Development of models for prediction of the antioxidant activity of derivatives of natural compounds

Antioxidants are important for maintaining the appropriate balance between oxidizing and reducing species in the body and thus preventing oxidative stress. Many natural compounds are being screened for their possible antioxidant activity. It was found that a mushroom pigment Norbadione A, which is a pulvinic acid derivative, shows an antioxidant activity; the same was found for other pulvinic acid derivatives and structurally related coumarines. Based on the results of in vitro studies performed on these compounds as a part of this study quantitative structure–activity relationship (QSAR) predictive models were constructed using multiple linear regression, counter-propagation artificial neural networks and support vector regression (SVR). The models have been developed in accordance with current QSAR guidelines, including the assessment of the models applicability domains. A new approach for the graphical evaluation of the applicability domain for SVR models is suggested. The developed models show sufficient predictive abilities for the screening of virtual libraries for new potential antioxidants.     

Qualitative interpretation of the dynamics of collinear exchange reactions

The many-channel resonance scattering theory is adapted for the purpose of investigation of the dynamics of collinear chemical exchange reactions. A general expression for the scattering matrix is presented which appears to be useful for developing a simple algebraic procedure of calculation of the parameters needed for various resonance expansions. The case of weak nonadabatic coupling between vibrational levels is studied in detail by means of a version of perturbational treatment that is valid for a resonance situation. This approach is then applied to account for the qualitative peculiarities observed in recent experimental and numerical investigations of reactive collosions A + BC → AB + C. The Polanyi rules are formulated in terms of the accessibility of a transition zone region for adiabatic channel functions. Several mechanisms of product population inversion are discussed. That of them occurring at low kinetic energies in the transition zone is supposed to arise due to the resonance scattering caused by the wells of dynamic adjabatic potentials, which have been revealed by Wu, Johnson and Levine. The estimations for Breit-Wigner reduced width amplitudes are given in framework of weak coupling approximation. They are shown to provide a meaningful background for understanding of resonance phenomena found in quantum calculations.     

Influence of aggregation of asphaltenes on the rheological properties of oil

Photon correlation spectroscopy was used to determine the threshold concentrations of n-heptane for phase transitions of asphaltenes in model systems for two types of oil. The rheological properties exhibited by high-paraffin oil in the asphaltene aggregation process were analyzed. It was shown that the presence of resin and paraffi n fractions in oil prevents phase transition of asphaltenes at the threshold concentration of n-heptane for the model system, so that a higher precipitant concentrations is required for aggregation of asphaltenes and formation of oil sludge.     

Self-Consistency of the Theory of Elementary Stage Rates of Reversible Processes and the Equilibrium Distribution of Reaction Mixture Components

An analysis is presented of one of the key concepts of physical chemistry of condensed phases: the theory self-consistency in describing the rates of elementary stages of reversible processes and the equilibrium distribution of components in a reaction mixture. It posits that by equating the rates of forward and backward reactions, we must obtain the same equation for the equilibrium distribution of reaction mixture components, which follows directly from deducing the equation in equilibrium theory. Ideal reaction systems always have this property, since the theory is of a one-particle character. Problems arise in considering interparticle interactions responsible for the nonideal behavior of real systems. The Eyring and Temkin approaches to describing nonideal reaction systems are compared. Conditions for the self-consistency of the theory for mono- and bimolecular processes in different types of interparticle potentials, the degree of deviation from the equilibrium state, allowing for the internal motions of molecules in condensed phases, and the electronic polarization of the reagent environment are considered within the lattice gas model. The inapplicability of the concept of an activated complex coefficient for reaching self-consistency is demonstrated. It is also shown that one-particle approximations for considering intermolecular interactions do not provide a theory of self-consistency for condensed phases. We must at a minimum consider short-range order correlations.     

Density functional theory-based prediction of the formation constants of complexes of ammonia in aqueous solution: indications of the role of relativistic effects in the solution chemistry of gold(I)

