Catalytic and Atom‐Economic C −C Bond Formation: Alkyl Tantalum Ureates for Hydroaminoalkylation

Atom‐economic and regioselective C ?C bond formation has been achieved by rapid C?H alkylation of unprotected secondary arylamines with unactivated alkenes. The combination of Ta(CH₂SiMe₃)₃Cl₂, and a ureate N,O‐chelating‐ligand salt gives catalytic systems prepared in situ that can realize high yields of β‐alkylated aniline derivatives from either terminal or internal alkene substrates. These new catalyst systems realize C?H alkylation in as little as one hour and for the first time a 1:1 stoichiometry of alkene and amine substrates results in high yielding syntheses of isolated amine products by simple filtration and concentration.     

Rapid Room‐Temperature,Chemoselective C −C Coupling of Poly(pseudo)halogenated Arenes Enabled by Palladium(I) Catalysis in Air

While chemoselectivities in Pd⁰‐catalyzed coupling reactions are frequently non‐intuitive and a result of a complex interplay of ligand/catalyst, substrate, and reaction conditions, we herein report a general method based on Pd^I that allows for an a priori predictable chemoselective C −C coupling at C−Br in preference to C−OTf and C−Cl bonds, regardless of the electronic or steric bias of the substrate. The C−C bond formations are extremely rapid (<5 min at RT) and are catalyzed by an air‐ and moisture‐stable Pd^I dimer under open‐flask conditions.     

Kinetics of the Antibody Recognition Site in the Third IgG‐Binding Domain of Protein G

Protein dynamics occurring on a wide range of timescales play a crucial role in governing protein function. Particularly, motions between the globular rotational correlation time ( ) and 40 μs (supra‐ window), strongly influence molecular recognition. This supra‐ window was previously hidden, owing to a lack of experimental methods. Recently, we have developed a high‐power relaxation dispersion (RD) experiment for measuring kinetics as fast as 4 μs. For the first time, this method, performed under super‐cooled conditions, enabled us to detect a global motion in the first β‐turn of the third IgG‐binding domain of protein G (GB3), which was extrapolated to 371±115 ns at 310 K. Furthermore, the same residues show the plasticity in the model‐free residual dipolar coupling (RDC) order parameters and in an ensemble encoding the supra‐ dynamics. This β‐turn is involved in antibody binding, exhibiting the potential link of the observed supra‐ motion with molecular recognition.     

Optimized Target Residence Time: Type I Inhibitors for p38α MAP Kinase with Improved Binding Kinetics through Direct Interaction with the R‐Spine

Skepinone‐L was recently reported to be a p38α MAP kinase inhibitor with high potency and excellent selectivity in vitro and in vivo. However, this class of compounds still act as fully ATP‐competitive Type I binders which, furthermore, suffer from short residence times at the enzyme. We herein describe a further development with the first Type I binders for p38α MAP kinase. Type I inhibitors interfere with the R‐spine, inducing a glycine flip and occupying both hydrophobic regions I and II. This design approach leads to prolonged target residence time, binding to both the active and inactive states of the kinase, excellent selectivity, excellent potency on the enzyme level, and low nanomolar activity in a human whole blood assay. This promising binding mode is proven by X‐ray crystallography.     

Spin–orbit effects on magnetically induced current densities in the () clusters

This study reports the spin–orbit effects on the aromaticity of the , , , , , and anionic clusters via the magnetically induced current‐density method. All‐electron density functional theory (DFT) calculations were carried out using the four‐component Dirac‐Coulomb (DC) hamiltonian, including scalar and spin–orbit relativistic effects. The magnetic index of aromaticity was calculated by numerical integration over the current flow between two atoms in the pentagonal ring. These values were compared to the spin‐free values (spin–orbit coupling switched off), in order to assess the spin–orbit effect on aromaticity. It was found that in the heavy anions, and , there is a significant influence of the spin–orbit coupling. © 2018 Wiley Periodicals, Inc.     

In Situ Generated Gold Nanoparticles on Active Carbon as Reusable Highly Efficient Catalysts for a C −C Stille Coupling

Gold nanoparticle catalysts are important in many industrial production processes. Nevertheless, for traditional C ?C cross‐coupling reactions they have been rarely used and Pd catalysts usually give a superior performance. Herein we report that in situ formed gold metal nanoparticles are highly active catalysts for the cross coupling of allylstannanes and activated alkylbromides to form C ?C bonds. Turnover numbers up to 29 000 could be achieved in the presence of active carbon as solid support, which allowed for convenient catalyst recovery and reuse. The present study is a rare case where a gold metal catalyst is superior to Pd catalysts in a cross‐coupling reaction of an organic halide and an organometallic reagent.     

