PICOSECOND LASER PHOTOLYSIS OF SQUID RHODOPSIN AT ROOM AND LOW TEMPERATURES

Abstract. Squid rhodopsin extracted with 2% digitonin (pH 10.5 or 7.0) was excited with a 347 nm light pulse from a mode-locked ruby laser at room temperature. Within 19 ps after the excitation, absorbance at 430 nm due to hypsorhodopsin increased and subsequently decreased with a decay time of 45 ± 10 ps. Absorbance at 550 nm due to bathorhodopsin increased with a rise time of 50 ± 10 ps. These results are the first observations of hypsorhodopsin at room temperature and clearly show that hypsorhodopsin is a precursor of bathorhodopsin which has been considered to be the earliest photoproduct in the photobleaching process of rhodopsin.
Hypsorhodopsin appeared with a rise time of 70 ± 10 ps at 421 nm at liquid nitrogen temperature without any bathorhodopsin being observed during the formation of hypsorhodopsin. An experiment using an N₂ laser showed that squid bathorhodopsin converted to lumirhodopsin with a decay time of about 300 ns at room temperature.     

SIMULATION ANALYSIS OF THE PHOTOCONVERSION PROCESS OF SQUID RHODOPSIN AT LIQUID HELIUM TEMPERATURE

The photoconversion process among squid rhodopsin, bathorhodopsin isorhodopsin and hypsorhodopsin was studied at liquid helium temperature. We evaluated the relative quantum yields of the photoconversion among four pigments by analysing the time-dependent change of absorption spectra. The result suggests that hypsorhodopsin is the common intermediate of rhodopsin and isorhodopsin, and there is no direct conversion between rhodopsin and isorhodopsin. Furthermore, rhodopsin converts to hypsorhodopsin or bathorhodopsin much more efficiently than does isorhodopsin, and bathorhodopsin does not convert directly to hypsorhodopsin. It was also found that rhodopsin and isorhodopsin convert to bathorhodopsin more efficiently than to hypsorhodopsin. In particular, the quantum yield of conversion from rhodopsin to bathorhodopsin was found to be about twice as large as that from rhodopsin to hypsorhodopsin. This result is somewhat in disagreement with the result obtained from the laser flash experiments at room and liquid nitrogen temperatures. The reason for the difference between the two experimental results is discussed.     

SQUID HYPSORHODOPSIN

Abstract— Squid hypsorhodopsin is produced by irradiating rhodopsin or isorhodopsin with yellow light (>480nm) at liquid He temperature (4K). Compared with cattle rhodopsin, squid rhodopsin easily converts to a photosteady state mixture composed of rhodopsin, isorhodopsin, hypsorhodopsin and bathorhodopsin at this temperature and the amount of hypsorhodopsin in the mixture is high. Hypsorhodopsin has a main absorption peak at 446 nm, and its extinction coefficient is 1.16 times larger than that of rhodopsin. On warming above 35 K, squid hypsorhodopsin converts to bathorhodopsin. A kinetic analysis indicates that the hypsorhodopsin can be formed not only from rhodopsin but also from isorhodopsin. On absorption of light. both squid bathorhodopsin and hypsorhodopsin convert to a mixture of rhodopsin and isorhodopsin.     

