative to high-throughput screening (HTS), and often in parallel. Fragment screening focuses on very small compounds. Because of their small size and simplicity, fragments exhibit a low to medium binding affinity (mM to μM) and must therefore be screened at high concentration in order to detect binding events. Since some issues are associated with high-concentration screening in biochemical assays, biophysical methods are generally employed in fragment screening campaigns. Moreover, these techniques are very sensitive and some of them can give precise information about the binding mode of fragments, which facilitates the mandatory hit-to-lead optimization. One of the main advantages of fragment-based screening is that fragment hits generally exhibit a strong binding with respect to their size, and their subsequent optimization should lead to compounds with better pharmacokinetic properties compared to molecules evolved from HTS hits. In other words, fragments are interesting starting points for drug discovery projects. Besides, the chemical space of low-complexity compounds is very limited in comparison to that of drug-like molecules, and thus easier to explore with a screening library of limited size. Furthermore, the "combinatorial explosion" effect ensures that the resulting combinations of interlinked binding fragments may cover a significant part of "drug-like" chemical space. In parallel to experimental screening, virtual screening techniques, dedicated to fragments or wider compounds, are gaining momentum in order to further reduce the number of compounds to test. This article is a review of the latest news in both experimental and in silico virtual screening in the fragment-based discovery field. Given the specificity of this journal, special attention will be given to fragment library design.     

Peptidomimetics—Tailored Enzyme Inhibitors

Peptides and proteins (there is no clear boundary between the two classes of compounds) are absolutely essential components of organisms in many ways. While proteins have biocatalytic functions and are important components of tissues, peptides play an important role in the organism as hormones, neurotransmitters, and neuromodulators. Peptides and their analogues have long been used in medicinal chemistry as therapeutic agents for pathological conditions generally characterized by a disruption of the interplay between messenger molecules or enzyme substrates and their targets, the receptors and enzymes. For various biochemical and biophysical reasons there is an increasing tendency towards the use of chemical “Trojan horses” known as peptidomimetics. The chances that such agents are active generally increase with the magnitude of the “deceptive effect”, in other words in proportion to the degree of conversion of a peptide into a non-peptide. Rational design has become a catchphrase which is at present applied frequently to the development of peptidomimetics. New computer programs are invaluable tools in such design processes. However, in spite of the many advances already made, we are still far from the final goal, the de novo design of peptidomimetics. Rational design is nonetheless advancing rapidly, and it is already clear that developments in the area of peptidomimetics have given a great boost to peptide chemistry as a whole. This can be expected to continue, so that in future peptide chemistry may be characterized by a type of symbiotic alliance between peptides and non-peptides.     

Application of neutral amidines and guanidines in coordination chemistry

The aim of this perspective is to highlight the continued development and application of amidines and guanidines as neutral, N-based donor ligands in coordination chemistry. From a sporadic interest dating back to the 1980s, work on these two closely related classes of compounds has steadily grown, with examples of evermore sophisticated substitution about the common ligand framework being developed to address specific problems in a number of fields of chemistry. These compounds have shown varied coordination modes at metals from across the periodic table, and examples of their application in a number of catalytic processes are emerging as the field matures.     

Synthesis of 3(5)-Amino-4-acylamino-5(3)-arylsulfanylpyrazoles and Their Fused Derivatives on the Basis of <Emphasis Type="Italic">N</Emphasis>-(2,2,2-Trichloro-1-hydroxyethyl)benzamides

Addition products of carboxylic acid amides and trichloroacetaldehyde are readily converted into 3-arylsulfanyl-2-acylamino-3-chloroacrylonitriles which react with hydrazine hydrate to afford 3(5)-amino-5(3)-arylsulfanyl-4-acylaminopyrazoles. The presence of an amidine fragment in the latter makes them capable of undergoing cyclocondensations with β-dicarbonyl compounds and ethyl cyanoacetate.     

Synthesis,Structure and Reactivity of PH‐Phosphoraneiminato‐ and Iminophosphoraneiminato Group 4 Transition‐Metal Complexes

The versatile coordination chemistry of the well‐investigated phosphoraneiminato‐ligand R₃PN^— ( I ) was extended by the successive introduction of protons to the phosphorus atom. The position of the resulting equilibrium between the NH‐phosphanylamido‐ [R₂P‐NH^—] and the PH‐phosphoraneiminato‐form [R₂HP=N^—] is affected by the Lewis acidity of the coordinated metal fragment. Experimental studies on complexes with various substitution patterns at the group 4 metal center R₂HP=N[M] ( II ) were unambiguously confirmed by DFT‐calculations. The isolation of group 4 PH‐dihydrido‐phosphoraneiminato‐complexes RH₂P‐N[M] ( III ) is prevented by the low thermodynamic stability of the target molecules, also supported by the results of ab initio calculations. However, an access to the by then unknown transition‐metal substituted iminophosphanes RP=N[M] ( IV ) was verified for the first time. Within extensive studies on the coordination chemistry of bis(imino)phosphoranes RP(=NR′)(=NR″), several species of group 4 complexes R(R′N=)P=N[M] ( V ) were isolated and structurally characterized. In this case, investigations on the NH/PH‐tautomerism were performed exclusively on theoretical level, because the required educts are experimentally non‐accessible due to their kinetic instability.