Deriving Structural Information from Experimentally Measured Data on Biomolecules

During the past half century, the number and accuracy of experimental techniques that can deliver values of observables for biomolecular systems have been steadily increasing. The conversion of a measured value Q^exp of an observable quantity Q into structural information is, however, a task beset with theoretical and practical problems: 1) insufficient or inaccurate values of Q^exp, 2) inaccuracies in the function used to relate the quantity Q to structure , 3) how to account for the averaging inherent in the measurement of Q^exp, 4) how to handle the possible multiple‐valuedness of the inverse of the function , to mention a few. These apply to a variety of observable quantities Q and measurement techniques such as X‐ray and neutron diffraction, small‐angle and wide‐angle X‐ray scattering, free‐electron laser imaging, cryo‐electron microscopy, nuclear magnetic resonance, electron paramagnetic resonance, infrared and Raman spectroscopy, circular dichroism, Förster resonance energy transfer, atomic force microscopy and ion‐mobility mass spectrometry. The process of deriving structural information from measured data is reviewed with an eye to non‐experts and newcomers in the field using examples from the literature of the effect of the various choices and approximations involved in the process. A list of choices to be avoided is provided.     

The Trifluoromethyl Anion: Evidence for [K(crypt‐222)]+

[K(crypt‐222)]⁺ ( 1 ) and [K(crypt‐222)]⁺ ( 3 ) are isostructural, displaying nearly identical unit cell parameters. The two structures are similar to the extent that the previously reported [K(crypt‐222)]⁺ model can be refined against the new data for [K(crypt‐222)]⁺ , with extra electron density being observed from the fourth fluorine atom of the . In agreement with experimental observations, theoretical calculations suggest that deprotonated [K(crypt‐222)]⁺ is highly unstable even at as low as 195 K. The previously considered 1:1 CHF ₃ clathrate of deprotonated [K(crypt‐222)]⁺ (crystallographically indistinguishable from 1 ) is ruled out on the basis of all available data.     

Head–Tail Asymmetry as the Determining Factor in the Formation of Polymer Cubosomes or Hexasomes in a Rod–Coil Amphiphilic Block Copolymer

The self‐assembly of a rod–coil amphiphilic block copolymer (ABCP) led to Im m and Pn m polymer cubosomes and p6mm polymer hexasomes. This is the first time that these structures are observed in a rod–coil system. By varying the hydrophobic chain length, the initial concentration of the polymer solution, or the solubility parameter of the mixed solvent, head–tail asymmetry is adjusted to control the formation of polymer cubosomes or hexasomes. The formation mechanism of the polymer cubosomes was also studied. This research opens up a new way for further study of the bicontinuous and inverse phases in different ABCP systems.     

Ritz variational method for the high‐lying nonautoionizing doubly excited 1,3Fe states of two‐electron atoms

Energy eigenvalues of nonautoionizing doubly excited states originating from 2pnf ( ) configuration of two‐electron atoms have been calculated by expanding the basis set in explicitly correlated Hylleraas coordinates under the framework of Ritz variational method. A detailed discussion on the evaluation of correlated basis integrals is given. The energy eigenvalues of a number of these doubly excited states are being reported for the first time especially for the high lying states. The effective quantum numbers ( ) for the states mentioned above have been calculated by using the theory of quantum defect.     

Alkynylation of C (O)–H Bonds Enabled by Photoredox‐Mediated Hydrogen‐Atom Transfer

The development of new hydrogen‐atom transfer (HAT) strategies within the framework of photoredox catalysis is highly appealing for its power to activate a desired C−H bond in the substrate leading to its selective functionalization. Reported here is the first photoredox‐mediated hydrogen‐atom transfer method for the efficient synthesis of ynones, ynamides, and ynoates with high regio‐ and chemoselectivity by direct functionalization of C (O)−H bonds. The broad synthetic application of this method has been demonstrated by the selective functionalization of C(O)−H bonds within complex molecular scaffolds.     