THE FORMATION OF TWO FORMS OF BATHORHODOPSIN AND THEIR OPTICAL PROPERTIES

Abstract— Using two kinds of rhodopsin preparations (digitonin extract and rod outer segments suspension), we measured changes in absorption spectra during the conversion of rhodopsin or isorhodopsin to a photosteady state mixture composed of rhodopsin, isorhodopsin and bathorhodopsin by irradiation with blue light (437 nm) at 77 K and during the reversion of bathorhodopsin to a mixture of rhodopsin and isorhodopsin by irradiation with red light (> 650 nm) at 77 K. The reaction kinetics could be expressed with only one exponential in the former case and with two exponentials in the latter case. These data suggest that both rhodopsin and isorhodopsin are composed of a single molecular species, while bathorhodopsin is composed of two molecular species, designated as bathorhodopsin₁ and bathorhodopsin₂. The absorption spectra of these bathorhodopsin were calculated by two different methods (kinetic method and warming-cooling method). The former was based on the kinetics of the conversion of two forms of bathorhodopsin by irradiation with the red light. The spectra obtained by this method were consistent with those obtained by the warming-cooling method. Bathorhodopsin₁ and bathorhodopsin₂ have Λ_max at 555 and 538 nm, respectively. The two forms of bathorhodopsin are interconvertible in the light, but not in the dark. Thus, we suggest that a rhodopsin molecule in the excited state relaxes to either bathorhodopsin₁ or bathorhodopsin₂ through one of the two parallel pathways.     

EXISTENCE OF HYPSORHODOPSIN AS THE FIRST INTERMEDIATE IN THE PRIMARY PHOTOCHEMICAL PROCESS OF CATTLE RHODOPSIN

It has long been believed that bathorhodopsin is the first intermediate of visual process for cattle rhodopsin. In the present paper hypsorhodopsin is shown to be the first intermediate by the use of picosecond spectropic technique. The main first intermediate, hypsorhodopsin, is formed with the time constant of 15 ± 5 ps. The time constant of the formation of bathorhodopsin from hypsorhodopsin is 50 ± 20 ps. Bathorhodopsin intermediates formed directly from excited state rhodopsin and those formed indirectly through hypsorhodopsin are 71/2^#% and 93%, respectively, of total bathorhodopsin intermediates in octylglucoside buffered solution. Batho intermediates formed directly and indirectly are 0% and 100%. respectively, of total batho intermediates in LDAO buffered solution.     

ON THE STATE OF CHROMOPHORE PROTONATION IN RHODOPSIN: IMPLICATION FOR PRIMARY PHOTOCHEMISTRY IN VISUAL PIGMENTS

Resonance Raman multicomponent spectra of bovine rhodopsin, isorhodopsin, and bathorhodopsin are obtained at low temperature. Application of the double beam, 'pump-probe' technique allows an extraction of the rhodopsin and bathorhodopsin spectra in both protonated and deuterated media. Our results show that the Schiff bases of both rhodopsin and bathorhodopsin are fully protonated and the degree of protonation is unaffected by the rhodopsin-bathorhodopsin transformation. Further, the data support the concept or cis-trans isomerization as occurring in this transition. The effect of these results on various models for the primary photochemical event in vision is discussed.     

NANOSECOND LASER PHOTOLYSIS OF RHODOPSIN AND ISORHODOPSIN

Kinetic and spectral measurements have been carried out on the primary intermediate in the photolysis of rhodopsin and isorhodopsin, initiated by a 457 nm, 6 ns (FWHM) laser pulse. In rhodopsin the kinetic decay of bathorhodopsin was found to be 140 ± 15 ns at 20°C. The decay of bathorhodopsin to lumirhodopsin has an activation energy of 51 ± 4 kJ/mol (12.2 ± 1 kcal/mol). The decay kinetics of bathorhodopsin were found to be the same for rhodopsin in membrane and detergent solubilized suspensions. The kinetic decay of the batho product in the photolysis of isorhodopsin was found to be the same as rhodopsin.
The corrected transient spectrum 50 ns following excitation in rhodopsin has two peaks near 560 and 440 nm. A peak was also observed in isorhodopsin near 550 nm at 50 ns following excitation but no transient was observed in the blue. The 550 nm peak in isorhodopsin has an intensity similar to that in rhodopsin indicating that the quantum yields for the formation of batho products of rhodopsin and isorhodopsin are similar under the irradiation conditions used here. Transient spectra for rhodopsin and isorhodopsin 1 μs following excitation are also different. In isorhodopsin the corrected transient spectrum has a peak at 500 nm, similar to low temperature steady state irradiation spectra. The 1 μs transient spectrum in rhodopsin is more intense than in isorhodopsin and shows a peak at 475 nm.     

