Time‐dependent density functional theory calculations on the chiroptical properties of rubroflavin: Determination of its absolute configuration by comparison of measured and calculated CD spectra

The absolute configuration of rubroflavin has been determined by comparison of its measured and calculated CD spectra. For this purpose the structures of 30 plausible isomers of the title compound have been optimized with density functional theory (DFT/BP86) using a triple‐zeta valence basis set. The absolute (S) configuration at the ? S(?O)CH₃ group has been assumed in these calculations. One quinoid isomer, which is separated from all other structures by an energy gap of about 4 kcal/mol, was found to be the most stable species and to dominate the CD spectrum. The structure of this isomer has been reoptimized under the influence of a solvent using an electrostatic model (COSMO). Based on the geometries of the most stable isomer obtained in the presence and absence of the solvent the excitation energies and oscillator as well as rotational strengths have then been calculated using time‐dependent DFT (TDDFT/TZVP/BP86). Comparison of the measured CD spectrum with that calculated for the energetically lowest isomer shows that especially the long wavelength parts of the spectra agree fairly well as far as the wavelengths and the signs of the Cotton effects are concerned while the correspondence between calculated and measured intensities is less satisfying. The agreement between the measured and calculated spectrum is better if the geometry optimized under the influence of the solvent is used. A detailed analysis of the spectra led us to the conclusion that the absolute configuration of rubroflavin is (S). These results support earlier assignments based on semiempirical and ab initio studies on a thermal decomposition product of rubroflavin. © 2003 Wiley Periodicals, Inc. Int J Quantum Chem 93: 265–270, 2003     

Photodissociation and collision-induced dissociation of molecular ions from methylphenol and chloromethylphenol

The photodissociation of molecular ions from a series of methylphenols and chloromethylphenols was studied using Fourier transform ion cyclotron resonance mass spectrometry (FTMS). The photodissociation spectra contain both UV and visible absorption maxima. The positions of these bands correlate well with solution electronic absorption spectra and photoelectron spectra, respectively, suggesting that photodissociating populations of the molecular ions have not rearranged. The molecular ion of benzyl alcohol can be readily distinguished from the isomeric 2- and 4-methylphenol ions on the basis of the position and intensity of the photodissociation bands, and the identity of the photoproduct. The p-chlorophenol isomers, 4-chloro-2-methylphenol and 4-chloro-3-methylphenol, cannot be distinguished by their photodissociation spectra. Minor differences exist between these spectra and that of the o-chlorophenol isomer 2-chloro-5-methylphenol, suggesting that the relative positions of the chloro and hydroxy groups may have a greater effect on photodissociation than the position of the methyl group. For comparison, low-energy collision-induced dissociation using FTMS was also performed on the same ions.     

Synthesis, spectroscopic, and electrochemical studies of 1,2-naphthalene-ring-fused tetraazachlorins, -bacteriochlorins, and -isobacteriochlorins: the separation and characterization of structural isomers

1,2-Naphthalene-ring-expanded tetraazachlorins (TACs), tetraazabacteriochlorins (TABCs), and tetraazaisobacteriochlorins (TAiBCs) have been synthesized. Procedures for the synthesis of the starting materials, that is, derivatives of 1,2-naphthalenedicarboxylic acid, have been reinvestigated and improved. Nine possible derivatives, including four, two, and three structural isomers of TACs, TABCs, and TAiBCs, respectively, were separated by using thin-layer chromatography (TLC) or high-performance liquid chromatography (HPLC), and the structure of each isomer was determined by (1)H NMR spectroscopy combined with the NOE technique. The formation ratio of each isomer was rationalized in terms of the intramolecular steric repulsion effect, which was predicted by geometry optimizations at the DFT level. The derived compounds were characterized by using IR, electronic, and magnetic circular dichroism (MCD) spectroscopy, and by electrochemical methods. Frequency calculations at the DFT level correctly reproduced the experimental IR spectra and, in particular, distinguished between the three isomers of the TAiBCs. In the electronic absorption and MCD spectra of the TAC and TABC species, the Q-band splits into two intense components similarly to the 2,3-naphthalene-fused derivatives described in our preceding paper, although no significant spectral differences were observed from species to species. On the other hand, the spectra of the TAiBCs showed moderate differences depending on the structure of the isomer. The spectroscopic properties as well as the electrochemical behavior of these chlorins resemble those of the corresponding benzene-fused derivatives rather than the 2,3-naphthalene-fused derivatives. Molecular-orbital and configuration-interaction calculations within the framework of the ZINDO/S method were helpful in the discussions of the above observations.     

