Deprotonated cytosine anions: a theoretical prediction of photoelectron spectra

Predictions on the photoelectron spectra of deprotonated cytosine anions (cytosinate, Cye(-)) have been made with ab initio electron propagator methods. Two imino-oxo forms are most stable, but four other isomers have energies within 10 kcal/mol. The first vertical electron detachment energies (VEDEs) for the three most stable Cye(-) isomers are approximately 3.4 eV. Imino-oxy VEDEs are about 0.3 eV smaller. For each anion, the lowest VEDE corresponds to a pi Dyson orbital. The order of higher final states is changed when relaxation and correlation effects are considered. Considerable mixing between lone-pair and bonding lobes occurs in the sigma Dyson orbitals.     

Nonconventional hydrogen bonds: a theoretical study of [uracil-L](-) (L = F, Cl, Br, I, Al, Ga, In) complexes

The interaction of L (-) (L = F, Cl, Br, I, Al, Ga and In) with a uracil molecule has been studied with B3LYP density-functional geometry optimizations and electron-propagator calculations of vertical electron detachment energies. Because the extra electron of the anion is localized on L, nonconventional hydrogen bonds are formed. The interactions of halide anions with uracil are similar to the interactions of uracil with Cu (-), Ag (-) and Au (-) that were reported previously. Whereas halide and transition metal anion complexes with uracils are singlets, the anions formed with Al, Ga and In are triplets. Vertical electron detachment energies (VEDEs) are higher for (uracil-L) (-) than the analogous values for isolated L (-) anions. Predicted VEDEs are assigned to Dyson orbitals that may be localized on L (-) or uracil.     

Pseudopotential and electron propagator methods for the calculation of the photoelectron spectra of anionic silicon clusters: predictions on Si10-

Photoelectron spectra of anionic clusters of silicon require reliable theoretical calculations for their assignment and interpretation. Electron propagator calculations in the outer valence Green's-function approximation with two well-characterized, all-electron basis sets on vertical electron detachment energies (VEDEs) of anions are compared to similar calculations that employ Stuttgart pseudopotentials. Tests on Si(n) (-) clusters with n=3-7 exhibit an encouraging agreement between the all-electron and pseudopotentials results and between electron propagator predictions and experiments and values obtained from coupled-cluster calculations. To illustrate the capabilities of the new approach based on a Si pseudopotential and electron propagator methods, VEDE calculations on Si(10) (-) are presented.     

OH(3) (-) and O(2)H(5) (-) double Rydberg anions: predictions and comparisons with NH(4) (-) and N(2)H(7) (-)

A low barrier in the reaction pathway between the double Rydberg isomer of OH(3) (-) and a hydride-water complex indicates that the former species is more difficult to isolate and characterize through anion photoelectron spectroscopy than the well known double Rydberg anion (DRA), tetrahedral NH(4) (-). Electron propagator calculations of vertical electron detachment energies (VEDEs) and isosurface plots of the electron localization function disclose that the transition state's electronic structure more closely resembles that of the DRA than that of the hydride-water complex. Possible stabilization of the OH(3) (-) DRA through hydrogen bonding or ion-dipole interactions is examined through calculations on O(2)H(5) (-) species. Three O(2)H(5) (-) minima with H(-)(H(2)O)(2), hydrogen-bridged, and DRA-molecule structures resemble previously discovered N(2)H(7) (-) species and have well separated VEDEs that may be observable in anion photoelectron spectra.     

