Trans-cis octahedral interconversion pathway in diorganotin compounds

Using structural data from bis(bidentate)diorganotin compounds in the Cambridge Structural Database a potential pathway for trans-cis interconversion is envisaged with nondissociative Sn-donor bonds and retaining metal coordination number 6. C-Sn-C bond angles in the range 180-145° correspond to skewed trapezoid bipyramidal geometry for 6- and 5-membered O,O′ chelates; geometries that resemble the transition state of the trans-cis pathway starts forming at about C-Sn-C 134°. cis-Diorganotins explored in this work have C-Sn-C bond angles in the range 102-110°; it is the statistically favored configuration for diphenyltins. The proposed trans-cis conversion pathway is deduced from a series of geometries associated with decreasing the C-Sn-C bond angle and shows 2 weakly (secondary) bound chelating atoms lengthening their bonds until near the transition state and later strengthening; they end up cis to each other and opposite to the organic groups. Conversely, the other 2 (primary) donors shorten their bonds until the transition state is reached and later lengthen; they end up trans to each other. The entire transformation from trans to cis configuration occurs with relative rotation of 3 bonds.     

cis–trans Geometrical isomerization of bis(2-pyridinecarboxylato)nitrosylruthenium complex accompanying electrochemical one-electron reduction

cis-[Ru(NO)(CH₃CN)(pyca)₂] and trans-[Ru(NO)(OH)(pyca)₂] (pyca = 2-pyridinecarboxylato) were synthesized and characterized by X-ray crystallography. Electrochemical behaviors of cis-[Ru(NO)(CH₃CN)(pyca)₂] and cis-[Ru(NO)(CH₃O)(pyca)₂] in acetonitrile were studied. These complexes showed two reduction processes in CH₃CN. The controlled potential electrolyses of cis-[Ru(NO)(CH₃O)(pyca)₂] in a methanol–acetonitrile mixed solution were performed at the potential of the first reduction process. trans-[Ru(NO)(CH₃O)(pyca)₂] was isolated from the electrolyzed solution and characterized by IR and CV. The cis–trans geometrical change reaction occurred in the electrochemical one-electron reduction of cis-[Ru(NO)(CH₃O)(pyca)₂].     

Comparative study of azobenzene and stilbene bridged crown ether p-tert-butylcalix[4]arene

Photo-switchable calixarenes consisting of a stilbene or azobenzene bridge, spanning the narrow rim as a switching unit, were synthesized through reductive coupling of o-, m- and p-bis-benzaldehyde and bis-nitrobenzene-substituted calix[4]arenes. Both cis- and trans-stilbenes were produced from the reductive coupling of the o- and m-bis-benzaldehyde with the cis isomer being predominant for both regioisomers, whilst the coupling of p-bis-benzaldehyde gave only cis product. On the other hand, the only isolable product obtained from the reductive coupling of bis-o- and bis-m-nitrobenzene was the corresponding trans-azobenzene and the coupling product from bis-p-nitrobenzene was not stable. Each of the synthesized compounds showed a photostationary state in their cis-trans isomerization. The complexation of alkali metal ions was observed for only the o-azobenzene derivative suggesting that the lone pair of N-atom in the azo bridge participates in this process.     

Addition of lithium ethyl fluoroacetate to cis and trans α,β-epoxyaldehydes. Access to C2 fluorinated butyrolactones

The aldolisation reaction of lithium ethyl fluoroacetate with cis and trans α,β-epoxyaldehydes in their racemic forms proceeds with good C₃-OH diastereoselectivity and much less at the C₂-F carbon atom. A two-step reaction on the major aldol compounds (iodination, lactonisation) led to racemic functionalised C₂ fluorinated lactones, possessing a C₂/C₃cis relationship between the fluorine and hydroxyl groups.     

Azo-pyrene–based fluorescent sensor of reductive cleavage of isomeric azo functional group

In this study we investigated the reductive azo cleavage of an azo compound presenting a pyrene fluorophore (Azo-py). Because of dramatic changes in its fluorescence, Azo-py could be used as a monitoring system for the reductive azo cleavage. Electron transfer from the pyrene unit to the azo moiety induced fluorescence quenching; this quenched fluorescence was recovered after the reductive azo cleavage. IR and NMR spectroscopy were used to study the various structural states. The rate of reductive cleavage of the azo compound, determined through fluorescence monitoring, depended on its structural state: the cleavage of trans-Azo-py was much faster than that of the cis-Azo-py. Furthermore, the Azo-py fluorophore was highly sensitive to the presence of zinc, but not other metal compounds, and the pH.     

N,N′ di n-hexyladipamide,a model for nylon 6,6

During research on model molecular compounds for synthetic polyamides, the crystal structure of N,N′ di n-hexyladipamide (NNDHA) has been determined by single crystal X-ray diffraction. The structure was solved by direct methods and refined to a final R value of 0.054. The molecule has an all-trans planar conformation. The packing consists of layers of molecules linked by hydrogen bonds in c direction. Molecular structure and packing resemble closely those reported for polyhexamethylenadipamide (nylon 6,6).     

