Nucleophilic Substitution at Phosphorus Centers (SN2@P)

We have studied the characteristics of archetypal model systems for bimolecular nucleophilic substitution at phosphorus (S_N2@P) and, for comparison, at carbon (S_N2@C) and silicon (S_N2@Si) centers. In our studies, we applied the generalized gradient approximation (GGA) of density functional theory (DFT) at the OLYP/TZ2P level. Our model systems cover nucleophilic substitution at carbon in X^?+CH₃Y (S_N2@C), at silicon in X^?+SiH₃Y (S_N2@Si), at tricoordinate phosphorus in X^?+PH₂Y (S_N2@P3), and at tetracoordinate phosphorus in X^?+POH₂Y (S_N2@P4). The main feature of going from S_N2@C to S_N2@P is the loss of the characteristic double‐well potential energy surface (PES) involving a transition state [X? CH₃? Y]^? and the occurrence of a single‐well PES with a stable transition complex, namely, [X? PH₂? Y]^? or [X? POH₂? Y]^?. The differences between S_N2@P3 and S_N2@P4 are relatively small. We explored both the symmetric and asymmetric (i.e. X, Y=Cl, OH) S_N2 reactions in our model systems, the competition between backside and frontside pathways, and the dependence of the reactions on the conformation of the reactants. Furthermore, we studied the effect, on the symmetric and asymmetric S_N2@P3 and S_N2@P4 reactions, of replacing hydrogen substituents at the phosphorus centers by chlorine and fluorine in the model systems X^?+PR₂Y and X^?+POR₂Y, with R=Cl, F. An interesting phenomenon is the occurrence of a triple‐well PES not only in the symmetric, but also in the asymmetric S_N2@P4 reactions of X^?+POCl₂? Y.     

Nucleophilic substitution at phosphorus: stereochemistry and mechanisms

This review is devoted to the stereochemistry of nucleophilic substitution reactions at phosphorus. The study of the reactions of phosphoryl group transfer is important for biological and molecular chemistry. The stereochemistry and mechanisms of S_N1(P) monomolecular and S_N2(P) bimolecular nucleophilic substitution reactions of organophosphorus compounds are discussed. It has been shown that hydrolysis of many natural phosphates proceeds according to the monomolecular S_N1(P) mechanism via the formation of metaphosphate intermediate (PO₃^?). S_N2(P) nucleophilic substitution at chiral trivalent or pentavalent phosphorus compounds proceeds via the formation of penta-coordinated transition state or pentacoordinate intermediate.     

Theoretical investigation of photoelectron spectra and magnetically induced current densities in ring-shaped transition-metal oxides

The molecular structures of cyclic group 6 transition-metal (M = Cr, Mo, W, Sg) oxides (M ₃O ₉ ^0/1?/2? ) species have been optimized at density functional theory (DFT) levels. The photoelectron spectra (PES) of M ₃O ₉ ^? (M = Cr, Mo, W) were calculated at the time-dependent DFT and approximate coupled-cluster singles doubles (CC2) levels and compared with experimental results. The CC2 calculations did not yield any reliable PES, whereas the molecular structures can be identified by comparing PES obtained at the DFT level with experiment. Magnetically induced current densities were calculated at the DFT level using the gauge-including magnetically induced current (gimic) approach. The current strengths and current pathways of the neutral M₃O₉ and the dianionic M₃O ₉ ^2? (M = Cr, Mo) oxides were investigated and analyzed with respect to a previous prediction of d-orbital aromaticity for Mo₃O₉ anions. Current-density calculations provide ring-current strengths that are used to assess the degree of aromaticity. Comparison of current-density calculations and calculations of nucleus-independent chemical shifts (NICS) shows that NICS calculations are not a reliable tool for determining the degree of aromaticity of the metal oxides.     

