ADENYLATE KINASE BOUND TO THE CHROMATOPHORE MEMBRANES OF Rhodobactor spheroides G1C

Transformation of adenylates (AMP, ADP and ATP) by washed chromatophore membranes of Rhodobactor spheroides G1C in the dark and in the light indicated the functions of ATPase (ADP + Pi in equilibrium ATP) and of an adenylate kinase (2ADP in equilibrium AMP + ATP). The activity of adenylate kinase of the chromatophores was not inhibited by AP5A, and persisted even after sonication in the presence of EDTA or CaCl2; the results suggested the presence of an adenylate kinase bound to the chromatophore membrane. In search of the enzyme, the supernatant after sonication of the chromatophores in the presence of EDTA was subjected to a molecular sieve and then to ion-exchange HPLC; a fraction with high specific adenylate kinase activity, containing a very sharp peak at 55 kDa, was isolated. Preliminary characterization indicated that it is different from the well-documented water-soluble 33 kDa adenylate kinase.     

Density functional calculations of ATP systems. 1. Crystalline ATP hydrates and related molecules

Adenosine 5'-triphosphate (ATP) is an essential energy carrier in mammalian and other cells, and its hydrolysis to the diphosphate (ADP) in the presence of metal cations (e.g., Mg(2+) or Ca(2+)) is one of the most prevalent biochemical reactions. We describe here density functional (DF) calculations on closely related systems and compare the results with other calculations and available experimental data: Na(H2O)n +, Mg(H2O)n 2+, and Ca(H2O)n 2+ clusters (n = 1, 4-7), the crystalline pyrophosphates Mg(2)P(2)O(7).6H2O and alpha-CaNa(2)P(2)O(7).4H2O, and crystalline Na(2)ATP.3H2O. The last of these comprises asymmetric units of ATP dimers (monomers A and B) in a double-protonated state H(2)(ATP)(2-). The calculated structures agree well with available measurements and provide additional information, including the location of the H atoms. Analysis of the dipole moments of individual ATP monomers and their dimers shows that the crystal comprises blocks of opposing dipoles. Replacing one Na+ ion with Mg2+ or Ca2+ results in a significant elongation of the terminal bridging P-O bond. The calculations provide benchmarks for the use of DF methods in ATP systems and are used in the companion paper to study the hydrolysis of ATP at the active site of the protein actin.     

Exploring sites on mitochondrial ATPase for catalysis, regulation, and inhibition.

Evidence is presented that mitochondrial ATPase has two types of sites that bind adenine nucleotides. The catalytic site, C, binds the substrates ATP, GTP, or ITP and the inhibitor guanylyl imidodiphosphate (GMP-PNP). A second type of site, R, binds ATP, ADP, adenylyl imidodiphosphate (AMP-PNP), and the chromium complexes of ATP or ADP. All of these substances binding to the R site inhibit the hydrolysis of ATP in a competitive manner; their inhibition of hydrolysis of ITP and GTP is noncompetitive. GMP-PNP inhibits oxidative phosphorylation in submitochondrial particles but AMP-PNP does not. The localization on mitochondrial membranes of sites for the binding of various antibiotics that inhibit oxidative phosphorylation is discussed.     

Haematoporphyrin derivative (Photofrin II) photosensitization of isolated mitochondria: inhibition of ADP/ATP translocator

To gain further insight into the mechanism by which irradiation of mitochondria in the presence of haematoporphyrin derivative (Photofrin II) (PF II) causes impairment of mitochondrial oxidative phosphorylation, the rate of ADP/ATP exchange via the ADP/ATP translocator was measured fluorometrically is isolated rat liver mitochondria. In accord with noncompetitive inhibition, PF II photosensitization decreases the maximum rate of exchange Vmax (20.8 and 9.6 nmol ATP effluxed min-1 x mg protein in the control and after 2 min irradiation, respectively) without changing the ADP affinity for the carrier (Km = 5 microM in both cases). Comparison of the rate of oxygen uptake by mitochondria stimulated by either ADP or by the uncoupler carbonyl cyanide 4-(trifluoromethoxy)phenylhydrazone (FCCP) confirms that the adenine nucleotide carrier is a major target of photodynamic action which causes oxidative phosphorylation impairment.     

Interaction of homogeneous mitochondrial ATPase from rat liver with adenine nucleotides and inorganic phosphate.