STRUCTURE OF HYPSORHODOPSIN: ANALYSIS BY FOURIER TRANSFORM INFRARED SPECTROSCOPY AT 10 K

Abstract— Vibrational bands of hypsorhodopsin in the difference Fourier transform infrared spectra were identified as the bands which arose after formation of isorhodopsin by successive irradiations of bovine rhodopsin at 10 K with >500 nm light, and also as the bands disappeared upon conversion to bathorhodopsin by warming. The chromophore bands were assigned by the bands which shifted upon deuterium substitution of the polyene chain of the retinylidene chromophore. The presence of chromophore bands which shift by D₂O exchange clearly shows that the Schiff base chromophore of hypsorhodopsin is protonated. The amide I bands and several other protein bands of hypsorhodopsin appeared at the same frequencies as those of bathorhodopsin, but they are different from those of rhodopsin and isorhodopsin. Furthermore, like bathorhodopsin, hypsorhodopsin displays the C_l—H out-of-plane bending mode which is weakly coupled with C₁₂-_-–H out-of-plane mode. These facts show that hypsorhodopsin has a chromophore conformation and chromophore-opsin interaction more similar to bathorhodopsin than to rhodopsin and isorhodopsin.     

QM/MM study of the structure, energy storage, and origin of the bathochromic shift in vertebrate and invertebrate bathorhodopsins

By comparing the results from a hybrid quantum mechanics/molecular mechanics method (SORCI+Q//B3LYP/6-31G*:Amber) between vertebrate (bovine) and invertebrate (squid) visual pigments, the mechanism of molecular rearrangements, energy storage, and origin of the bathochromic shift accompanying the transformation of rhodopsin to bathorhodopsin have been evaluated. The analysis reveals that, in the presence of an unrelaxed binding site, bathorhodopsin was found to carry almost 27 kcal/mol energy in both visual pigments and absorb (λ(max)) at 528 nm in bovine and 554 nm in squid. However, when the residues within 4.0 ? radius of the retinal are relaxed during the isomerization event, almost ～16 kcal/mol energy is lost in squid compared to only ～8 kcal/mol in bovine. Loss of a larger amount of energy in squid is attributed to the presence of a flexible binding site compared to a rigid binding site in bovine. Structure of the squid bathorhodopsin is characterized by formation of a direct H-bond between the Schiff base and Asn87.     

Assigning the resonance Raman spectral features of rhodopsin, isorhodopsin and bathorhodopsin in bovine photostationary state spectra.

Abstract—High resolution resonance Raman spectra of rhodopsin. isorhodopsin and photostationary state mixtures containing a high percentage of bathorhodopsin arc presented. New spectral features are detected which were not obsei-ved in lower resolution studies by other workers. All of the hands in the photostationary state spcctra arc assigned based on pure rhodopsin and isorhodopsin resonance Raman results and alterations in the photostationary state mixture. The spectral features in these spectra are invariant from 20 to 150K indicating that retinal and protein structural alteration, consistent with a model of excitation proposed by Lewis, occurs in steady-state spectra even at 20 K. In addition, the relative intensity of certain features in the photostationary state spectra are altered upon D₂O suspension. One explanation for these alterations is that the contributions of various intcrmediates to the photostationary state mixture are changed when membrane fragments are suspended in D₂O.     