Reaction of oxophosphoranesulphenyl chlorides with phosphorus trichloride : A new synthesis of dialkyl phosphorochloridothionates and their optically active analogues

The reaction of acyclic oxophosphoranesulphenyl chlorides, with phosphorus trichloride has been found to give thiophosphoryl chlorides, and phosphoryl oxychloride—the products of the exclusive deoxygenation of sulphenyl chloride. Optically active phosphonochloridothionates and phosphorochloridothionates in a high state of optical purity have been obtained with inversion of configuration from optically active sulphenyl chlorides and phosphorus trichloride. It has been shown, however, that cyclic oxophosphoranesulphenyl chlorides undergo simultaneous desulphurisation and deoxygenation when treated with phosphorus trichloride. Using cis- and trans-isomers of 2-chlorothio-4-methyl-1,3,2-dioxaphosphorinan-2-one it has been demonstrated that deoxygenation is accompanied by inversion, whereas desulphurisation occurs with retention at phosphorus. The mechanism of the title reaction is discussed.     

Mechanisms and kinetics of the ozonolysis reaction of cis-3-hexenyl acetate and trans-2-hexenyl acetate in atmosphere: a theoretical study

Gas-phase reaction mechanisms of ozone with cis/trans-3-hexenyl acetate and cis/trans-2-hexenyl acetate are performed using density functional theory. The reactions are initiated by the formation of the primary ozonides which are followed by the reactions of biradicals with H₂O or NO. The formation of the secondary ozonide (SOZ) is also studied. On the basis of the above DFT calculations, the modified multichannel RRKM theory is used to evaluate the rate constants. At 298 K and 101 kPa, the calculated total rate constants are 9.84 × 10^?17, 1.39 × 10^?17, 2.50 × 10^?17, and 7.37 × 10^?17 cm³ mol^?1 s^?1 for cis-3-hexenyl acetate, trans-2-hexenyl acetate, cis-2-hexenyl acetate, and trans-3-hexenyl acetate, respectively. Our results are in good agreement with experimental values. The total rate coefficients are almost pressure-independent in the range of 0.01–10,000 Torr, but show temperature dependence over the whole study range (200–2,000 K). In addition, branching ratios of the favorable reaction channels are obtained.     

Static Influence of Ligands: Comparison of DFT Calculations with Experimental Data

The possibility of reproducing regularities of static mutual influence of ligands in complexes of Period V and VI elements of the Periodic Table (Pd, Sn, Sb, Pt, Pb) using the density functional theory (DFT) calculations is studied. Relativistic effects are taken into account by means of the Dirac equation approximation (zero-order regular approximation, ZORA). The calculations reproduced trans-influence in Pt complexes and trans-shortening and cis-elongation in the nontransition metal complexes. At the same time, Pb chloride complexes and Sn iodide complexes exhibit substantial differences between experimental and calculation bond lengths. When solvation was accounted for by COSMO method, DFT calculations reproduce the relative stability of the cis- and trans-Pt(NH₃)₂X₂ complexes (X is halogen) and of the sulfur-containing Ni and Pd chelate complexes. The calculated geometry of the cis-Pt(NH₃)₂X₂ molecule noticeably differs from the experimental geometry due to the overestimated strength of intramolecular N-H···X hydrogen bonds.     

Halogenative kinetic resolution of β-aryloxy cyclic alcohols: chiral BINAP-mediated SN2 displacement of hydroxy groups by chlorides with inversion of stereochemistry

A series of optically active cyclic trans-β-aryloxy alcohols have been obtained by non-enzymatic kinetic resolution of the corresponding racemic aryloxy cyclic alcohols using commercially available (S)-BINAP and NCS by S_N2 halogenation of a hydroxy group. The product, cis-β-aryloxy chlorides, was also obtained in optically active form with inversion of the stereochemistry.     