Comparative theoretical study of the electron affinities of the alkaline‐earth clusters: Ben,Mgn, and Can (n = 2, 3)

If in atoms only one type of the electron affinity (EA) can be defined, in molecules there are three types of EAs: the vertical electron affinity (VEA), adiabatic electron affinity (AEA), and vertical electron detachment energy (VEDE). These three types of EAs for beryllium, magnesium, and calcium dimers and trimers are calculated at the all‐electron MP4(SDTQ) level employing the Dunning‐type basis sets. All obtained EAs satisfy the following inequality VEDE > AEA > VEA and are quite large to be observed in experiment, especially in the trimer case: VEDE (Be) = 1.63 eV, VEDE (Mg) = 0.72 eV, and VEDE (Ca) = 0.95 eV. The decomposition of VEDE into physical components (Koopmans, relaxation, and correlation) and the atomic orbital population analysis (at the NBO level) are used to elucidate the nature of the outer electron binding in studied anions. © 2009 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

Non-conventional hydrogen bonds: pterins-metal anions

In this paper, we present an analysis of the interaction of metal ions (Cu, Ag and Au) with three different pterins (pterin, isoxanthopterin and sepiapterin) to provide insights concerning the formation of conventional and non-conventional H bonds. Density functional theory calculations were performed in order to reveal the optimized structures of pterin molecules, dimers and tetramers compounds, both with and without metal anions (M). The interaction with small metal clusters (M(3)) is also considered. The formation of different systems is characterized in terms of the structural parameters and hydrogen binding energies (HBE). The HBE values for pterin-M systems presented in this study lie between 22 and 60 kcal mol(-1) and can therefore be classified as strong conventional and strong non-conventional hydrogen bonds. The HBE with small metal clusters (pterin-M(3)) are smaller than the HBE with metal atoms. Vertical electron detachment energies (VEDEs) are also reported in order to analyze the influence of the hydrogen bond on electronic properties. A direct correlation between VEDEs and HBE was found for pterin-M and pterin-M(3) complexes; i.e. as the VEDEs increase, the HBE also augment. The only exception is with Ag(3). The main conclusion derived from this study is that the strong non-conventional hydrogen bonds formed between pterins, dimers and tetramers do not affect the formation of conventional hydrogen bonds between pterins but they do influence the VEDEs.     

Tautomeric forms of azolide anions: vertical electron detachment energies and Dyson orbitals

Several decouplings of the electron propagator, including the relatively new P3+ approximation for the self-energy, have been used to calculate vertical electron detachment energies of tautomeric forms of closed-shell, pentagonal, aromatic anions in which ring carbons without bonds to hydrogens appear. This study extends previous work in which the most stable forms of anionic, five-member rings with one to five nitrogens were considered. Whereas the lowest electron detachment energies sometimes are assigned by Koopmans's theorem results to pi orbital vacancies, electron propagator calculations always obtain sigma orbital vacancies for the ground states of the doublet radicals. Higher electron detachment energies that correspond to excited doublets with pi vacancies also are presented. The predicted transition energies are in good agreement with low-intensity peaks in recent anion photoelectron spectra that have been assigned to less stable, tautomeric forms of these anions.     

Vibrational spectroscopy of nitroalkane chains using electron autodetachment and ar predissociation

If the binding energy of an excess electron is lower than some of the vibrational levels of its host anion, vibrational excitation can lead to autodetachment. We use excitation of CH stretching modes in nitroalkane anions (2700-3000 cm(-1)), where the excess electron is localized predominantly on the NO2 group. We present data on nitroalkane anions of various chain lengths, showing that this technique is a valid approach to the vibrational spectroscopy of such systems extending to nitroalkane anions at least the size of nitropentane. We compare spectra taken by using vibrational autodetachment with spectra obtained by monitoring Ar evaporation from Ar solvated nitroalkane anions. The spectra of nitromethane and nitroethane are assigned on the basis of ab initio calculations with a detailed analysis of Fermi resonances of CH stretching fundamentals with overtones and combination bands of HCH bending modes.     