Flash vacuum pyrolysis (fvp) of some hexahydroquinazolin-4(1H)-ones

Some cis/trans-2-thioquinazolin-4-ones and their 2,4-dione analogs were subjected to flash vacuum pyrolysis. The cis- and trans-thio compounds reacted at lower temperatures than the cis- and trans-dioxo analogs, showing a lower thermal stability. All of these compounds afforded similar reactions: ring opening to the corresponding iso(thio)cyanate, the loss of H and NCS to form three isomeric cyclohexadienes and then aromatization to form the corresponding benzamide. The cis-dioxo compound also underwent a competitive retro Diels-Alder (RDA) reaction to form 3-phenylpyrimidine-2,4(1H,3H-dione(3-phenyluracil)) and butadiene. Kinetic measurements of the ring opening reaction supported a concerted β-elimination as the most probable mechanism.     

Conformations of N,N'-diphenyl-N-ethylthiourea and its related compounds in the solid state

The conformations of the related compounds RPhTUPh, RPhUPh and DRTUPh, DRUPh have been determined in the solid state by studying their v(N-H) vibrations and comparison with the conformations in solution. Only EPhTUPh in the solid state is observed to exhibit both cis and transv(N-H) bands. The coexistence of the cis and trans forms is suggested to take place with a balance between Ph-Ph interaction and hydrogen bond formation. In this balance the steric effect of the R group on the CS group plays an important role. For DRTUPh and DRUPh out-trans isomerism is discussed. The importance of hydrogen bond formation is emphasized as a factor determining conformations in the solid state.     

6-Chloro-2(2H)-pyranone: a new 2(2H)-pyranone synthon

6-Chloro-2(2H)-pyranone, which can be prepared in high yield from commercially available trans-glutaconic acid, undergoes facile Pd/Cu-catalyzed reaction with various 1-alkynes to give rise to the corresponding 6-(1-alkynyl)-2(2H)-pyranones in moderate to good yields. These last hitherto unknown compounds have been used as direct precursors to 6-alkyl- and 6-[(Z)-1-alkenyl]-2(2H)-pyranones.     

Triazolopeptides: chirospecific synthesis and cis/trans prolyl ratios of structural isomers

As cis/trans prolyl isomerization plays a crucial role in various biological processes, peptide mimics capable of modifying the cis/trans Xaa-Pro ratio are of particular interest. A practical approach toward proline derived triazolopeptides employing [3+2] azide-alkyne cycloadditions as the key reaction step and the analysis of their cis/trans prolyl ratios are reported. Structural investigations indicated the adjustability of both the cis-percentage and the conformational stability toward intramolecular H-bonding effects.     

Synthesis of maresin 1 and (7S)-isomer

Maresin 1 (with the 7R carbon) and (7S)-maresin 1 were synthesized stereoselectively. The conjugated triene system was constructed by Pd-catalyzed coupling of the trans cis-dienylborane (the C10–C22 part) with the trans vinyl iodide corresponding to the C1–C9 part. The stereogenic centers at C7 and C14 were created by Ru-catalyzed asymmetric reduction of ketone and asymmetric epoxidation/kinetic resolution of the racemic alcohol, respectively.     

Synthesis of novel thiol taxoids based on the 7,10-di-(2,2,2-trichloroethyloxycarbonyl)-10-deacetylbaccatin III: both the syn and anti 10-deacetyl-2′-deoxy-2′-mercaptopaclitaxels

Two new kinds of docetaxel compound, with a mercapto group instead of the hydroxyl on the C13 side chain (both syn and anti), via the 7,10-di-(2,2,2-trichloroethyloxycarbonyl)-10-deacetylbaccatin III route, were synthesized. The uses of trans and cis oxazoline compounds, and their stereoselective ring-opening reactions with thiolacetic acid, were proved to be key steps.     

Synthesis of tetramic acids with a benzo[f]indolizine skeleton. Transannular rearrangements in pyrazino[1,2-b]isoquinolin-4-ones

Pyrazino[1,2-b]isoquinoline-1,4-diones (3) having a bulky activating group at the N(2)-position were rearranged to tetramic acids with a benzo[f]indolizine skeleton (8) in the presence of K^tBuO or LHMDS as bases. This rearrangement was diasteroselective for the 6,11a-trans-isomers of the starting compounds. 1-Hydroxy-pyrazino[1,2-b]isoquinolin-4-one (7) afforded a 1-trichloroacetamido derivative (14) after treatment with trichloroacetonitrile and a catalytic amount of sodium hydride as a base, through two subsequent base-promoted transannular rearrangements. In summary, the combination of functions in the piperazine ring of the starting tricyclic compounds conferred to them new reactivities that imply different base-promoted transannular rearrangements and led to unexpected transformations.     