Dipole moments of some substituted acetophenones Influence of ortho substitutents on the position of the acetyl group

The electric dipole moments of a number of substituted acetophenones, with at least one substituent (methyl, halo, nitro or amino) in the ortho position, have been measured in benzene solution and compared with the values calculated for free rotation as well as for s-trans and s-cis orientations of the acetyl group. 2-Methylacetophenones have a greater proportion of the s-cis isomer while 2-haloacetophenones have a greater proportion of the s-trans isomer. With increase in temperature there is an increase in the proportion of the less stable isomer. The observed dipole moment of o-aminoacetophenone indicates that the molecule exists predominantly in the s-cis configuration stabilized by intramolecular hydrogen bonding.     

Synthesis of 4-(5-Nitrophenylfur-2-yl)-1,2,3-thia- and Selenadiazoles

Arylation of 2-acetylfuran with o-, m-, and p-nitrophenyldiazonium salts under the conditions of the Gomberg-Bachmann reaction has afforded the corresponding 5-(nitrophenyl)-2-acetylfurans. Their carbo-ethoxyhydrazones have undergone the cyclization into stable 4-(5-nitrophenylfur-2-yl)-1,2,3-thiadiazoles under the conditions of the Hurd-Mori reaction. Analogous semicarbazones have afforded the corresponding selenadiazoles upon oxidation with selenium dioxide. The analysis of electronic absorption spectra of the obtained hybrid heterocycles has shown that the conjugation of the phenyl and the furan ring in o-nitrophenyl derivatives is distorted due to steric hindrance, whereas the effect of direct polar conjugation leading to strong bathochromic shift of the absorption band has been observed in the case of the p-nitro derivatives. The position and intensity of the bands in the electronic absorption spectra of the studied compounds are determined by electronic as well as steric factors. The difference in the length of conjugation chain determined by the position of the nitro group in the phenyl fragment also contributes to the observed trend. The introduction of selenadiazole fragment instead of thiadiazole one has caused slight bathochromic shift of the band in the electron absorption spectra.

     

The ultraviolet spectra of the chloropyridines and chlorinated pyridines possessing a sulfur (-SR), nitrogen (-NR2), or oxygen (-OR) substituent in either the 2 or 4-position: A convenient method for distinguishing such positional isomers

The ultraviolet spectra for a series of 15 chlorinated pyridines which contain a sulfur, nitrogen or an oxygen substituent at either the 2 or 4-position have been examined. A correlation has been established between the position (2 vs 4) of the S, N, or O substituent on the chlorinated pyridines and their ultraviolet spectra. It was found that the chlorinated pyridines with S, N, or O substitution at the 2-position gave ultraviolet spectra whose longest wavelength absorption maxima were enhanced (moved to a greater wavelength and an increased extinction coefficient) when compared to the spectra of the 4-substituted isomers. The difference is great enough so that an easy identification of positional isomers can be made with a relatively high degree of confidence even when only one positional isomer is available. The ultraviolet spectra of all the chlorinated pyridines has been recorded, and it was observed that the number of chlorine atoms, and not their position, was the more significant factor in determining the overall character of the spectra.     

Observation of methyl iodide clusters in gas phase by infrared cavity ring-down spectroscopy

Infrared spectra of methyl iodide clusters produced in a supersonic jet have been observed in the C–H stretching region by cavity ring-down spectroscopy. The dependence of the spectra on the mixing ratio of CH₃I versus He and on the stagnation pressure has led to a tentative assignment of the absorption peaks to trimer up to pentamer, based on our previous study with matrix isolation technique (Chem. Phys. Lett. 343 (2001) 185). Ab initio calculations at the MP2 level for the trimer and tetramer have shown that two stable isomers exist for the tetramer whereas only one isomer is found to be stable for the trimer. The tentative assignment of the observed spectra has been in qualitative agreement with the results of the calculations. The structure of each isomer and its photochemical relevance are discussed.     

Photoelectron spectra of substituted benzenes

Photoelectron spectra of several substituted dimethylanilines, nitrobenzenes, acetophenones and nitrosobenzenes have been studied with a view to examine the electronic effects of substituents on the various φ and n levels. The results are discussed in the light of molecular orbital calculations and electronic absorption spectra. Correlation of substituent effects on the IE's with π-electron densities and Hammett substituent constants has enabled rationalization of all available data on mono- and disubstituted benzenes. The IE's generally increase with the electron-withdrawing power of the substituents.     

Determination of the rα structure corrected for correlated deformation and of the bond contributions to the degree of order of 1,3-butadiene by NMR of the partially oriented molecule

Protons with¹³C-satellite spectra from 1,3-butadiene dissolved in four different liquid-crystal solvents have been analyzed. The observed direct couplings, corrected for harmonic vibration as well as for correlated deformation, show that the trans isomer is dominant but that there must be a low concentration (2%) of a second rotamer, probably close to cis. The structure of the trans isomer is determined and the bond contributions to the order tensor are measured.     

