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Development of models for prediction of the antioxidant activity of derivatives of natural compounds
Authors:Rok Martin?i?  Igor Kuzmanovski  Alain Wagner  Marjana Novi?
Institution:1. National Institute of Chemistry, Hajdrihova 19, 1001 Ljubljana, Slovenia;2. Institute of Chemistry, Ss. Cyril and Methodius University in Skopje, Arhimedova 5, 1000 Skopje, Macedonia;3. Laboratory of Functional Chemical Systems, Faculty of Pharmacy, 74 Route du Rhin, 67401 Illkirch-Graffenstaden, France
Abstract:Antioxidants are important for maintaining the appropriate balance between oxidizing and reducing species in the body and thus preventing oxidative stress. Many natural compounds are being screened for their possible antioxidant activity. It was found that a mushroom pigment Norbadione A, which is a pulvinic acid derivative, shows an antioxidant activity; the same was found for other pulvinic acid derivatives and structurally related coumarines. Based on the results of in vitro studies performed on these compounds as a part of this study quantitative structure–activity relationship (QSAR) predictive models were constructed using multiple linear regression, counter-propagation artificial neural networks and support vector regression (SVR). The models have been developed in accordance with current QSAR guidelines, including the assessment of the models applicability domains. A new approach for the graphical evaluation of the applicability domain for SVR models is suggested. The developed models show sufficient predictive abilities for the screening of virtual libraries for new potential antioxidants.
Keywords:AD  applicability domain  CP-ANN  counter-propagation artificial neural network  ED  Euclidean distance  GA  genetic algorithm  MD  Mahalanobis distance  MEDS  minimum Euclidean distance space  QSAR  quantitative structure&ndash  activity relationship  RMSE  root mean square error  ROS  reactive oxygen species  SOM  self-organizing map  SVM  support vector machine  SVR  support vector regression
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