First separation and characterization of cis and trans 1,2-bisaryloxy perfluorocyclobutanes

4-Bromotrifluorovinyloxybenzene (4-Br-TFVE) undergoes cyclodimerization upon heating at 150 °C affording cis and trans isomers of 1,2-bis(4-bromophenoxy)hexafluorocylcobutane. Stereoisomers were separated by selective crystallization, confirmed by single crystal X-ray, and further characterized by NMR. Remarkable difference in the solid state structures include aryl to aryl dihedral angles of 12° for the trans isomer and 88° for the cis isomer. Polymers containing roughly equal amounts of cis and trans fused perfluorocyclobutyl (PFCB) rings should be expected to have low crystallinity due to the marked difference in the two unit cells as is observed.     

Isomer distinction by ion/molecule reactions in an ion trap: The case of C5H8

Isomeric C₅H₈ compounds are distinguished by monitoring the products of their reactions with mass-selected ions generated from the individual isomers. This procedure, done by selecting appropriate reaction times in a quadrupole ion trap, yields data for the compounds which are more structure-selective than those obtained by collision-induced dissociation or dissociative charge stripping, both procedures in which isomer distinction is based on the behavior of the molecular ions rather than the neutral molecules themselves. All isomers except cis and trans 1,3-pentadiene can be distinguished by their ion/molecule reactions. The conjugated dienes, 1,3-pentadiene and isoprene, form the deprotonated C₁₀H₁₅⁺ dimer which is not generated by 1,4-pentadiene, cyclopentene, or by the allenes, 2,3-pentadiene and 3-methyl-1,2-butadiene. This clear, qualitative difference enables the isomers 1,4- and 1,3-pentadiene to be distinguished, which is otherwise difficult.     

Laser photolysis study of trans→cis photoisomerization of trans-1-phenyl-2-(2-naphthyl) ethylene

The direct trans→cis photoisomerization of trans-1-phenyl-2-(2-naphthyl) ethylene (trans-PNE) in liquid solution at room temperature was studied by the nanosecond laser photolysis technique. The time-resolved S_n←S₁ and T_n←T₁ absorption spectra were observed with trans-PNE at 300 K and 77 K. The lifetime of the triplet state of trans-PNE was found to be much shorter in liquid solution at room temperature than in rigid solution at 77 K. This fact and the effect of a triplet quencher shows that the photoisomerization of trans-PNE occurs mainly via the triplet state.     

Components of the Lauraceae family—I : New lactonic compounds from Litsea japoncia

Six new compounds, named litsenolides A₁, A₂, B₁, B₂, C₁ and C₂, have been isolated from the roots of Litsea japonica (Japanese name “Hamabiward). Spectral and chemical evidence shows that these six compounds are three pairs of β-hydroxy-γ-methyl-αβ′-unsaturated-γ-lactones having a long carbon chain terminated with a methyl (C series), an allyl (A series) or a propargyl (B series) group. The two components of each pair differ only in the structure, cis or trans, at the double bond conjugated with the lactone group. The absolute stereochemistry of the compounds is also discussed.     

Conversion of a trans-syn-trans to a cis-syn-trans perhydrobenz[e]indenone triggered by intramolecular 1,5-hydrogen transfer

The conversion of a trans-syn-trans perhydroiodomethyltrimethylbenz[e]indenone to the corresponding cis-syn-trans perhydrobenz[e]indenone occurred during the reduction of the iodomethyl to a methyl group under radical conditions.     

Relative dioxygenation rates of some trans-Ir(CO)X(PR3)2 complexes: The effect of phosphine and halogen changes

Relative rates of dioxygen uptake by the complexes trans-Ir(CO)X(PPh₂R)₂ (R = Ph, Me, Et; X = F, Cl, Br, I) have been measured in dichloromethane and found to follow the order R = Ph<Et<Me and X = F <Cl<Br<I. The basicity of these trans-Ir(CO)X(L)₂ complexes, as measured by their affinity for dioxygen, is not reflected in the energy of the ν(CO) absorption in the parent compounds; a previous report that complex basicity ∝1/ν(CO) does not hold for the complexes reported here.     

The rhodophytin and chondriol natural products; structures of several new acetylenes from laurencia, and a reassignment of structure for cis-rhodophytin

The structures of five new halogenated vinyl acetylenes are described which are natural products from various species of the red seaweed Laurencia. The structure of epoxyrhodophytin (1) was determined by spectral, chemical, and X-ray diffraction analyses. The structures of trans-rhodophytin (5) and trans-chondriol (8) are based on chemical and spectral comparisons with the previously reported compounds cis-rhodophytin (4) and cis-chondriol (7). The structures of cis-chondrin (14) and trans-chondrin (15) were secured by synthesis from cis- and trans-chondriol, respectively. The reactivity of these enol-ethers to various conditions of catalytic hydrogenation has been examined in detail. Hydrogenation yields an unexpected and facile incorporation of oxygen into the reaction products. Based upon these studies, and upon combustion analysis, the structure of rhodophytin has been revised as the vinyl ether rather than the vinyl peroxide originally proposed.