Methylsalicylate: a rotational spectroscopy study

We report the free-jet rotational spectra of methylsalicylate, a molecule with a possible tautomeric and conformational equilibrium. In the ground electronic state, the molecule adopts a form stabilized by an intramolecular hydrogen bond between the phenolic hydrogen and the carbonylic oxygen, and this structure is characterized as the lowest-energy form by quantum chemical calculations. All rotational transitions are split because of the internal rotation of the methyl group, and the value of the barrier for this motion was determined to be V(3) = 5.38 kJ mol(-1).     

Rotational spectrum of a chiral alpha-hydroxyester: conformation stability and internal rotation barrier heights of methyl lactate

High resolution spectrum of methyl lactate, a chiral alpha-hydroxyester, has been investigated using a molecular jet Fourier transform microwave spectrometer. High level ab initio calculations were employed to study the conformational isomerism of methyl lactate. The observed rotational spectrum confirms that the most stable conformer has an intramolecular hydrogen bond of OH...O==C type, as predicted by the ab initio calculations. The internal rotation barrier heights of the ester methyl group and the alpha-carbon methyl group were calculated to be 5.4 and 14.5 kJ mol(-1) at the MP2/aug-cc-pVDZ level of theory for the most stable conformer. The internal rotation splittings due to the ester methyl group were observed and analyzed and the ester methyl group tunneling barrier height was determined experimentally to be 4.762 (3) kJ mol(-1).     

Internal dynamics features in the free jet rotational spectrum of the acetaldehyde-Kr molecular complex

The structure and the dynamics of internal motions in the complex formed between acetaldehyde and Kr are studied by free jet absorption microwave spectroscopy performed in the range 60-78 GHz. The fourfold structure of each rotational line is evidence of the vibration-rotation coupling between the overall rotation of the complex, a tunneling motion of the Kr atom between two equivalent positions and the internal rotation of the methyl group in the acetaldehyde moiety. The four sets of transitions could be fitted with a coupled Hamiltonian which allows for the Coriolis interaction obtaining the energy separation between the vibrational energy levels related to the tunneling motion, while the observed splittings due to the methyl group internal rotation were analyzed independently with an appropriate model. The potential energy barriers for the tunneling motion and the internal rotation of the methyl group have been calculated and the interaction of the rare gas atom with the acetaldehyde moiety is reflected in the change of the V(3) barrier to internal rotation in going from the molecule to the weakly bound complex.     

Conformational behaviour, hydrogen bond competition and intramolecular dynamics in vanillin derivatives: acetovanillone and 6-hydroxy-3-methoxyacetophenone

The conformational landscape of the structural isomers acetovanillone (apocynin, AV) and 6-hydroxy-3-methoxyacetophenone (HMAP) has been investigated in a supersonic jet using Fourier transform microwave spectroscopy. Two conformers have been detected in the jet-cooled expansion for each molecule (s-cis and s-trans in AV; s-trans and a-trans for HMAP), differing in the relative orientation of the acetyl and methoxy groups. Both molecules are stabilized by O-H···O or O-H···O=C hydroxyl intramolecular hydrogen bonds, either constraining the local conformations of the methoxy group in AV, or that of the acetyl group in HMAP. Internal rotation splittings have been observed in both conformers of each molecule, originated by the acetyl group, that yield information on the influence of the intramolecular hydrogen bonds on the methyl torsion. The similar internal rotation barriers in both molecules (6.6 and 7.4 kJ mol(-1) in AV; 7.3 and 7.0 kJ mol(-1) in HMAP) suggest that the acetyl torsion is only slightly affected by intramolecular hydrogen bonding. The absence of torsional tunnellings due to the methoxy group indicates torsional barriers above 10.2 and 8.9 kJ mol(-1) for AV conformers, 10.1 and 10.4 kJ mol(-1) for HMAP. Conformational ratios and relative free energies have been estimated from relative intensity measurements of the spectral lines. Ab initio (MP2) and density functional calculations using the recent M05-2X empirical functional have been used to aid the experimental work in describing the structures, internal rotation barriers and isomerization potentials.     