Mitochondrial ATPase from rat liver mitochondria contains multiple nucleotide binding sites. At low concentrations ADP binds with high affinity (1 mole/mole ATPase, KD = 1-2 muM). At high concentrations, ADP inhibits ATP hydrolysis presumably by competing with ATP for the active site (KI = 240-300 muM). As isolated, mitochondrial ATPase contains between 0.6 and 2.5 moles ATP/mole ATPase. This "tightly bound" ATP can be removed by repeated precipitations with ammonium sulfate without altering hydrolytic activity of the enzyme. However, the ATP-depleted enzyme must be redissolved in high concentrations of phosphate to retain activity. AMP-PNP (adenylyl imidodiphosphate) replaces tightly bound ATP removed from the enzyme and inhibits ATP hydrolysis. AMP-PNP has little effect on high affinity binding of ADP. Kinetics studies of ATP hydrolysis reveal hyperbolic velocity vs. ATP plots, provided assays are done in bicarbonate buffer or buffers containing high concentrations of phosphate. Taken together, these studies indicate that sites on the enzyme not directly associated with ATP hydrolysis bind ATP or ADP, and that in the absence of bound nucleotide, Pi can maintain the active form of the enzyme.     

Shuttles for translocation of NADH in isolated liver cells from fed rats during oxidation of xylitol.

Translocation of xylitol-derived NADH via malate-aspartate and alpha-glycerophosphate shuttles was studied in liver cells isolated from fed rats. In bicarbonate medium amino-oxyacetate, rotenone and antimycin A, were equally efficient in depressing the xylitol removal. Incubation of cells in nonbicarbonate medium did not affect the rate of xylitol removal. In this medium amino-oxyacetate and antimycin A, but not rotenone, inhibited xylitol removal. Xylitol inhibited the lactate accumulation found when the cells were incubated without any exogenous substrates. Glucose was the main end product of xylitol oxidation. In nonbicarbonate medium ketogenesis was high, whereas in bicarbonate medium a low rate of ketone body formation was found. Xylitol had no effect on the rate of ketone body formation in either medium tested. Xylitol markedly decreased the ATP and Pi contents of the cells, but no change in the ATP/ADP x Pi ratio or the rate of oxygen consumption was found. The results suggest that NADH formed during xylitol oxidation is translocated to the mitochondria mainly through the malate-aspartate shuttle and only when this shuttle is inhibited does the alpha-glycerophosphate shuttle transfer NADH. Intramitochondrial reactions which form NADH and FADH2 are also suggested to be important regulators of the activity of the alpha-glycerophosphate shuttle.     

钒酸根、金属离子和腺苷二磷酸的相互作用-ATP及Mg^2^+-ATP类似物的形成

用钒-51核磁共振方法研究钒酸根在不同浓度和离子强度下, 在生理pH水溶液中的物种分配。研究结果表明毫摩尔级浓度的钒酸根主要以中心钒原子为四面体构型的单体、二聚、四聚和五聚体存在。通过比较所得的平衡常数说明在离子强度降低时, 钒酸根的聚合度下降。对于钒酸根-ADP体系, 从所显示的核磁谱变化通过计算得到相应的结合平衡常数, 说明主要发生的反应一是形成ATP类似物ADPV(V代表四面体构型的单体钒酸根); 二是在ADP浓度相对高时, 钒酸根与ADP核糖基上2', 3'-颗位羟基同时作用形成2:2配比的、钒原子为五配位三角双锥构型的配合物。在钒酸根-ADP体系中加入Mn^2^+后, ^5^1V NMR的变化说明ATP的类似物ADPV中β-磷酸根和γ-钒酸根可以协同螯合Mn^2^+, 表明形成了Mg^2^+-ATP的类似物Mn^2^+-ADPV。     

布朗动力学理论模拟动态肌动蛋白纤维的增长

肌动蛋白的聚合耦合三磷酸腺酐(ATP)分子水解成二磷酸腺苷(ADP)分子和磷酸(Pi)的释放两个过程. 因此, 肌动蛋白纤维上的原聚体存在三种不同状态, 即分别结合ATP, ADP/Pi和ADP分子. 原聚体的不同状态导致纤维具有不同的空间图谱, 这些状态的空间分布将影响纤维的各种行为. 为此,建立了相应的分子模型,在布朗动力学模拟中实现了遵循时间演化的连续马尔可夫随机过程的解聚和水解反应; 重点阐述了如何实现纤维两端的聚合和解聚达到化学平衡的方法, 并系统研究了纤维在结合ATP分子的肌动蛋白单体溶液中的增长行为.     