A prediction of the formation constants (log K1) for complexes of metal ions with a single NH3 ligand in aqueous solution, using quantum mechanical calculations, is reported. DeltaG values at 298 K in the gas phase for eq 1 (DeltaG(DFT)) were calculated for 34 metal ions using density functional theory (DFT), with the expectation that these would correlate with the free energy of complex formation in aqueous solution (DeltaG(aq)). [M(H2O)6]n+(g) + NH(3)(g) = [M(H2O)5NH3]n+(g) + H2O(g) (eq 1). The DeltaG(aq) values include the effects of complex changes in solvation on complex formation, which are not included in eq 1. It was anticipated that such changes in solvation would be constant or vary systematically with changes in the log K(1) value for different metal ions; therefore, simple correlations between DeltaG(DFT) and DeltaG(aq) were sought. The bulk of the log K1(NH3) values used to calculate DeltaG(aq) were not experimental, but estimated previously (Hancock 1978, 1980) from a variety of empirical correlations. Separate linear correlations between DeltaG(DFT) and DeltaG(aq) for metal ions of different charges (M2+, M3+, and M4+) were found. In plots of DeltaG(DFT) versus DeltaG(aq), the slopes ranged from 2.201 for M2+ ions down to 1.076 for M4+ ions, with intercepts increasing from M2+ to M4+ ions. Two separate correlations occurred for the M3+ ions, which appeared to correspond to small metal ions with a coordination number (CN) of 6 and to large metal ions with a higher CN in the vicinity of 7-9. The good correlation coefficients (R) in the range of 0.97-0.99 for all these separate correlations suggest that the approach used here may be the basis for future predictions of aqueous phase chemistry that would otherwise be experimentally inaccessible. Thus, the log K1(NH3) value for the transuranic Lr3+, which has a half-life of 3.6 h in its most stable isotope, is predicted to be 1.46. These calculations should also lead to a greater insight into the factors governing complex formation in aqueous solution. All of the above DFT calculations involved corrections for scalar relativistic effects (RE). Au has been described (Koltsoyannis 1997) as a "relativistic element". The chief effect of RE for group 11 ions is to favor linear coordination geometry and greatly increase covalence in the M-L bond. The correlation for M+ ions (H+, Cu+, Ag+, Au+) involved the preferred linear coordination of the [M(H2O)2]+ complexes, so that the DFT calculations of DeltaG for the gas-phase reaction in eq 2 were carried out for M = H+, Cu+, Ag+, and Au+. [M(H2O)2]+(g) + NH3(g) = [M(H2O)NH3]+(g) + H2O(g) (eq 2). Additional DFT calculations for eq 2 were carried out omitting corrections for RE. These indicated, in the absence of RE, virtually no change in the log K1(NH3) value for H+, a small decrease for Cu+, and a larger decrease for Ag+. There would, however, be a very large decrease in the log K1(NH3) value for Au(I) from 9.8 (RE included) to 1.6 (RE omitted). These results suggest that much of "soft" acid behavior in aqueous solution in the hard and soft acid-base classification of Pearson may be the result of RE in the elements close to Au in the periodic table.     

Regularities of formation of emboli of liquid polymer solutions in aqueous medium

Work on creating the basis for embolic compositions for the treatment of a wide range of pathologies of various organs was conducted. This basis is a solution of a biocompatible water-insoluble polymer in a biocompatible water-soluble solvent. Formation of the embolus in such an aqueous medium takes place in the transition of the solvent into the aqueous phase and the formation of a solid polymer clot occluding a blood vessel. Criteria for selection of the polymer and the solvent for the basis were formulated, and a number of polymers and solvents that meet these criteria were selected for further research. Research on the solubility of the selected polymers in solvents was carried out, and the rheoviscometric characteristics of polymer solutions, as well as parameters of solid emboli formation of polymer solutions in aqueous media, were found. The solution of cellulose acetate plasticized with OPADRY CA 500F190000 polyethylene glycol in dimethylsulfoxide with concentration of no less than 60 g/L was recognized as optimal for further studies.     

Thermodynamic properties of individual ions, calculated in terms of conception of real thermodynamic properties of individual ions in solutions

Real and chemical thermodynamic characteristics for several ions in mixtures of water with organic solvents of different classes are calculated on the basis of the proposed conception of real thermodynamic properties of individual ions in solutions. This conception is an improved and generalized version of the procedure for describing thermodynamic activity of individual ions in aqueous electrolyte solutions, which was successfully exploited for many years. The offered methodology enables one to determine thermodynamic characteristics of individual ions both in aqueous and nonaqueous electrolytes. The use of the Volta potential differences for determining real and chemical thermodynamic characteristics of individual ions in solutions is validated.     