Theoretical prediction of the optical rotation of chiral molecules in ordered media: A computational study of (Ra)‐1,3‐dimethylallene, (2R)‐2‐methyloxirane,and (2R)‐N‐methyloxaziridine

A theoretical procedure has been developed and implemented to calculate the optical rotation of chiral molecules in ordered phase via origin‐independent diagonal components , of the optical activity tensor and origin‐independent components , for , of the mixed electric dipole‐electric quadrupole polarizability. Origin independence was achieved by referring these tensors to the principal axis system of the electric dipole dynamic polarizability at the same laser frequency ω. The approach has been applied, allowing for alternative quantum mechanical methods based on different gauges, to estimate near Hartree–Fock values for three chiral molecules, (2R)‐N‐methyloxaziridine C₂NOH₅, (2R)‐2‐methyloxirane (also referred to as propylene oxide) C₃OH₆, and ( )‐1,3‐dimethylallene C₅H₈, at two frequencies. The theoretical predictions can be useful for an attempt at measuring correspondent experimental values in crystal phase. © 2015 Wiley Periodicals, Inc.     

General build up of basis and matrix in the diagonalization approach. Determination of Kramers configuration state functions

Algorithms to build the basis and matrix representation to obtain the Kramers configuration space functions (KCSFs) via diagonalization will be formally generalized to an arbitrary number of unpaired (open shell) fermions. Effective build up of the matrix representation will be outlined (including threading and graphical processing unit parallelism) to subsequently obtain the KCSFs via calling external/numerical library routines for diagonalization. The effective build up of the matrix representation relays on a binary tree search algorithm to allow evaluation the action on a given basis vector. The binary tree search avoids the treatment of zero matrix elements which leads to an exponential acceleration. The implementation ( basis creation, matrix representation, and matrix diagonalization) will be done in an all in core and all at once manner, hence the available core memory sets the physical limits in practical applications. Memory limitations, sparsity of the matrix, general case of n fermions in m spinors, and the application of KCSFs will be put into further perspective.     

Water Formation under Silica Thin Films: Real‐Time Observation of a Chemical Reaction in a Physically Confined Space

Using low‐energy electron microscopy and local photoelectron spectroscopy, water formation from adsorbed O and H₂ on a Ru(0001) surface covered with a vitreous SiO₂ bilayer (BL) was investigated and compared to the same reaction on bare Ru(0001). In both cases the reaction is characterized by moving reaction fronts. The reason for this might be related to the requirement of site release by O adatoms for further H₂‐dissociative adsorption. Apparent activation energies ( ) are found for the front motion of 0.59 eV without cover and 0.27 eV under cover. We suggest that the smaller activation energy but higher reaction temperature for the reaction on the SiO₂ BL covered Ru(0001) surface is due to a change of the rate‐determining step. Other possible effects of the cover are discussed. Our results give the first values for in confined space.     

Transition‐Metal‐Free Synthesis of 1,3‐Butadiene‐Containing π‐Conjugated Polymers

This work describes the synthesis of π‐conjugated polymers possessing arylene and 1,3‐butadiene alternating units in the main chain by the reaction of α,β‐unsaturated ester/nitrile containing γ‐H with aromatic/heteroaromatic aldehyde compound. By using 4‐(4‐formylphenyl)‐2‐butylene acid ethyl ester as a model monomer, the different polymerization conditions, including catalyst, catalyst amount, and solvent, are optimized. The polymerization of 4‐(4‐formylphenyl)‐2‐butylene acid ethyl ester is carried out by refluxing in ethanol for 72 h with 1,8‐diazabicyclo[5.4.0]undec‐7‐ene (DBU) as a catalyst to give a 1,3‐butadiene‐containing π‐conjugated polymer, poly(phenylene‐1,3‐butadiene), in 84.3% yield with and / (PDI) estimated as 6172 and 1.65, respectively. Based on this new methodology, a series of π‐conjugated polymers containing 1,3‐butadiene units with different substituents are obtained in high yields. A possible mechanism is proposed for the polymerization through a six‐membered ring transition state and then a 1,5‐H shift intermediate.