Determination of the big head carp myofibrillar (Aristichthys nobilis) adenosine triphosphatase activity by ion chromatography

A method for the determination of adenosine triphosphatase (ATPase) activity of myofibrils of big head carp by using ion chromatography was introduced. Adenosine triphosphate (ATP), adenosine diphosphate (ADP) and orthophosphate (Pi) were separated completely. Recoveries for ATP, ADP and Pi were 98+/-5%, 97+/-4% and 98+/-5%, respectively. Pi liberated from ATP during reaction was monitored by ion chromatography using the suggested method. This method was applicable to the determination of myofibrils ATPase activity for quick quality evaluation of surimi.     

Rotational state-resolved reaction cross section in the reactions of state-selected CH with NO and with O2

A pure and highly intense state-selected pulsed supersonic CH(X (2)Pi) radical beam source was developed by use of the C((1)D)+H(2) reaction with the combination of the state selection and purification by an electrostatic hexapole field. Under the beam-cell condition, the elementary reactions of CH+NO and CH+O(2) were studied by using this state-selected CH beam. NH(A (3)Pi) [and NCO(A (2)Sigma(+))] formations and OH(A (2)Sigma(+)) formation were directly identified in the elementary reaction of CH+NO and CH+O(2), respectively. For the CH+NO reaction, the relative branching ratio sigma(NCO*)sigma(NH) of NCO(A (2)Sigma(+)) formation to NH(A (3)Pi) formation was determined to be 0.35+/-0.15. The state-selected reaction cross sections were determined for each rotational state of CH. In the CH+NO reaction, a remarkable rotational state dependence of the reactive cross section was revealed, while the CH+O(2) reaction showed little rotational state dependence.     

Glucose and fructose hydrates in aqueous solution by IR spectroscopy

In the mid-infrared attenuated total reflectance (MIR-ATR) spectra of aqueous d-glucose and d-fructose solutions, two hydrates were found by factor analysis (FA) for each sugar, d-glucose penta- and dihydrates and d-fructose penta- and monohydrates. We obtained the spectra and abundances for these hydrates as a function of carbohydrate concentrations. The biggest difference in these spectra lies in the CO stretch region. From the distribution of the species, the equilibrium between d-glucose pentahydrate and dihydrate is 3(H2O)2+2(C6H12O(6).2H2O) right arrow over left arrow 2(C6H12O(6).5H2O), with the equilibrium constant KG=(3.2+/-0.6)x10(-5) L3 mol-3. For d-fructose, the equilibrium is between pentahydrate and monohydrate, 2(H2O)2+C6H12O6.H2O right arrow over left arrow C6H12O(6).5H2O, with the equilibrium constant KF=(7.1+/-1.2)x10(-3) L2 mol-2. The four hydrates are present only in aqueous solutions and cannot be obtained in the solid state.     

A selective ATP chromogenic sensor for use in an indicator displacement assay

We synthesized a dinuclear Zn²⁺ complex that is useful as a sensor for ATP in a DMSO/H₂O (1:9, v/v) solvent system via a simple indicator displacement assay (IDA). This chromogenic sensor method can be used to analyze 0.1-2.0 μM of ATP with no interference from ADP or AMP.     

The NaK 1(b) 3Pi(Omega=0) state hyperfine structure and the 1(b) 3Pi(Omega=0) approximately 2(A) 1Sigma+ spin-orbit interaction

We have measured the hyperfine structure of mutually perturbing rovibrational levels of the 1(b) 3Pi0 and 2(A) 1Sigma+ states of the NaK molecule, using the perturbation-facilitated optical-optical double resonance method with copropagating lasers. The unperturbed 1(b) 3Pi0 levels are split into four hyperfine components by the Fermi contact interaction bFIS. Mixing between the 1(b) 3Pi0 and 2(A) 1Sigma+ levels imparts hyperfine structure to the nominally singlet component of the perturbed levels and reduces the hyperfine splitting of the nominally triplet component. Theoretical analysis relates these observations to the hyperfine splitting that each 1(b) 3Pi0 level would have if it were not perturbed by a 2(A) 1Sigma+ level. Using this analysis, we demonstrate that significant hyperfine splitting arises because the 1(b) 3Pi0 state cannot be described as pure Hund's case (a). We determine bF for the 1(b) 3Pi0 levels and also a more accurate value for the magnitude of the singlet-triplet spin-orbit coupling HSO=[1(b) 3Pi0(vb,J)(H(SO))2(A) 1Sigma+(vA,J). Using the known spectroscopic constants of the 1(b) 3Pi state, we obtain bF=0.009 89+/-0.000 27 cm(-1). The values of (H(SO)) are found to be between 2 and 3 cm(-1), depending on vb, vA, and J. Dividing (H(SO)) by calculated vibrational overlap integrals, and taking account of the 1(b) 3Pi(Omega) rotational mixing, we can determine the magnitude of the electronic part H(el) of H(SO). Our results yield (H(el))=(16.33+/-0.15) cm(-1), consistent with our previous determinations using different techniques.     