QUALITATIVE STUDIES OF THE LOW TEMPERATURE PHOTOCHEMISTRY OF RHODOPSIN AND RELATED PIGMENTS

Abstract— Rhodopsin, the isomeric pigments formed from 9- cis - and 9, 13- dicis -retinal, and the synthetic pigments formed from 9- cis - and 11- cis -14-methylretinal were irradiated with 490 nm light at -196C. Absorption spectral changes indicate that a distinguishable bathorhodopsin type intermediate may be formed for each pigment. The bathorhodopsin intermediates of the 9- cis pigments have band maxima hypsochromically shifted by4–5 nm compared to their corresponding rhodopsins. The bathorhodopsin type intermediate formed upon irradiation of 9, 13- dicis -rhodopsin has an absorption that maximizes 6 nm shorter than that of rhodopsin. Band maxima of the bathorhodopsin intermediates of the 14-methylrhodopsins are bathochromatically shifted ca. 8 nm compared to their corresponding rhodopsins.     

DEPENDENCY OF PHOTON DENSITY ON PRIMARY PROCESS OF CATTLE RHODOPSIN

The primary photochemical reactions of cattle rhodopsin suspended in H2O or D2O were compared between excitation with both a weak and an intense picosecond laser pulse (wavelength, 532 nm; duration, 25 ps) at room temperature. The time-dependent change of absorbance at about 575 nm demonstrated that photohodopsin, a precursor of bathorhodopsin, was produced immediately after the excitation with a weak picosecond laser pulse. It decayed to bathorhodopsin with a time constant of 45 ps which is close to the value reported previously [Shichida et al., (1984) Photobiochem. Photobiophys., 7, 221-228]. No deuterium effect was observed in this process. Excitation with an intense laser pulse induced instantaneous increase of the absorbance at about 575 nm and remained at almost constant level on the picosecond time scale, which was in good agreement with the pioneering work [Busch et al., (1972) Proc. Natl. Acad. Sci., USA, 69, 2802-2806]. No deuterium effect was observed in this photochemical process.     

LOW-TEMPERATURE TRAPPING OF EARLY PHOTOINTERMEDIATES OF α-ISORHODOPSIN

Abstract— a-Isorhodopsin, an artificial visual pigment with a 9- cis -4,5-dehydro-5,6-dihydro(a)retinal chromophore, was photolyzed at low temperatures and absorption difference spectra were collected as the sample was warmed. A bathorhodopsin (Batho)-like intermediate absorbing at ca 495 nm was detected below 55 K, a blue-shifted intermediate (BSI)-like intermediate absorbing at ca 453 nm was observed when the temperature was raised to 60 K and a lumirhodopsin (Lumi)-like intermediate absorbing at ca 470 nm was found when the sample was warmed to 115 K. Photointermediates from this pigment were compared to those of native rhodopsin and 5,6-dihydroisorhodopsin. As in native rho-dopsin, Batho is the first intermediate detected in a-isorhodopsin, though unlike native rhodopsin at low temperatures BSI is observed prior to Lumi formation. a-Isorhodopsin behaves similarly to 5,6-dihydroisorhodopsin, with the same early intermediates observed in both artificial visual pigments lacking the C₅-C₆ double bond. The transition temperature for BSI formation is higher in a-isorhodopsin, suggesting an interaction involving the chromophore ring in BSI formation. The transition temperature for Lumi formation is similar for these two pigments as well as for native rhodopsin, suggesting comparable changes in the protein environment in that transition.     

ORIENTATION OF RETINYLIDENE CHROMOPHORE OF HYPSORHODOPSIN IN FROG RETINA

Abstract— Hypsorhodopsin and bathorhodopsin were formed in the frog retina by irradiating rhodopsin at liquid He temperature (9 K) with orange light (> 520 nm) and blue light (437 nm), respectively. Hypsorhodopsin was converted to bathorhodopsin in the retina by warming above 32 K in the dark. Similar phenomena were observed in the rod outer segment suspension. A difference spectrum between hypsorhodopsin and bathorhodopsin in the retina produced by warming was almost identical with that in the rod outer segment suspension. This suggests that the transition dipole moment of hypsorhodopsin is parallel to the disk membrane plane which is also parallel to that of bathorhodopsin.     