Noncovalent interactions and internal dynamics in dimethoxymethane-water

The millimeter-wave absorption and Fourier transform microwave spectra of five isotopologues of the 1:1 adduct of dimethoxymethane-water have been measured in supersonic expansions. Each rotational transition appears as a quintuplet, due to the internal rotation of the two methyl groups, which are nonequivalent in the adduct. The water moiety, linked asymmetrically to dimethoxymethane, behaves as a proton donor to one of its oxygen atoms and interferes with the internal rotation of the farther methyl group through a C...HO interaction. From the analysis of the observed splittings, the V(3) barriers to the internal rotation of the two methyl groups have been determined to be 6.83(8) and 6.19(8) kJ mol(-1). The hydrogen bond structural parameters have been determined, the O...HO and C...HO distances being 1.93(1) and 2.78(4) A, respectively.     

Pulsed field ionization-ZEKE spectroscopy of cresoles and their aqueous complexes: internal rotation of methyl group and intermolecular vibrations

Pulsed field ionization-ZEKE photoelectron spectroscopy and (1 + 1) R2PI spectroscopy have been applied to the cis- and trans-m-cresol.H2O clusters. The internal rotational structure in the S1 state has been re-assigned, and the potential curve has been determined for the cluster. The PFI-ZEKE spectra of the cis- and trans-isomers show low-frequency bands up to 1000 cm-1 above the adiabatic ionization potential IP0. The low-frequency bands are assigned to the internal rotation of the methyl group, the intermolecular stretching and their combination bands in the m-cresol.H2O cluster cation. Level energies and relative transition intensities are reproduced well by a one-dimensional rotor model with a three-fold axis potential. Potential curves for the internal rotation have been determined for both cis- and trans-isomers of m-cresol.H2O cations. The effect of the cluster formation upon the internal methyl rotation, and the interaction between the methyl rotation and the intermolecular vibration are discussed.     

The quenching of isopropyl group rotation in van der Waals molecular solids

X-ray diffraction experiments are employed to determine the molecular and crystal structure of 3-isopropylchrysene. Based on this structure, electronic structure calculations are employed to calculate methyl group and isopropyl group rotational barriers in a central molecule of a ten-molecule cluster. The two slightly inequivalent methyl group barriers are found to be 12 and 15 kJ mol(-1) and the isopropyl group barrier is found to be about 240 kJ mol(-1), meaning that isopropyl group rotation is completely quenched in the solid state. For comparison, electronic structure calculations are also performed in the isolated molecule, determining both the structure and the rotational barriers, which are determined to be 15 kJ mol(-1) for both the isopropyl group and the two equivalent methyl groups. These calculations are compared with, and are consistent with, previously published NMR (1)H spin-lattice relaxation experiments where it was found that the barrier for methyl group rotation was 11+/-1 kJ mol(-1) and that the barrier for isopropyl group rotation was infinite on the solid state NMR time scale.     

Molecular geometries of H2S···ICF3 and H2O···ICF3 characterised by broadband rotational spectroscopy

The rotational spectra of three isotopologues of H(2)S···ICF(3) and four isotopologues of H(2)O···ICF(3) are measured from 7-18 GHz by chirped-pulse Fourier transform microwave spectroscopy. The rotational constant, B(0), centrifugal distortion constants, D(J) and D(JK), and nuclear quadrupole coupling constant of (127)I, χ(aa)(I), are precisely determined for H(2)S···ICF(3) and H(2)O···ICF(3) by fitting observed transitions to the Hamiltonians appropriate to symmetric tops. The measured rotational constants allow determination of the molecular geometries. The C(2) axis of H(2)O/H(2)S intersects the C(3) axis of the CF(3)I sub-unit at the oxygen atom. The lengths of halogen bonds identified between iodine and sulphur, r(S···I), and iodine and oxygen, r(O···I), are determined to be 3.5589(2) ? and 3.0517(18) ? respectively. The angle, φ, between the local C(2) axis of the H(2)S/H(2)O sub-unit and the C(3) axis of CF(3)I is found to be 93.7(2)° in H(2)S···ICF(3) and 34.4(20)° in H(2)O···ICF(3). The observed symmetric top spectra imply nearly free internal rotation of the C(2) axis of the hydrogen sulphide/water unit about the C(3) axis of CF(3)I in each of these complexes. Additional transitions of H(2)(16)O···ICF(3), D(2)(16)O···ICF(3) and H(2)(18)O···ICF(3) can be assigned only using asymmetric top Hamiltonians, suggesting that the effective rigid-rotor fits employed do not completely represent the internal dynamics of H(2)O···ICF(3).     