Theoretical Study of Nucleophilic Identity Substitution Reactions at Nitrogen,Silicon and Phosphorus versus Carbon: Reaction Pathways,Energy Barrier,Inversion and Retention Mechanisms

Gas‐phase identity S_N2(N), S_N2(Si) and S_N2(P) versus S_N2(C) reactions with Cl^? are investigated by the ab initio method. Front‐side attack identity S_N2 reactions considered have all double‐well potential energy surfaces (PES), and back‐side attack identity S_N2(C) and S_N2(N) reactions have also double‐well PES, while back‐side attack identity S_N2(Si) and S_N2(P) have single‐well PES. In addition, the geometrical transformations, potential energy profiles of front‐side and back‐side attack identity S_N2(N), S_N2(Si) and S_N2(P) versus S_N2(C) reactions based on the IRC calculations are described, the differences between them for the front‐side or back‐side attack reactions have been demonstrated.     

Copper(II)-Mediated Iodination of 1-Nitroso-2-naphthol

The 3-Iodo-1-nitrosonaphthalene-2-ol (I-NON) was obtained by the copper(II)-mediated iodination of 1-nitroso-2-naphthol (NON). The suitable reactants and optimized reaction conditions, providing 94% NMR yield of I-NON, included the usage of Cu(OAc)₂·H₂O and 1:2:8 Cu^II/NON/I₂ molar ratio between the reactants. The obtained I-NON was characterized by elemental analyses (C, H, N), high-resolution ESI⁺-MS, ¹H and ¹³C{¹H} NMR, FTIR, UV-vis spectroscopy, TGA, and X-ray crystallography (XRD). The copper(II) complexes bearing deprotonated I-NON were prepared as follows: cis-[Cu(I-NON–H)(I-NON)](I₃) (1) was obtained by the reaction between Cu(NON-H)₂ and I₂ in CHCl₃/MeOH, while trans-[Cu(I-NON–H)₂] (2) was synthesized from I-NON and Cu(OAc)₂ in MeOH. Crystals of trans-[Cu(I-NON–H)₂(THF)₂] (3) and trans-[Cu(I-NON–H)₂(Py)₂] (4) were precipitated from solutions of 2 in CHCl₃/THF and Py/CHCl₃/MeOH mixtures, respectively. The structures of 1 and 3–4 were additionally verified by X-ray crystallography. The characteristic feature of the structures of 1 and 3 is the presence of intermolecular halogen bonds with the involvement of the iodine center of the metal-bound deprotonated I-NON. The nature of the I···I and I···O contacts in the structures of 1 and 3, correspondingly, were studied theoretically at the DFT (PBE0-D3BJ) level using the QTAIM, ESP, ELF, NBO, and IGM methods.     

Dinuclear Ru–Aqua Complexes for Selective Epoxidation Catalysis Based on Supramolecular Substrate Orientation Effects

Ru–aqua complex {[Ru^II(trpy)(H₂O)]₂(μ‐pyr‐dc)}⁺ is a powerful epoxidation catalyst for a wide range of linear and cyclic alkenes. High turnover numbers (TNs), up to 17000, and turnover frequencies (TOF), up to 24120 h^?1 (6.7 s^?1), have been obtained using PhIO as oxidant. This species presents an outstanding stereospecificity for both cis and trans olefins towards the formation of their corresponding cis and trans epoxides. In addition, it shows different reactivity to cis and trans olefins due to a substrate orientation supramolecular effect transmitted by its ligand scaffold. This effect together with the impressive reaction rates are rationalized using electrochemical techniques and DFT calculations.     