Crystal structure of inclusion compounds: The complexes of thecis-syn-cis and thecis-anti-cis isomers of dicyclohexano-18-crown-6 with 4-methylbenzenesulfamide

The crystal structure of two complexes of the isomerscis-syn-cis (isomer A) andcis-anti-cis (isomer B) of dicyclohexano-18-crown-6 with 4-methylbenzenesulfamide have been determined by X-ray single crystal diffraction methods. The two structures have been solved by direct methods and refined to agreement values of 0.067 and 0.038 for isomers A and B respectively. The first isomer forms an inclusion compound with a host/guest ratio of 1 : I; the second one of I:2. The amino groups of the guest molecules are connected by N-H...O hydrogen bonds with oxygen atoms of the polyether molecules. The methyl groups of 4-methylbenzenesulfamide do not form hydrogen bonds.[/p]The host-guest interactions in the molecular complexes, the reciprocal influence of the two molecules on their conformation and the intermolecular contacts between the molecules in the crystal are discussed.     

An Unexpected and Green Synthetic Protocol for Ethyl 1‐Aroyl/Aroylmethyl‐5‐methyl‐3‐methylthiopyrazole‐4‐carboxylates: High Regioselectivity in Alkylation and Acylation Reactions between N‐1 and N‐2 of a Pyrazole Ring

Two series, totaling twelve, of new compounds, ethyl 1‐aroyl/(aroylmethyl)‐5‐methyl‐3‐methylthiopyrazole‐4‐carboxylates ( 5 / 6 ), have been synthesized via highly regioselectively acylation and alkylation reactions of ethyl 3‐methyl‐5‐methylthio‐1 H‐pyrazole‐4‐carboxylate ( 2a ) with aroyl chloride ( 3 ) and eco‐friendly reagents alpha‐tosyloxysubstituted acetophenones ( 4 ), respectively, and a green protocol has been developed. The acylation reactions were carried out under ultrasound irradiation, and the alkylation reactions were under microwave irradiation and ultrasound irradiation, respectively. Conventional reaction conditions, as well as the use of alpha‐bromosubstituted acetophenone ( 4 ′) have also been applied in the synthesis of some randomly selected compounds in both series and have generated identical compounds correspondingly. Unexpected structures of compounds were unambiguously determined by X‐ray crystallographic analysis.     

Applications of 1,4-addition of grignard reagents to α,β-unsaturated acid derivatives. III—configuration studies of α,β-diaryl-α,β-dialkylpropionitriles

The configuration of twenty-four different α,β-diaryl-α,β-dialkylpropionitriles has been determined using nuclear magnetic resonance spectra. The erythro form showed greater deshielding of the methine hydrogen and alkyl groups in its spectra than the corresponding threo isomer. The former, however, showed less deshielding of the aryl groups than the threo isomer. Infrared spectra were not suitable for assignments of configuration.     

Characterization of diene polymers. I. Infrared and NMR studies: Nonadditive behavior of characteristic infrared bands

Extinction coefficients of the characteristic infrared bands due to isomeric structural units were measured for polybutadiene and polyisoprene in CS₂ or CCl₄ solutions and were compared with the isomer composition determined by NMR. The NMR signal assignments were made on the basis of the spectra of deutero derivatives of the polymers. In the case of polyisoprene, linear relations were obtained between the extinction coefficients and the isomer contents determined by NMR for the absorption bands at 1385 cm^?1 (characteristic of trans-1,4 units), 1376 cm^?1 (cis-1,4 units), and 889 cm^?1 (3,4 units). However, for the absorption bands at 840 cm^?1 (characteristic of cis-1,4 and trans-1,4 units), isomerized polyisoprenes did not give such a linear relationship. In polybutadiene, the extinction coefficient for the atactic 1,2 units was found to be lower than that of the syndiotactic 1,2 unit. These experimental facts lead to the conclusion that additivity of the extinction coefficients does not always hold for diene polymers. The deviation from the linear relation may be associated with regular sequences of one isomeric conformation in the chain.     

Triplet-state energies and substituent effects of excited aroyl compounds in the gas phase

Triplet-state energy values obtained from the gas phase are still scarce. In this study, the triplet-state energies of 58 aroyl compounds, introduced as gas chromatographic peaks at atmospheric pressure and typically 473 K, have been determined from the 0-0 bands of their n --> pi* type phosphorescence spectra in excited nitrogen. Correlations of those gas-phase triplet-state energies with Hammett constants could be observed for substituted acetophenones, benzaldehydes and benzophenones.     

The absorption spectrum and dissociation constants of 4-hydroxybenzthiazole

The absorption spectra of 4-hydroxybenzthiazole and the parent compound, benzthiazole, have been determined in acidic, basic and neutral solutions, and compared with the corresponding absorption spectra of 8-hydroxyquinoline and quinoline. The dissociation constants of 4-hydroxybenzthiazole obtained by a spectrophotometric method as well as a potentiometric method, show that it is a stronger acid and a weaker base than 8-hydroxyquinoline.     