Synthesis, Crystal, Calculated Structure and Biological Activity of N-（（6-bromo-2-methoxyquinolin-3-yl）（phenyl） methyl）-N-（1-adamantyl）-3-（dimethylamino） Propanamide

The halogenated hydrocarbon amination reaction between the original raw material N-((6-bromo-2-methoxyquinolin-3-yl)(phenyl)methyl)-3-chloro-N-(1-adamantyl) propanamide and dimethylamine hydrochloride produces the target molecule N-((6-bromo-2-methoxyquinolin-3- yl)(phenyl)methyl)-N-(1-adamantyl)-3-(dimethylamino) propanamide (C32H38BrN3O2, Mr = 576.56), and its structure was confirmed by elemental analysis, IR, 1H NMR, MS, and X-ray diffraction. This crystal is of monoclinic system, space group P21/c with a = 10.760(5), b = 14.768(5), c = 19.635(5), β = 113.969(16)°, V = 2851.0(18)3, Z = 4, Dc = 1.343 g/cm3, F(000) = 1208, μ(MoKα) = 1.475 mm-1, the final R = 0.0645 and wR = 0.2039. In total, 4681 independent reflections including 3164 observed ones with I > 2σ(I) were collected. The dihedral angle between substituted quinolyl and phenyl is 64.0°. Through C-H···O, C-H···N and C-H···Br weak hydrogen bonds among molecules, the whole molecule is stacked into a three-dimensional structure. The optimized geometric bond lengths and bond angles obtained by using density functional theory (DFT) have been compared with X-ray diffraction values. In addition, the preliminary biological test showed that the title compound has anti-Mycobacterium phlei 1180 activity.     

On the weak O-H···halogen hydrogen bond: a rotational study of CH3CHClF···H2O

We measured the molecular beam Fourier transform microwave spectra of six isotopologues of the 1?:?1 adduct of CH(3)CHClF with water. Water prefers to form an O-H···F rather than an O-H···Cl hydrogen bond. This is just the contrary of what was observed in the chlorofluoromethane-water adduct, where an O-H···Cl link was formed (W. Caminati, S. Melandri, A. Maris and P. Ottaviani, Angew. Chem., Int. Ed., 2006, 45, 2438). The water molecule is linked with an O-H···F bridge to the fluorine atom, with r(F···H(w)) = 2.14 ?, and with two C-H···O contacts to the alkyl hydrogens with r(C(1)-H(1)···O(w)) = 2.75 ? and r(C(2)-H(2)···O(w)) = 2.84 ?, respectively. Besides the rotational constants, the quadrupole coupling constants of the chlorine atom have been determined. In addition, information on the internal dynamics has been obtained.     

Two-dimensional tunneling Hamiltonian treatment of the microwave spectrum of 2-methylmalonaldehyde

The molecule 2-methylmalonaldehyde (2-MMA) exists in the gas phase as a six-membered hydrogen-bonded ring [HO-CH=C(CH(3))-CH=O] and exhibits two large-amplitude motions, an intramolecular hydrogen transfer and a methyl torsion. The former motion is interesting because the transfer of the hydrogen atom from the hydroxyl to the carbonyl group induces a tautomerization in the ring, i.e., HO-CH=C(CH(3))-CH=O-->O=CH-C(CH(3))=CH-OH, which then triggers a 60 degrees internal rotation of the methyl group attached to the ring. The microwave spectra of 2-MMA-d0, 2-MMA-d1, and 2-MMA-d3 were studied previously by Sanders [J. Mol. Spectrosc. 86, 27 (1981)], who used a rotating-axis-system program for two-level inversion problems to fit rotational transitions involving the nondegenerate A(+) and A(-) sublevels to several times their measurement uncertainty. A global fit could not be carried out at that time because no appropriate theory was available. In particular, observed-minus-calculated residuals for the E(+) and E(-) sublevels were sometimes as large as several megahertz. In the present work, we use a tunneling-rotational Hamiltonian based on a G(12) (m) group-theoretical formalism to carry out global fits of Sanders' 2-MMA-d0 and 2-MMA-d1 [DO-CH=C(CH(3))-CH=O] spectra nearly to measurement uncertainty, obtaining root-mean-square deviations of 0.12 and 0.10 MHz, respectively. The formalism used here was originally derived to treat the methylamine spectrum, but the interaction between hydrogen transfer and CH(3) torsion in 2-MMA is similar, from the viewpoint of molecular symmetry, to the interaction between CNH(2) inversion and CH(3) torsion in methylamine. These similarities are discussed in some detail.     