Stereochemistry of organophosphorus cyclic compounds—II : Stereospecific synthesis of cis- and trans 2-halogeno-2-oxo-4-methyl-1,3,2-dioxaphosphorinans and their chemical transformations

cis- and trans-2-Chloro-2-oxo-4-methyl-1,3,2-dioxaphosphorinans have been obtained by stereospecific reactions of diastereomerically pure 2-methoxy-4-methyl-1,3,2-dioxaphosphorinans or 2-hydrogen-2-oxo-4-methyl-1,3,2-dioxaphosphorinans with chlorine and sulphuryl chloride, respectively. Similarly, the action of the corresponding brominating agents on isomeric phosphites and phosphonates afforded pure cis- and trans-2-bromo-2-oxo-4-methyl-1,3,2-dioxaphosphorinans. It has been shown that halogenolysis proceeds with retention of configuration at the P atom. On the basis of the ¹H- and ³¹P-NMR spectra conformation of the halogenoanhydrides obtained has been discussed briefly.It has been also found that model nucleophilic substitution reactions occur with inversion of configuration at the P atom in the cyclic halogenoanhydrides.     

Synthesis and structure characterization of ladder-like polymethylsilsesquioxane (PMSQ) by isolation of stereoisomer

The stereo cyclic siloxane compounds having tetra hydroxyl and tetra methyl group were synthesized by hydrolysis of tetrahydrido tetramethyl cyclosiloxane consisting of four stereoisomers. Among the stereo cyclic isomers, cis-trans-cis tetrahydroxyl tetramethyl cyclosiloxane (2) was separated by recrystallization and was used as a monomer species for preparation of ladder-like polymethylsilsesquioxane (PMSQ). The isolated isomer was directly polymerized in THF with potassium carbonate (K₂CO₃) by systematic ring condensation. The hydrolyzed stereoisomers were characterized by ¹H and ²⁹Si NMR, and HPLC. The structure of the synthesized PMSQs were characterized by size exclusion chromatography (SEC), MALDI-TOF mass, ²⁹Si NMR, and small angle X-ray scattering (SAXS).     

Rational Construction of a Responsive Azo-Functionalized Porous Organic Framework for CO2 Sorption

An azo-functionalized porous organic framework (denoted as JJU-1) was synthesized via FeCl₃-promoted oxidative coupling polymerization. By virtue of a porous skeleton and a light/heat responsive azo functional group, this task-specific JJU-1 displays a reversible stimuli-responsive adsorption property triggered by UV irradiation and heat treatment. The initial Brunauer–Emmet–Teller (BET) surface area of this porous material is 467 m² g^–1. The CO₂ sorption isotherms exhibit a slight decrease after UV irradiation because of the trans to cis conversion of the azo functional skeleton. It is worth mentioning that the responsive CO₂ adsorption performance can be recycled for three cycles via alternating external stimuli, confirming the excellently reversible switchability of trans-to-cis isomerization and controllable CO₂ adsorption.     

Addition of lithium ethyl fluoroacetate to cis and trans α,β-epoxyaldehydes. Access to C2 fluorinated butyrolactones

The aldolisation reaction of lithium ethyl fluoroacetate with cis and trans α,β-epoxyaldehydes in their racemic forms proceeds with good C₃-OH diastereoselectivity and much less at the C₂-F carbon atom. A two-step reaction on the major aldol compounds (iodination, lactonisation) led to racemic functionalised C₂ fluorinated lactones, possessing a C₂/C₃cis relationship between the fluorine and hydroxyl groups.     

Kinetics and mechanisms of the reactions of thiosulphato-amine complexes of cobalt(III). Part I. Isomerization and base hydrolysis ofcis andtrans isomers of dithiosulphatobis(ethylenediamine) cobalt(III) ion in aqueous solution

Summary Investigations were carried out on the isomerization and base hydrolysis ofcis andtrans forms of dithiosulphatobis-(ethylenediamine)cobalt(III) ions. Thecis form isomerizes to thetrans form in neutral aqueous medium, rates being 1.15, 2.30 and 4.0×10^–5s^–1, respectively at 42, 50 and 58 °C. Thetrans complex isomerizes to thecis form in basic solution only, the rate varying with pH in a sigmoid pattern. In presence of OH^–, an acid-base equilibrium of the complex ion sets in, but only the basic form takes part in the isomerization reaction. Hydrolysis of thecis isomer proceeds through a base-dependent path only, but that of thetrans isomer proceeds both through base-dependent and base-independent paths. The mechanisms are associative in nature. Thetrans form reacts faster thancis in all cases.     