TEMPERATURE DEPENDENCE OF PICOSECOND FLUORESCENCE KINETICS OF A CYANOBACTERIAL PHOTOSYSTEM I PARTICLE*

Picosecond time-resolved fluorescence of photosystem I particles isolated from Synechococcus sp. was recorded in the wavelength range from 680 nm to 736 nm for temperatures of 6°C to 42°C and - 100°C using the single-photon-timing technique. By global analysis of the data we found four contributing lifetime components at the higher temperatures (T₁ ' 12 ps, T₁= 35 ps, T₃ ' 65 ps, T₄ ' 1000 ps). We attribute T₁ to an energy transfer between two pigment pools, T₂ to the charge separation process in the reaction center, component T₃ is assigned to aggregate and T₄ to uncoupled chlorophyll emission. The corresponding decay-associated spectra are presented. We also applied a target analysis procedure to fit parameters of a kinetic model directly to the data. The resulting rate constants and species-associated spectra are discussed. The data indicate substantial spectral heterogeneity in the antenna with at least three substantially different chlorophyll pools. The overall exciton decay kinetics (by charge separation) is trap-limited.     

THE SENSORY PHOTORECEPTORS OF Halobacterium halobium REVISITED: ACTION SPECTRA and INFLUENCE OF BACKGROUND LIGHT*

Abstract– Action spectra of the light-dependent behavior of Halobacterium and the effect of background light have been measured with regard to the current hypothesis of Spudich and Bogomolni [Nature 312 ,509–513 (1984)], which proposes sensory rhodopsin I (sRI₅₈₇) to be the receptor for long-wavelength light, and its photoproduct S₃₇₃ to be the receptor for UV light. The action spectrum shows three maxima for attractant responses (prolonged swimming intervals) at 565, 590, and 610 nm, and two maxima for repellent responses (shortened intervals) at 370 and 480 nm. The latter is assigned to sensory rhodopsin II (P-480). All peaks are red-shifted after substitution of the endogeneous retinal by 3, 4-dehydroretinal. The peaks at 590 and 610 nm are suppressed by long-wavelength background light. Ultraviolet background light converts all attractant peaks into repellent peaks. The response at 370 nm is strongly activated by visible background light, the maximal effect occurring with 510 nm. The activated state declines with a half-life of about 1.2 s. In a growing culture, full sensitivity to UV and blue light is restored about 10 h earlier than sensitivity to long-wavelength light. Some of the results cannot easily be explained by the sRI₅₈₇/S₃₇₃ hypothesis. Explanations for the three maxima in the long-wavelength range and for the maximal activation of the UV response by 510 nm light are discussed.     

Anti-stokes Raman study of vibrational cooling dynamics in the primary photochemistry of rhodopsin

Picosecond Stokes and anti-Stokes Raman spectra are used to probe the structural dynamics and reactive energy flow in the primary cis-to-trans isomerization reaction of rhodopsin. The appearance of characteristic ethylenic, hydrogen out-of-plane (HOOP), and low-wavenumber photoproduct bands in the Raman spectra is instrument-response-limited, consistent with a subpicosecond product appearance time. Intense high and low-frequency anti-Stokes peaks demonstrate that the all-trans photoproduct is produced vibrationally hot on the ground-state surface. Specifically, the low-frequency modes at 282, 350, and 477 cm(-1) are highly vibrationally excited (T > 2000 K) immediately following isomerization, revealing that these low-frequency motions directly participate in the reactive curve-crossing process. The anti-Stokes modes are characterized by a approximately 2.5 ps temporal decay that coincides with the conversion of photorhodopsin to bathorhodopsin. This correspondence shows that the photo-to-batho transition is a ground-state cooling process and that energy storage in the primary visual photoproduct is complete on the picosecond time scale. Finally, unique Stokes vibrations at 290, 992, 1254, 1290, and 1569 cm(-1) arising from the excited state of rhodopsin are observed only at 0 ps delay.     