13C NMR relaxation study of molecular motions in tetraphenyltin and tetra(p-tolyl)tin in solution

The Woessner approach is applied to the 13C relaxation data for tetraphenyltin (1) and tetra(p-tolyl)tin (2) in CDCl3 solution over the temperature range 5-42 degrees C to obtain correlation times for rotational motions and hence the activation barriers. Quantum mechanical computations were carried out to obtain the rotational energy barriers for comparison. For 2 the relaxation data indicate (1) slower ring rotation than in 1, (2) highly hindered internal rotation of the methyl group. IR and chemical shift data support the hypothesis of hyperconjugation of the methyl correlated with interaction between the pi-electrons and the 5d orbitals of tin in the (p-tolyl)Sn moiety to account for the hindrances to the rotations of the ring and the methyl. The activation barrier for the tolyl group rotation is found to be much higher than that for the phenyl rotation. However, the Woessner approach yields an anomalously high barrier for the methyl rotation. An explanation based on correlated rotations of the tolyl ring and the methyl is offered.     

Flexible geometry of methyl amine

A new procedure was proposed to test the reliability of the flexible geometry of the methyl amine computed by different high level quantum chemical methods. Applying a vibration–inversion–internal rotation averaging process to the inverse inertial tensor the observable rotational coefficients of the molecule could be derived from the computed flexible geometry. Comparing the derived and the observed coefficients, the best quantum chemical method and basis set can be selected. In the paper the flexible geometry and the harmonic force field of the methyl amine were computed by the density functional methods BP86/6-311G(d) and B3P86/6-311G(d). The derived and the observed rotational coefficients show a reasonable agreement for the BP86 flexible geometry. The effective inversion–internal rotation potential surface was also determined from observed data. Relatively high zero point energy and pseudo potential contributions to the effective potential surface was found.     

Spin—rotational relaxation study of molecular reorientation in the presence of internal extended rotational diffusion

Molecular reorientation in the presence of internal rotation is investigated and an analytical expression for the spin—rotational rate of a nucleus attached to the internal rotor is obtained in terms of the internal angular-momentum correlation time. A model of a symmetric-top molecule undergoing anisotropic rotational diffusion is extended to include a modified extended diffusion of internal rotation. The result is applied to liquid toluene and the internal angular-momentum correlation time is evaluated from the ¹³C nuclear spin—rotational relaxation rate of the methyl carbon. A comparison with the previous result on the dipole—dipole relaxation data is made and the consistency of the present theory is discussed.     

Mobility of solid tert-butyl alcohol studied by deuterium NMR

The molecular mobility of solid deuterated tert-butyl alcohol (TBA) has been studied over a broad temperature range (103–283 K) by means of solid-state 2H NMR spectroscopy, including both line shape and anisotropy of spin–lattice relaxation analyses. It has been found that, while the hydroxyl group of the TBA molecule is immobile on the 2H NMR time scale (τC > 10(–5) s), its butyl group is highly mobile. The mobility is represented by the rotation of the methyl [CD3] groups about their 3-fold axes (C3 rotational axis) and the rotation of the entire butyl [(CD3)3-C] fragment about its 3-fold axis (C3′ rotational axis). Numerical simulations of spectra line shapes reveal that the methyl groups and the butyl fragment exhibit three-site jump rotations about their symmetry axes C3 and C3′ in the temperature range of 103–133 K, with the activation energies and preexponential factors E1 = 21 ± 2 kJ/mol, k(01) = (2.6 ± 0.5) × 10(12) s(–1) and E2 = 16 ± 2 kJ/mol, k(02) = (1 ± 0.2) × 10(12) s(–1), respectively. Analysis of the anisotropy of spin–lattice relaxation has demonstrated that the reorientation mechanism of the butyl fragment changes to a free diffusion rotational mechanism above 173 K, while the rotational mechanism of the methyl groups remains the same. The values of the activation barriers for both rotations at T > 173 K have the values, which are similar to those at 103–133 K. This indicates that the interaction potential defining these motions remains unchanged. The obtained data demonstrate that the detailed analysis of both line shape and anisotropy of spin–lattice relaxation represents a powerful tool to follow the evolution of the molecular reorientation mechanisms in organic solids.     

Large Amplitude Torsions in Nitrotoluene Isomers Studied by Rotational Spectroscopy and Quantum Chemistry Calculations

Rotational spectra of ortho-nitrotoluene (2-NT) and para-nitrotoluene (4-NT) have been recorded at low and room temperatures using a supersonic jet Fourier Transform microwave (MW) spectrometer and a millimeter-wave frequency multiplier chain, respectively. Supported by quantum chemistry calculations, the spectral analysis of pure rotation lines in the vibrational ground state has allowed to characterise the rotational energy, the hyperfine structure due to the ¹⁴N nucleus and the internal rotation splittings arising from the methyl group. For 2-NT, an anisotropic internal rotation of coupled −CH₃ and −NO₂ torsional motions was identified by quantum chemistry calculations and discussed from the results of the MW analysis. The study of the internal rotation splittings in the spectra of three NT isomers allowed to characterise the internal rotation potentials of the methyl group and to compare them with other mono-substituted toluene derivatives in order to study the isomeric influence on the internal rotation barrier.     