Electron attachment to solvated dGpdG: effects of stacking on base-centered and phosphate-centered valence-bound radical anions

To explore the nature of electron attachment to guanine-centered DNA single strands in the presence of a polarizable medium, a theoretical investigation of the DNA oligomer dinucleoside phosphate deoxyguanylyl-3',5'-deoxyguanosine (dGpdG) was performed by using density functional theory. Four different electron-distribution patterns for the radical anions of dGpdG in aqueous solution have been located as local minima on the potential energy surface. The excess electron is found to reside on the proton of the phosphate group (dGp(H-)dG), or on the phosphate group (dGp(.-)dG), or on the nucleobase at the 5' position (dG(.-)pdG), or on the nucleobase at the 3' position (dGpdG(.-)), respectively. These four radical anions are all expected to be electronically viable species under the influence of the polarizable medium. The predicted energetics of the radical anions follows the order dGp(.-)dG>dG(.-)pdG>dGpdG(.-)>dGp(H-)dG. The base-base stacking pattern in DNA single strands seems unaffected by electron attachment. On the contrary, intrastrand H-bonding is greatly influenced by electron attachment, especially in the formation of base-centered radical anions. The intrastrand H-bonding patterns revealed in this study also suggest that intrastrand proton transfer might be possible between successive guanines due to electron attachment to DNA single strands.     

Dissociative electron attachment to Pt(PF3)4--a precursor for focused electron beam induced processing (FEBIP)

Experimental absolute cross sections for dissociative electron attachment (DEA) to Pt(PF(3))(4) are presented. Fragment anions resulting from the loss of one, two, three and four PF(3) ligands as well as the Pt(PF(3))F(-) and the F(-) ions were observed. The parent anion Pt(PF(3)) is too short-lived to be detected. The dominant process is loss of one ligand, with a very large cross section of 20?000 pm(2); the other processes are about 200× weaker, with cross sections around 100 pm(2), the naked Pt(-) anion is formed with a cross section of only 1.8 pm(2). The resonances responsible for the DEA bands were assigned based on comparison with electron energy-loss spectra and spectra of vibrational excitation by electron impact. Bands around 0.5 eV and 2 eV were assigned to shape resonances with single occupation of virtual orbitals. A DEA band at 5.9 eV was assigned to a core-excited resonance corresponding to an electron very weakly bound to the lowest excited state. An F(-) band at 12.1 eV is assigned to a core excited resonance with a vacancy in an orbital corresponding to the 2nd ionization energy of the PF(3) ligand. Implications of these findings for FEBIP are discussed.     

Empty-level structure and reactive species produced by dissociative electron attachment to tert-butyl peroxybenzoate

The energy and nature of the gas-phase temporary anion states of tert-butylperoxybenzoate in the 0-6 eV energy range are determined for the first time by means of electron transmission spectroscopy (ETS) and appropriate theoretical calculations. The first anion state, associated with electron capture into a delocalized π* MO with mainly ring and carbonyl character, is found to lie close to zero energy, i.e., sizably more stable (about 2 eV) than the ground (σ*) anion state of saturated peroxides. Dissociative decay channels of the unstable parent molecular anions are detected with dissociative attachment spectroscopy (DEAS), as a function of the incident electron energy, in the 0-14 eV energy range. A large DEA cross-section, with maxima at zero energy, 0.7 and 1.3 eV, is found for production of the (m/e = 121) PhCOO(-) anion fragment, together with the corresponding tert-butoxy neutral radical, following cleavage of the O-O bond. Although with much smaller intensities, a variety of other negative currents are observed and assigned to the corresponding anion fragments with the support of density functional theory calculations.     

Photoelectron imaging spectroscopy of nitroethane anions

We present low-energy velocity map photoelectron imaging results for bare and Ar solvated nitroethane anions. We report an improved value for the adiabatic electron affinity of nitroethane of (191 ± 6) meV which is used to obtain a C-NO(2) bond dissociation energy of (0.589 ± 0.019) eV in nitroethane anion. We assign a weak feature at (27 ± 5) meV electron binding energy to the dipole-bound anion state of nitroethane. Photoelectron angular distributions exhibit increasing anisotropy with increasing kinetic energies. The main contributions to the photoelectron spectrum of nitroethane anion can be assigned to the vibrational modes of the nitro group. Transitions involving torsional motion around the CN bond axis lead to strong spectral congestion. Interpretation of the photoelectron spectrum is assisted by ab initio calculations and Franck-Condon simulations.     