Fluorescence and metastability of N2O2+: theory and experiment

State-selective mass spectrometry has revealed one conclusive and another probable metastable state of the N2O2+ dication, assigned respectively as 1 3Pi at 38.5 eV and 2 3Pi at 42.5 eV. Photon coincidence experiments confirm that dissociation of 1 3Pi is preceded by a fluorescent transition to X 3Sigma- and also indicate that an identical mechanism occurs for 2 3Pi. Highly correlated MRCI calculations are performed at a range of N2O2+ geometries, from which both N-N and N-O bond stretching curves are generated. Substantial barriers along both coordinates are observed for 1 3Pi and 2 3Pi, although the increasing density of states at higher energy may allow spin-orbit or vibronic predissociation for 2 3Pi. Fragment emissions derived from N2O+ and N2O2+ are analyzed with the aid of glass filters, from which NO (X 2Pi<--A 2Sigma+) and vibrationally excited N2+ (X 2Sigmag+<--B 2Sigmau+) transitions are deduced.     

Product branching between reactive and nonreactive pathways in the collisional quenching of OH A 2Sigma+ radicals by H2

The collisional quenching of OH radicals in their excited A 2Sigma+ electronic state by molecular hydrogen is examined to determine the partitioning between reactive and nonreactive pathways. This is achieved using a pump-probe laser technique to compare the population prepared in the excited OH A 2Sigma+ state with that produced in the OH X 2Pi ground state from nonreactive quenching. Only a small fraction of the products, less than 15%, arise from nonreactive quenching; reactive quenching is the dominant product channel. The branching between the product channels provides a new dynamical signature of the conical intersection region(s) that couple the excited state potential for OH A 2Sigma++H2 with OH X 2Pi+H2 and H2O+H products.     

Electronic quenching of OH A 2Sigma+ radicals in single collision events with molecular hydrogen: quantum state distribution of the OH X 2Pi products

We report a combined experimental and theoretical investigation of the nonreactive quenching channel resulting from electronic quenching of OH A 2Sigma+ by molecular hydrogen. The experiments utilize a pump-probe scheme to determine the OH X 2Pi population distribution following collisional quenching in a pulsed supersonic expansion. The pump laser excites OH A 2Sigma+ (nu'=0, N'=0), which has a significantly reduced fluorescence lifetime due to quenching by H2. The probe laser monitors the OH X 2Pi (nu", N") population via laser-induced fluorescence on various A-X transitions under single collision conditions. The experiments reveal a high degree of rotational excitation (N") of the quenched OH X 2Pi products observed in nu"=1 and 2 as well as a pronounced propensity for quenching into the Pi(A') Lambda-doublet level. These experiments have been supplemented by extensive multireference, configuration-interaction calculations aimed at exploring the topology of the relevant potential energy surfaces. Electronic quenching of OH A 2Sigma+ by H2 proceeds through conical intersections between two potentials of A' reflection symmetry (in planar geometry) that correlate with the electronically excited A 2Sigma+ and ground X 2Pi states of OH. The conical intersections occur in high-symmetry geometries, in which the O side of OH points toward H2. Corroborating and extending earlier work of Hoffman and Yarkony [J. Chem. Phys. 113, 10091 (2000)], these calculations reveal a steep gradient away from the OH-H2 conical intersection as a function of both the OH orientation and interfragment distance. The former will give rise to a high degree of OH rotational excitation, as observed for the quenched OH X 2Pi products.     