FEMTOSECOND STUDIES OF PRIMARY PHOTOPROCESSES IN OCTOPUS RHODOPSIN

Abstract— Femtosecond spectroscopy of octopus rhodopsin in H₂O and D₂O was performed over a very wide spectral region of 400–1000 nm. Transient gain and absorption from the excited state were observed for the first time around 650 and 700 nm, respectively, just after 300 fs pulse excitation. Bathorhodopsin was formed within 400 fs from the excited state; therefore, the cis-trans isomerization completes within 400 fs. The first intermediate "primerhodopsin" found in our previous paper is most likely "quasi-thermal" bathorhodopsin, in which the local thermalization of the chromophore is achieved. Then cooling down of the chromophore to the surrounding protein temperature takes place with 20 ± 10 ps along with blue-shifting of a spectrum of 10 ± 5 nm. In addition to these observations, a prominent gain in the region of > 850 nm was observed and decayed with 2–3 ps in H₂O. A similar time constant was estimated for a partial decay of an induced absorption around 600 nm. This process may be related with two forms of bathorhodopsin reported previously. In this scheme, two forms of bathorhodopsin are formed with time constants of about 400 fs and 2 ps. In the sample in D₂O, time constant of 3–4 ps was obtained for the slower process.     

1H NMR spectra of diastereomeric 1,4-disubstituted 2,3-diphenylbutanes; examples of ABXX′ A′B′ and A2XX′A2′ spin systems

The ¹H NMR spectra of the meso- and (±)-forms of some 1,4-disubstituted 2,3-diphenylbutanes were measured at 400 MHz. The spectral parameters were determined by iterative computer analysis, treating the protons as ABXX′A′B′ or (in some cases) A₂XX′A₂′ systems.     

SPECTRAL FORMS AND ORIENTATION OF BACTERIOCHLOROPHYLLS c AND α IN CHLOROSOMES OF THE GREEN PHOTOSYNTHETIC BACTERIUM Chloroflexus aurantiacus

Spectral forms of bacteriochlorophyll (Bchl) in chlorosomes were analyzed by linear dichroism, circular dichroism (CD), and deconvolution of these spectra. Isolated chlorosomes were embedded in polyacrylamide gels and compressed unidirectionally (along the x-axis) while allowing the gel to stretch in another direction (along the z-axis). The chlorosomes were aligned three-dimensionally due to their flat oblong shape; the longest axis was presumed to parallel the z-axis, its shortest axis was presumed to parallel the x-axis, and the intermediate-length axis was presumed to parallel the y-axis. Degrees of polarization (A_I? A₁)/(A_I+ A₁) of Bchl c and a measured from the y-axis with linearly polarized light were significantly different from those measured from the x-axis. Deconvolution of spectra into components revealed the presence of two major forms of Bchl c with peaks at 744 nm and 727 nm. The degrees of polarization of the 744 and 727 nm spectral forms were 0.76 and 0.59 from the y-axis and 0.48 and 0.39 from the x-axis, respectively. The degrees of polarization of Bchl a794 were –0.21 from the y-axis and 0.12 from the x-axis. These values indicate that the direction of the Q_y transition moment of Bchl c744 is almost completely parallel to the longest axis of chlorosomes and that of Bchl c727 is also nearly, but slightly less so, parallel to the longest axis of the chlorosomes. The Q_y transition moment of the baseplate Bchl a peak at 794 nm is nearly perpendicular to the longest axis and parallel to the shortest axis: that is, it is perpendicular to the associated membrane plane in the cell. These alignments of Bchl transition moments in chlorosomes were lost after suspending the chlorosomes in a solution saturated with 1-hexanol accompanying a shift in the peak position from 742 nm to 670 nm. The alignment recovered after the hexanol concentration was decreased. The presence of two major spectral forms of Bchl c was supported by the deconvolution of CD spectra and absorption spectra.