Vibronic structure in C2H and C2D from anion slow electron velocity-map imaging spectroscopy

The C2H and C2D radicals are investigated by slow electron velocity-map imaging (SEVI) of the corresponding anions. This technique offers considerably higher resolution (<0.5 meV) than photoelectron spectroscopy. As a result, SEVI spectra of the two isotopomers yield improved electron affinities and reveal many new structures that are particularly sensitive to vibronic coupling between the ground 2Sigma+ and low-lying excited 2Pi states. These structures, which encompass more than 5000 cm(-1) of internal excitation, are assigned with the aid of previous experimental and theoretical work. We also show that SEVI can be applied to photodetachment transitions resulting in ejection of an electron with orbital angular momentum l=1, a p wave, in contrast to anion zero-electron kinetic energy spectroscopy which is restricted to s-wave detachment.     

Electron photoemission from charged films: absolute cross section for trapping 0-5 eV electrons in condensed CO2

The electron trapping or attachment cross section of carbon dioxide (CO2) condensed as thin films on a spacer of Ar is obtained using a simple model for electron trapping in a molecular film and then charge releasing from the same film by photon absorption. The measurements are presented for different electron exposures and impact energies, film thicknesses, and probing photon energies. The cross section for trapping an electron of incident energy between 0 and 5 eV reveals three different attachment processes characterized by a maximum at about 0.75 eV, a structured feature around 2.25 eV, and a shoulder around 3.75 eV. From the measurement of their dependence with the probing photon energy, the two lowest processes produce traps having a vertical electron binding energy of approximately 3.5 eV, whereas the highest one yields a slightly higher value of approximately 3.7 eV. The 0.75 eV maximum corresponds to the formation of vibrational Feshbach resonances in (CO2)n- anion clusters. The 2.25 eV feature is attributed to the formation of a vibrationally excited 2Piu anion in (CO2)n- clusters, followed by fast decay into its vibrational ground state without undergoing autodetachment. Finally, 3.75 eV shoulder is assigned to the well-known dissociative electron attachment process from 2Piu anion state producing the O- anion in the gas phase and the (CO2)nO- anions in clusters.     

A combined gas-phase photoelectron spectroscopic and theoretical study of Zeise's anion and its bromine and iodine analogues

Shining light on Zeise: In a study of Zeise's anion, [PtCl(3)(C(2)H(4))](-), and its bromine and iodine analogues, electronic structure information for each species, derived from spectral features, is assigned through calculations at the coupled cluster level of theory. The calculations indicate that the electron binding energies decrease with halogen size and that there is a synergistic η(2) interaction between C(2)H(4) and the PtX(3)(-) anions.     

Dipole-bound anions of beta-alanine: canonical and zwitterionic conformers

The remarkable stabilities of the dipole-bound anions of the canonical and zwitterionic conformers of beta-alanine are predicted at the high level of theories, in which the former is the global minimum and the latter, the anti zwitterionic anion, is the local minimum. In contrast to the dipole-bound anions of glycine, the gauche zwitterionic anion of beta-alanine is an unstable conformer. The vertical electron detachment energies for the canonical and anti zwitterionic anions are 58 and 1145 meV, respectively. The photodetachment electron spectrum of the canonical anion is theoretically simulated on the basis of the Franck-Condon factor calculations.     