Improvement of the efficiency of electrochemical refining of cobalt

To improve the purity of cobalt produced by electrochemical refining, the optimal electrolyte composition and electrolysis mode were determined and a method for diminishing the electrochemical activity of impurity metals in anodic dissolution of the raw metal and a system for deep purification of the electrolyte solution to remove impurities were developed. Cathode deposits with a conditional cobalt content exceeding 99.999 wt %, found in an analysis for the 11 main impurities, were obtained by using the above results in refining of K1A cobalt (≥99.30 wt % Co) in an electrolyzer of distinctive design.     

Theoretical analysis of resonant raman scattering: Simulations of lineshapes and excitation profiles

The steady-state response of a three-level system in the presence of a strong laser field is described with the density operator formalism, in order to derive an analytical expression for the intensity of resonance Raman scattering. The Liouville equation for the density operator is written in quantum form for both the molecular system and the radiation field, making use of the dipole and rotating-wave approximations for the matter-radiation interaction, and of the Markov approximation for the molecular decays. The equation is solved exactly for the laser field, and in perturbative way for the generated field. The results account for power broadening of the generated line. Rabi intensity-dip of the generated signal, and for the excitation profiles in the Franck-Condom approximation.     

Calculation of enthalpies of hydrogenation of hydrocarbons

Sets of hydrogen molecule equivalents have been developed which permit the calculation of hydrogenation of different types of carbon-carbon bonds from ab initio total energies (3-21G and 6-31G* basis sets, and, to a more limited extent, for MP2/6-31G* data) of reactants and products. The calculated enthalpies of hydrogenation are in good agreement with experiment for unstrained molecules, with average errors on the order of 2 kcal/mol. The 6-31G* equivalents allow the enthalpies for strained molecules to be calculated accurately, but the 3-21G equivalents do not. The equivalents for both basis sets have been tested by calculating the enthalpies of hydrogenation of carbon-carbon bonds in nitrogen- and oxygen-containing organic molecules, free radicals, and classical carbocations. The results are in good agreement with experiment in most cases.     

Total synthesis of pinnatoxins A and G and revision of the mode of action of pinnatoxin A

Pinnatoxins belong to an emerging class of potent marine toxins of the cyclic imine group. Detailed studies of their biological effects have been impeded by unavailability of the complex natural product from natural sources. This work describes the development of a robust, scalable synthetic sequence relying on a convergent strategy that delivered a sufficient amount of the toxin for detailed biological studies and its commercialization for use by other research groups and regulatory agencies. A central transformation in the synthesis is the highly diastereoselective Ireland-Claisen rearrangement of a complex α,α-disubstituted allylic ester based on a unique mode for stereoselective enolization through a chirality match between the substrate and the lithium amide base. With synthetic pinnatoxin A, a detailed study has been performed that provides conclusive evidence for its mode of action as a potent inhibitor of nicotinic acetylcholine receptors selective for the human neuronal α7 subtype. The comprehensive electrophysiological, biochemical, and computational studies support the view that the spiroimine subunit of pinnatoxins is critical for blocking nicotinic acetylcholine receptor subtypes, as evidenced by analyzing the effect of a synthetic analogue of pinnatoxin A containing an open form of the imine ring. Our studies have paved the way for the production of certified standards to be used for mass-spectrometric determination of these toxins in marine matrices and for the development of tests to detect these toxins in contaminated shellfish.     

Assessment of the suitability of Monte Carlo simulation for activity measurements of extended sources

Monte Carlo simulations can be a powerful tool in calibrating high-resolution gamma-ray spectrometry based on high pure germanium (HPGe) detectors. The purpose of this work is to examine the applicability of Monte Carlo simulations for the computation of the efficiency transfer in various measurement geometries on the basis of the detected efficiency for point source geometry. For this, GEANT4 code was applied for the computation of the detection efficiency for incident gamma energy of radionuclide placed at different distances from HPGe detector from 50 to 2,000 keV in addition for volume sources of different compositions and densities. The experimental efficiency curves were compared with the prediction of the GEANT4 code. Efficiency is computed at discrete values of point and volume sources in different distances to derive new efficiencies values for other distances.     