Spectroscopic and spin-orbit calculations on the SO+ radical cation

Highly correlated ab initio methods were used in order to generate the potential-energy curves of the SO+ electronic states correlating to S+(4Su)+O(3Pg) and S+(2Du)+O(3Pg). These curves were used for deducing accurate spectroscopic properties for these electronic states. Our calculations predict the existence of a 2Phi state lying close in energy to the well-characterized b 4Sigma- state and several weakly bound quartet and doublet states located in the 6-9 eV internal energy range not identified yet. The spin-orbit integrals between these electronic states were evaluated using these highly correlated wave functions, allowing the discussion of the metastability and the predissociation processes forming S+ +O in their electronic ground states. Multistep spin-orbit-induced predissociation pathways are suggested. More specifically, the experimentally determined dissociative potential-energy curve [H. Bissantz et al., Z. Phys. D 22, 727 (1992)] proposed to explain the rapid SO+(b 4Sigma-, v> or =13)-->S+(4Su)+O(3Pg) reaction is found to coincide with the 2 4Pi potential-energy curve for short internuclear distances and with the repulsive 1 6Pi state for longer internuclear separations.     

Isolation of membrane vesicles with inverted topology by osmotic lysis of Azotobacter vinelandii spheroplasts.

Membrane vesicles were prepared from Azotobacter vinelandii spheroplasts by lysis in either potassium phosphate (pH 7.0) or Tris1-acetate (pH 7.8) buffers. These 2 types of preparations differ considerably in their properties: 1) Examination by scanning electron microscopy reveals that the Pi vesicles consist primarily of closed structures 0.6-0.8 micrometer in diameter with a rough or particulate surface similar to that of spheroplasts. The Tris vesicles are significantly smaller, 0.1-0.3 micrometer in diameter, and have a much smoother surface structure. 2) Antisera from rabbits immunized with A. vinelandii lipopolysaccharide antigen will agglutinate Pi vesicles but not Tris vesicles. 3) Tris vesicles have a fourfold higher specific activity of latent H+-ATPase than Pi vesicles. After exposure to Triton X-100 similar ATPase activities are observed for both types of vesicles. 4) Pi vesicles transport calcium in the presence of ATP or lactate at less than 30% of the rats observed for Tris vesicles. 5) Tris vesicles have less than 22% of the transport capacity of Pi vesicles for accumulation of labeled sucrose and less than 3% of the capacity for valinomycin-induced uptake of rubidium observed during respiration. 6) Quinacrine fluorescence intensity is reduced by 30% during lactate oxidation and 20% during ATP hydrolysis by Tris vesicles. Under similar conditions, fluorescence in Pi vesicles is quenched by only 7% and less than 2%, respectively. These findings suggest that Pi vesicles have the normal orientation of the intact cell whereas Tris vesicles have an inverted topology.     

Multiple lithium exchange under lithium cationization of cyclodextrins

Multiple lithium exchange is observed during electrospray ionization of alpha-, beta- and gamma-cyclodextrins from aqueous methanolic solution containing LiOH. Apart from [M + Li](+) and [M + nLi - (n - 1)H](+) ions, abundant multiply lithiated doubly charged ions corresponding to [M + nLi - (n - 2)H](2+) ions were observed. At least six lithium exchanges in alpha-cyclodextrin, seven in beta-cyclodextrin and eight in gamma-cyclodextrin were noted. The propensity of multiply lithiated doubly charged ions is much less in the open-ended maltoheptaose. It appears that during droplet or cluster formation and subsequent desolvation, LiOH trapped in the cavity of cyclodextrin reacts to form multiply lithiated ions. The singly charged [M + Li](+) and doubly charged [M + 2Li](2+) ions fragment by glycosidic cleavages, giving B series of ions, whereas the multiply lithiated ions fragment by cross ring cleavages ((2, 4)A or (O, 2)X) followed by glycosidic cleavage. From the tandem mass spectra, it appears that a maximum of two lithium exchanges occur in one sugar unit in these cyclodextrins.     

Higher excited electronic transitions of polyacetylene cations HC2nH+ n = 2-7 in neon matrixes

The polyacetylene HC2nH+ n = 2-7 cations were produced from a mixture of diacetylene with helium in a hot cathode-discharge source. After a mass-selective deposition, their absorption spectra were studied in 6 K neon matrixes. Besides the known A2Pi <-- X2Pi system, several new transitions to higher excited 2Pi electronic states of these cations have been observed. In the case of HC4H+ and HC6H+, only one new weak absorption system has been detected with the onset at 336.1 and 417.2 nm, respectively. These C2Pi <-- X2Pi transitions form a series that extends to HC10H+. Two further electronic transitions are observed for HC8H+ through to HC14H+; a weaker B2Piu <-- X2Pig and a strong E2Piu <-- X2Pig in the UV. The integrated intensity of the UV system of the polyacetylene cations exceeds that of the A2Pi <-- X2Pi transition by an order of magnitude.