Electron attachment-induced DNA single strand breaks: C3'-O3' sigma-bond breaking of pyrimidine nucleotides predominates

A detailed understanding of DNA strand breaks induced by low energy electrons (LEE) is of crucial importance for the advancement of many areas of molecular biology and medicine. To elucidate the mechanism of DNA strand breaks by LEEs, theoretical investigations of the electron attachment-induced C3'-O3' sigma-bond breaking of the pyrimidine nucleotides have been performed. Calculations of 2'-deoxycytidine-3'-monophosphate and 2'-deoxythymidine-3'-monophosphate in their protonated form (denoted as 3'-dCMPH and 3'-dTMPH) have been carried out with the reliably calibrated B3LYP/DZP++ theoretical approach. Our results demonstrate that the transfer of the negative charge from the pi*-orbital of the radical anion of pyrimidines to the DNA backbone does not pass through the N1-glycosidic bond. Instead, the migration of the excessive negative charge through the atomic orbital overlap between the C6 of pyrimidine and the C3' of ribose most likely represents a pathway that subsequently leads to the strand breaks. The proposed mechanism of the LEE-induced single strand breaks in DNA assumes that the formation of the base-centered radical anions is the first step in this process. Subsequently, these electronically stable radical anions may undergo either C-O bond breaking or N-glycosidic bond rupture. The present investigation of 3'-dCMPH and 3'-dTMPH yields an energy barrier of 6.2-7.1 kcal/mol for the C3'-O3' sigma-bond cleavage. This is much lower than the energy barriers required for the C5'-O5' sigma-bond and the N1-glycosidic bond break. Therefore, we conclude that the C3'-O3' sigma-bond rupture dominates the LEE-induced single strand breaks of DNA.     

Colourimetric Carboxylate Anion Sensors Derived from Viologen‐Based Receptors

A series of tri‐ and tetrapodal viologen‐based anion receptors showing a colourimetric response to carboxylates, such as acetate, have been synthesised. Alteration of the anion binding sites allows for binding site competition within a receptor. This results in a delayed colourimetric response for urea derivatives compared with pyridinium systems because the anions are initially bound to the periphery of the receptor, away from the viologen unit. DFT calculations and experimental measurements allow the colour change to be assigned to an anion–receptor charge‐transfer process, facilitated by the exceptionally low reduction potential of the cationic host compounds. Evidence for electron transfer to give the viologen radical cation is also seen in some cases.     

Coexistence of two different anion states in polyacene nanocluster anions

Two types of anion states are shown to coexist in nanometer-scale polyacene cluster anions. Naphthalene and anthracene nanoclusters having a single excess electron were produced in the gas-phase. Photoelectron spectra of size-selected cluster anions containing 2 to 100 molecules revealed that rigid "crystal-like" cluster anions emerge, greater than approximately 2 nanometers in size, and coexist with the "disordered" cluster anion in which the surrounding neutral molecules are reorganizing around the charge core. These two anion states appear to be correlated to negative polaronic states formed in the corresponding crystals.     

Temporary anion states of pyrimidine and halopyrimidines

The empty-level electronic structures of pyrimidine and its 2-chloro, 2-bromo, and 5-bromo derivatives have been studied with electron transmission spectroscopy (ETS) and dissociative electron attachment spectroscopy (DEAS) in the 0-5 eV energy range. The spectral features were assigned to the corresponding anion states with the support of theoretical calculations at the ab initio and density functional theory levels. The empty orbital energies obtained by simple Koopmans' theorem calculations, scaled with empirical equations, quantitatively reproduced the energies of vertical electron attachment to π* and σ* empty orbitals measured in the ET spectra and predicted vertical electron affinities close to zero for the three halo derivatives. The total anion currents of the halo derivatives, measured at the walls of the collision chamber as a function of the impact electron energy, presented intense maxima below 0.5 eV. The mass-selected spectra showed that, in this energy, range the total anion current is essentially due to halide fragment anions. The DEA cross sections of the bromo derivatives were found to be about six times larger than that of the chloro derivative. The absolute cross sections at incident electron energies close to zero were evaluated to be 10(-16)-10(-15) cm(2).