     

Structure,stability, and nature of bonding in carbon monoxide bound complexes (E = group 14 element; X = H,F, Cl,Br, I)

A density functional theory study is performed to predict the structures and stability of carbon monoxide (CO) bound (E = C, Si, Ge, Sn, Pb; X = H, F, Cl, Br, I) complexes. The possibility of bonding through both C‐ and O‐sides of CO is considered. Thermochemical analysis reveals that all the dissociation processes producing CO and are endothermic in nature whereas most of the dissociation reactions are endergonic in nature at room temperature. The nature of bonding in E? C/O bonds is analyzed via Wiberg bond index, natural population analysis, electron density, and energy decomposition analyses in conjunction with natural orbitals for chemical valence scheme. In comparison to C? O stretching frequency ( ) in free CO, while a red shift is noted in O‐side binding, the C‐side binding results in a blue shift in . The relative change in values in CO bound complexes on changing either E or X is scrutinized and possible explanation is provided in terms of polarization in the σ‐ and π‐orbitals and the relative strength of C→E or O→E σ‐donation and E→C or E→O π‐back‐donation. © 2016 Wiley Periodicals, Inc.     

Bending Vibrational Levels in the Electronic Spectra of Small Radicals

The role played by bending vibrations in the spectroscopy of small carbon‐containing radicals is illustrated by the patterns and effects shown by C₃, CCH, and C₃Ar. Because of the large change in the bending frequency between the ¹Σ⁺_g and ¹Π_u states of C₃, the ¹Π_u state provides one of the best known examples of the coupling of electronic and vibrational motion in linear molecules (the Renner–Teller effect). The ²Σ⁺ and ²Π states of CCH provide a classic instance of vibronic coupling between two close‐lying electronic states, which leads very rapidly to a chaotic pattern of mixed‐state vibrational energy levels, which can only be understood by extensive high‐quality ab initio calculations. C₃Ar is an approximately T‐shaped molecule with no less than four large‐amplitude vibrations. Its state provides a beautiful example of what happens to the angular momentum of a Π state of C₃ when the symmetry is lowered by complex formation.     

LaSr3NiRuO4H4: A 4d Transition‐Metal Oxide–Hydride Containing Metal Hydride Sheets

The synthesis of the first 4d transition metal oxide–hydride, LaSr₃NiRuO₄H₄, is prepared via topochemical anion exchange. Neutron diffraction data show that the hydride ions occupy the equatorial anion sites in the host lattice and as a result the Ru and Ni cations are located in a plane containing only hydride ligands, a unique structural feature with obvious parallels to the CuO₂ sheets present in the superconducting cuprates. DFT calculations confirm the presence of S= Ni⁺ and S=0, Ru²⁺ centers, but neutron diffraction and μSR data show no evidence for long‐range magnetic order between the Ni centers down to 1.8 K. The observed weak inter‐cation magnetic coupling can be attributed to poor overlap between Ni 3d and H 1s in the super‐exchange pathways.     

Nickel‐Catalyzed Stereospecific C−H Coupling of Benzamides with Epoxides

A Ni(OAc)₂‐catalyzed C?H coupling of 8‐aminoquinoline‐derived benzamides with epoxides has been developed. The reaction proceeds with concomitant removal of the 8‐aminoquinoline auxiliary to form the corresponding 3,4‐dihydroisocoumarins directly. Additionally, the nickel catalysis is stereospecific, and the cis‐ and trans‐epoxides are converted into the corresponding cis‐ and trans‐dihydroisocoumarins with retention of configuration, which is complementary to previously reported palladium catalysis. Moreover, while still preliminary, the C ?H functionalization is also achieved in the presence of modified NiCl₂ catalysts.     

Carbon–sulfur chains: A high‐resolution infrared and quantum‐chemical study of C3S and SC7S

In the course of a 5 μm high‐resolution infrared study of laser ablation products from carbon–sulfur targets, the ν₁ vibrational mode region of linear C₃S has been studied continuously from 2046 to 2065 cm^?1. Besides the prominent vibrational fundamental, the region was found to feature the , and even hot bands, the latter two of which were observed for the first time. Owing to the high signal‐to‐noise ratio obtained, the ν₁ mode of S could also be observed in natural abundance for the first time at high spectral resolution in the infrared. At 2061 cm^?1, hidden inside the branch of the C₃S ν₁ fundamental mode, a weak new band is observed which exhibits very tight line spacing and stems from a heavy both carbon and sulfur containing carrier. On the basis of high‐level quantum‐chemical calculations of selected carbon–sulfur chains and other carbon‐rich cumulenes, this feature is attributed to the ν₅ vibrational fundamental of linear SC₇S, which stands for the first gas‐phase spectroscopic detection of this long cumulenic chain.