Novel oxorhenium complexes with 2-(2′-hydroxyphenyl)-2-benzothiazolinato ligand: X-ray studies,spectroscopic characterization and DFT calculations

The [ReOX₂(hbt)(EPh₃)] (X = Cl, Br; E = As, P) chelates have been prepared in the reactions of [ReOX₃(EPh₃)₂] complexes (X = Cl, Br; E = P, As) with 2-(2′-hydroxyphenyl)-2-benzothiazole (hbtH) in acetone. From the reactions of [ReOX₃(PPh₃)₂] with hbtH two kind of crystals [ReOX₂(hbt)(PPh₃)] · MeCN and [ReOX₂(hbt)(PPh₃)] with different arrangement of halide ions (cis and trans) were isolated, whereas the [ReOX₃(AsPh₃)₂] oxocompounds react with hbtH to give only cis-halide isomers. The complexes were structurally and spectroscopically characterised. The electronic structures of both [ReOBr₂(hbt)(PPh₃)] isomers have been calculated with the density functional theory (DFT) method. The TDDFT/PCM calculations have been employed to produce a hundred of singlet excited-states starting from the ground-state geometry optimized in the gas phase of cis- and trans-halide isomers of [ReOBr₂(hbt)(PPh₃)] and the UV–Vis spectra of these complexes have been discussed on this basis.     

The preparation and characterisation of chromium(III) complexes of C-meso-5, 12-dimethyl-1, 4, 8, 11-tetraazacyclotetradecane (LM). Aquation and base hydrolysis kinetics ofcis- andtrans-[CrLMCl2]+

Summary The reaction of [CrCl₃(DMF)₃] with C-meso-5, 12-dimethyl-1, 4, 8, 11-tetra-azacyclotetradecane(L_M) in DMF gives a mixture ofcis-[CrL_MCl₂]Cl (ca. 90%) andtrans-[CrL_MCl₂]Cl (ca. 10%). These complexes are readily separated, as thecis-isomer is insoluble in warm methanol while thetrans-isomer is soluble. Using the dichlorocomplexes as precursors it has been possible to prepare a range ofcis-[CrL_MX₂]⁺ complexes (X=Br^–, NO ₃ ^– , N ₃ ^– , NCS^– and X₂=bidentate oxalate) and alsotrans-[CrL_MX₂]⁺ complexes (X=Br^–, H₂O or NCS^–). The spectroscopic properties and detailed stereochemistry of the complexes are discussed.The aquation and base hydrolysis kinetics ofcis- andtrans-[CrL_MCl₂]⁺ have been studied at 25° C. Base hydrolysis of thecis-complex is extremely rapid with K_OH =1.46×10⁵ dm³ mol^–1 at 25° C. This unusual reactivity appears to be associated with thetrans II stereochemistry of thesec-NH centres of the macrocycle. Base hydrolysis of thetrans complex with thetrans III chiral nitrogen stereochemistry is quite normal with k_OH =1.1 dm³ mol^–1 s^–1 at 25° C.     

Stereochemistry of alkyl 3-substituted 4-halotetrahydro-2-oxo-3-furancarboxylates: 2—1H and 13C NMR spectra

The ¹H NMR parameters of methyl 3-substituted cis-4-halotetrahydro-2-oxo-3-furancarboxylates are reported, with assignments of the ring protons based on solvent-induced changes in the vicinal trans coupling constants, ³J(H-4, H-5). Preferred conformations, ce with a pseudo-equatorial halogen for the cis isomers and ta with a pseudo-axial halogen for the trans isomers, have been suggested on comparison of the magnitudes of J(trans) and J(gem) in both series. The ³J(¹³CH₃, H-4) values measured for methyl cis-4-bromotetrahydro-3-methyl-3-furancarboxylate, methyl trans-4-bromotetrahydro-3-methyl-3-furancarboxylate and trans-3,4-dibromodihydro-3-methyl-2(3H)-furanone have confirmed the stereochemical assignments.     