Synthesis of Sulfamylchalcones

Thirteen new 4-sulfamyl chalcones have been prepared by the condensation of substituted acetophenones with p-sulfamyl- or N-substituted sulfamylbenzaldiacetates.     

INDO/SCF-CI calculations and structural spectroscopic studies of some complexes of 4-hydroxyacetanilide

The electronic energies among different possible structures of 4-hydroxyacetanilide (paracetamol) (PA) molecule, were calculated using INDO method and it has been concluded that its structure has C(s) point group symmetry of the cis-form. The ionization potential, electron affinity, dipole moment and binding energy have been calculated. The calculated electronic transitions of the cis-form of PA using SCF-CI method have good coincidence with the electronic absorption spectrum. The temperature effect on the electronic spectrum of PA confirms the presence of one conformer only. The electronic spectra of PA compound were studied in different polar- and non-polar solvents and the hydrogen bonding as well as the orientation energies of the polar solvents were determined from the mixed solvents studies. Complexes of PA with various metal ions such as, Cu(II), Zn(II) or Fe(II) ions of ratio 2:1, respectively, have been prepared and their structure has been confirmed by elemental analysis, atomic absorption spectra, IR spectra and (1)H NMR spectra and finally it can be concluded that the structure of the complexes has C2h point group symmetry in which two PA molecules are chelated to any one of the metal ions, Cu(II), Zn(II) and Fe(II) ions.     

Absorption UV spectroscopy and electronic structure of ionic and tautomeric forms of hydroxy and methoxy derivatives of cytosine and adenine,and of some 5-substituted analogs of pyrimidines

The individual absorption spectra of various ionic and tautomeric species of some derivatives of nucleic-acid components have been determined by computer handling of the summary spectra of these compounds measured at different pH values. These individual spectra have been decomposed into separate bands represented by log-normal curves and corresponding to different electronic transitions. Using the parameter system calculated earlier for the molecules of the vitamin B₆ family, the calculation of the electronic spectra and electronic structure of various ionic and tautomeric species of the molecules studied have been carried out in the π-electron approximation. These properties have also been calculated by the all-valence electronic method CNDOS . The calculated results correlate well with both approximations and with our experimental spectral data. The localization of the molecular electronic excitation studied on the transition to the S₁ and T₁ states is considered in connection with the reactivity in these states.     

Density functional theory investigation of novel Eu(III) complexes with asymmetric bis(phosphine) oxides

Recently, we have developed novel Eu(III) complexes with three beta-diketonates and one asymmetric bis(phosphine) oxide whose light emission intensity is drastically increased. In this paper, one of these complexes is investigated by the density functional theory calculation. Sixteen isomers of this complex have been considered. The ratio of the existence for the most stable isomer (B1_1a) is found to be about 51%, and the sum of the ratio of the existence for the six most stable isomers (B1_1a, B1_3a, B1_8a, B1_2a, B1_1b, and B1_5a) is about 100%, assuming the Boltzmann distribution (T = 300 K). The coordination structures of the six most stable isomers in the ground states are similar, and we can expect asymmetric ligand fields for them, favorable for the efficient light emission. Vertical excitation energies and oscillator strengths for each isomer have been obtained by the time-dependent density functional theory. With the red-shift of the wavelength and the interpolation by Gaussian convolution, both the calculated absorption spectra for the most stable isomer B1_1a and the calculated absorption spectra for the ensemble average of the isomers are found to be similar to the experimental fluorescence excitation spectra. The efficiency of energy transfer from the triplet excited state to the Eu(III) ion is considered by calculating DeltaEET (difference between the adiabatic excitation energy of the complex for the lowest triplet state and the emission energy of the Eu(III) ion for 5D0 to 7F2). The characters for the lowest triplet states for the isomers are investigated by the spin density distributions of the triplet states.     

The ligand-field spectrum of Fe3+ in garnets

The ligand-field spectra of garnets bearing Fe³⁺ exclusively at the octahedral as well as at the octahedral and tetrahedral sites have been studied at energies between 8000 and 30 000 cm^?1. The absorption bands up to 28 000 cm^?1 have been assigned by comparison of experimental and calculated transition energies obtained by a complete solution of the d⁵ energy matrices. The Racah parameters of Fe³⁺ in both positions have been reinterpreted using a constant $\text{C}\text{B}$ ratio evaluated from the gaseous Fe³⁺ ion. It was found that the octahedral B parameters are always larger than the tetrahedral ones. The results are consistent with isomer shifts of ⁵⁷Fe and the observed structural features in oxide garnets.