Internal Rotation of the Methyl Group in Cations of Toluene Derivatives

The potential of the internal rotation of the methyl group was determined for o-, m-, and p-fluorotoluene cations by pulsed field ionization spectroscopy. The potential of the internal rotational motion was also surveyed for other toluene derivative cations. It was found that the barrier height generally increases by ionization. The increase in the barrier height has been discussed in connection with the reduction of the internal rotational constant B by ionization. The geometrical distortion of the methyl group during the internal rotation has been suggested.     

Microwave spectrum,barrier to internal rotation and dipole moment in 5-methyl-pyrimidine

The microwave rotational spectrum of 5-methyl-pyrimidine has been investigated in the region from 8 to 27 GHz, the three types of lines to be expected for a molecule of this symmetry and with a very low sixfold barrier hindering internal rotation of the methyl top have been found: m = 0; |m| ≠ 0,3; |m| = 3n. From the m = 0 (a-type transitions) the rotational constants A′ (less methyl top) = 6108.41, B = 2642.198, C = 1844.196 MHz and the dipole moment μ = 2.881D have been determined. From the wide splitting of the lines |m| = 3, |k| = 1 the potential barrier has been derived as V₆ = 11.73 cal/mole.     

Rotationally correlated reactivity in the CH (v = 0, J, F(i)) + O2 → OH (A) + CO reaction

The rotational-state-selected CH (v = 0, J, F(i)) beam has been prepared by using an electric hexapole and applied to the crossed beam reaction of CH (v = 0, J, F(i)) + O(2) → OH (A) + CO at different O(2) beam conditions. The rotational state selected reactive cross sections of CH (RSSRCS-CH) turn out to depend remarkably on the rotational state distribution of O(2) molecules at a collision energy of ～?0.19 eV. The reactivity of CH molecules in the N = 1 rotational states (namely ∣J = 1∕2, F(2)> and ∣J = 3∕2, F(1)> states, N designates the angular momentum excluding spin) becomes strongly enhanced upon a lowering of the rotational temperature of the O(2) beam. The RSSRCS-CH in these two rotational states correlate linearly with the population of O(2) molecule in the specific K(O(2)) frame rotation number states: CH(|J = 1/2,F(2)>) with O(2)(|K(O(2)) = 1>);CH(|J = 3/2,F(1)>) with O(2)(|K(O(2)) = 3>). These linear correlations mean that the rotational-state-selected CH molecules are selectively reactive upon the incoming O(2) molecules in a specific rotational state; here, we use the term "rotationally correlated reactivity" to such specific reactivity depending on the combination of the rotational states between two molecular reactants. In addition, the steric asymmetry in the oriented CH (∣J = 1∕2,?F(2),?M = 1∕2>) + O(2) (|K(O(2)) = 1>) reaction turns out to be negligible (< ±1%). This observation supports the reaction mechanism as theoretically predicted by Huang et al. [J. Phys. Chem. A 106, 5490 (2002)] that the first step is an intermediate formation with no energy barrier in which C-atom of CH molecule attacks on one O-atom of O(2) molecule at a sideways configuration.     

Microwave Spectrum of Two-Top Molecule: 2-Acetyl-3-Methylthiophene

The microwave spectrum of 2-acetyl-3-methylthiophene (2A3MT) was recorded in the frequency range from 2 to 26.5 GHz using a molecular jet Fourier transform microwave spectrometer and could be fully assigned to the anti-conformer of the molecule, while the syn-conformer was not observable. Torsional splittings of all rotational transitions in quintets due to internal rotations of the acetyl methyl and the ring methyl groups were resolved and analyzed, yielding barriers to internal rotation of 306.184(46) cm⁻¹ and 321.813(64) cm⁻¹, respectively. The rotational and centrifugal distortion constants were determined with high accuracy, and the experimental values are compared to those derived from quantum chemical calculations. The experimentally determined inertial defect supports the conclusion that anti-2A3MT is planar, even though a number of MP2 calculations predicted the contrary.