Development of certified reference samples of solutions of trihalomethanes

A method for the metrological certification of reference samples (RS) of solutions of organic compounds was proposed. The method is based on a procedure of sample preparation that uses both calculated and experimental data and involves the evaluation of the purity of the reagents employed. Impurity components were identified. Procedures for the determination of impurity components in source materials by gas chromatography with flame-ionization detection were developed. Calibration coefficients for halogen-containing impurity components in reference to an internal standard were determined experimentally or calculated. Certified reference samples of solutions of trichloromethane, bromodichloromethane, dibromochloromethane, and tribromomethane were designed for the quality control of drinking water     

Effects of lysophospholipids on membrane order of phosphatidylcholine

Lysophospholipids are known to play a role in a wide range of cellular processes involving membrane–protein or membrane–membrane interactions; however lysolipids–lamellar lipids interactions remain unclear. The effects of lysolipids on membrane order and dynamics were examined using optical birefringence and fluorescence techniques. We found that lysophosphatidic acid (LPA) induces a considerable disorder in chain orientation for synthetic lipid of dimyristoyl-phosphatidylcholines (DMPC), whereas a slight order for natural lipid of egg yolk phosphatidylcholine (Egg-PC), e.g. the chain order decreases by 10% at 0.1 mole ratio for DMPC in comparison with the membranes without LPA and increases by 3.4% at 0.09 mole ratio for Egg-PC. Also, membrane fluidity corresponds with the change in the chain disorder, namely, the fluidity increases for DMPC membranes, while decreases for Egg-PC membranes by addition of LPA. The difference in the effects of LPA is interpreted by a difference in the chain packing between the synthetic and the natural lipid bilayers. LPA can be incorporated into natural lipid membranes without disturbance, and readjusts itself to a more favorable hydrophobic match with the bilayers. Lysophophatidylcholine (LPC) also induces a disorder in DMPC membranes, but the decrease in chain order is only half compared with that for LPA.     

Determination of trace levels of benzodiazepine in urine using capillary electrochromatography-time of flight mass spectrometry

This paper details a method for the separation and determination of ten benzodiazepines in urine using CEC-MS(TOF) and an hexyl acrylate-based porous monolith. The TOF mass spectrometer provides an exact mass of protonated benzodiazepines to three decimal places (1-6 ppm). This high selectivity along with the CEC separation, provides an effective method for the identification of benzodiazepines. Linearity is satisfactory for all compounds in the concentration range of 25-500 ng/mL for lorazepam and 12.5-500 ng/mL for the others. The RSDs are between 1.4-2.3% for retention times and 1.1-9.2% for relative areas. Using the monolithic stationary phase, a preconcentration step is achievable and permits an 75-140-fold improvement in sensitivity. This strategy permits the quantification of these drugs down to 1 ng/mL in urine. This method was used for the analysis of benzodiazepines in spiked urine samples.     

Role of NAA in the characterization of sampling behaviors of multiple elements in CRMs

Taking the advantage of the high precision and accuracy of neutron activation analysis (NAA), sampling constants have been determined for multielements in several international and Chinese reference materials. The suggested technique may be used for finding elements in existing CRMs qualified for quality control (QC) of small size samples (several mg or less), and characterizing sampling behaviors of multielements in new CRMs specifically made for QC of microanalysis.     

Determination of the salting coefficients of benzoyltrifluoroacetone

The solubilities of benzoyltrifluoroacetone in water and in aqueous solutions of eight electrolytes at 25 degrees were determined. The salting coefficients of benzoyltrifluoroacetone for these electrolytes were obtained from these data, and were found to accord with McDevit-Long theory. Comparison of the salting coefficients for benzoyltrifluoroacetone with those for benzoylacetone suggested that the former has a less polar structure than the latter in their aqueous solutions.     

Prediction of the three-dimensional structure of the enzymatic domain of t-PA

Summary Tissue plasminogen activator (t-PA), an enzyme of the fibrinolytic system, is responsible for lysis of fibrin via activation of plasminogen, and therefore for degradation of blood clots. There are currently no X-ray crystal structure data of the t-PA molecule available either in whole or in part. We therefore predicted the three-dimensional structure of the protease domain by means of computer-graphical methods.The model obtained forms a basis for understanding the binding of plasminogen to the active site of t-PA. In addition, the interactions of various inhibitors with t-PA were studied by modeling them into the active site. The model also yields an explanation for the observed amidolytic activity of t-PA in the single chain form.     

A study of the elution of macromolecules from columns of thermally-treated controlled-porosity glasses

Summary Controlled-porosity glasses (CPG) are sieves for macromoleculars, very widely applied in chromatographic columns for the separation of polymers and biopolymers by means of size-exclusion chromatography (SEC) and affinity chromatography. This paper deals with the influence of the thermal treatment of CPG on the elution of polymers in SEC columns. The problem is examined for a few mobile phases and for glasses having different porosities. Additionally, the SEC results obtained are compared with the adsorption properties of the glases investigated.