Influence of Central Metalloligand Geometry on Electronic Communication between Metals: Syntheses,Crystal Structures,MMCT Properties of Isomeric Cyanido‐Bridged Fe2Ru Complexes,and TDDFT Calculations

To investigate how the central metalloligand geometry influences distant or vicinal metal‐to‐metal charge‐transfer (MMCT) properties of polynuclear complexes, cis‐ and trans‐isomeric heterotrimetallic complexes, and their one‐ and two‐electron oxidation products, cis/trans‐ [Cp(dppe)Fe^IINCRu^II(phen)₂CN‐Fe^II(dppe)Cp][PF₆]₂ (cis/trans‐ 1 [PF₆]₂), cis/trans‐[Cp(dppe)Fe^IINCRu^II(phen)₂CNFe^III‐(dppe)Cp][PF₆]₃ (cis/trans‐ 1 [PF₆]₃) and cis/trans‐[Cp(dppe)Fe^IIINCRu^II(phen)₂CN‐Fe^III(dppe)Cp][PF₆]₄ (cis/trans‐ 1 [PF₆]₄) have been synthesized and characterized. Electrochemical measurements show the presence of electronic interactions between the two external Fe^II atoms of the cis‐ and trans‐isomeric complexes cis/trans‐ 1 [PF₆]₂. The electronic properties of all these complexes were studied and compared by spectroscopic techniques and TDDFT//DFT calculations. As expected, both mixed valence complexes cis/trans‐ 1 [PF₆]₃ exhibited different strong absorption signals in the NIR region, which should mainly be attributed to a transition from an MO that is delocalized over the Ru^II‐CN‐Fe^II subunit to a Fe^III d orbital with some contributions from the co‐ligands. Moreover, the NIR transition energy in trans‐ 1 [PF₆]₃ is lower than that in cis‐ 1 [PF₆]₃, which is related to the symmetry of their molecular orbitals on the basis of the molecular orbital analysis. Also, the electronic spectra of the two‐electron oxidized complexes show that trans‐ 1 [PF₆]₄ possesses lower vicinal Ru^II→Fe^III MMCT transition energy than cis‐ 1 [PF₆]₄. Moreover, the assignment of MMCT transition of the oxidized products and the differences of the electronic properties between the cis and trans complexes can be well rationalized using TDDFT//DFT calculations.     

Ab initio MO and TST calculations for the rate constant of the HNO+NO2→HONO+NO reaction

Potential-energy surfaces for various channels of the HNO+NO₂ reaction have been studied at the G2M(RCC,MP2) level. The calculations show that direct hydrogen abstraction leading to the NO+cis-HONO products should be the most significant reaction mechanism. Based on TST calculations of the rate constant, this channel is predicted to have an activation energy of 6–7 kcal/mol and an A factor of ca. 10⁻¹¹ cm³ molecule⁻¹ s⁻¹ at ambient temperature. Direct H-abstraction giving NO+trans-HONO has a high barrier on PES and the formation of trans-HONO would rather occur by the addition/1,3-H shift mechanism via the HN(O)NO₂ intermediate or by the secondary isomerization of cis-HONO. The formation of NO+HNO₂ can take place by direct hydrogen transfer with the barrier of ca. 3 kcal/mol higher than that for the NO+cis-HONO channel. The formation of HNO₂ by oxygen abstraction is predicted to be the least significant reaction channel. The rate constant calculated in the temperature range 300–5000 K for the lowest energy path producing NO+cis-HONO gave rise to © 1998 John Wiley & Sons, Inc. Int J Chem Kinet 30: 729–736, 1998