Hydrogen Bonding in Pyridine N-Oxide/Acid Systems: Proton Transfer and Fine Details Revealed by FTIR, NMR, and X-ray Diffraction

The H-bonded complexes of pyridine N-oxide (PyO) with H(2)O, acetic, cyanoacetic, propiolic, tribromoacetic, trichloroacetic, trifluoroacetic, hydrochloric, and methanesulfonic acids have been studied by FTIR and NMR spectroscopy, X-ray diffraction, and quantum chemical DFT calculations. Correlations between vibrational frequencies of the NO stretching and PyO ring modes and geometric parameters of the H-bond have been established. FTIR experiments show and DFT calculations confirm that definite discontinuity is present in the vicinity of the midpoint in the proton transfer pathway. The established correlations significantly aid in the understanding of fine effects such as the isotope (deuteration) effect, crystal-to-solution transition, or criticality of aqueous solutions induced by ionic pairs. Geometric isotope effect in the ionic H-bond aggregate of PyO·H(D)Cl was found to be extraordinary large. Measured FTIR, CP/MAS, and high-resolution (13)C NMR spectra indicate that H-bond in the PyO·HCl complex in polar solvent can potentially be more ionic than in the crystal. Vibrational modes of ionic pairs originating via proton transfer in H-bond complexes can provide new information concerning the interionic interaction and its role in the phase separation and mezo-structuring processes. The results are compared to the relevant data for PyO·HCl complex in argon matrix.     

Collisions of DCl with pure and salty glycerol: enhancement of interfacial D --> H exchange by dissolved NaI

The fate of DCl molecules striking pure glycerol and a 2.6 M NaI-glycerol solution is investigated using scattering, uptake, and residence time measurements. We find that dissolved Na+ and I- ions alter every gas-liquid pathway from the moment of contact of DCl with the surface to its eventual emergence as HCl. In particular, the salt enhances both trapping-desorption of DCl and interfacial DCl --> HCl exchange at the expense of DCl entry into the bulk solution. The reduced entry and enhanced desorption of thermalized DCl molecules are interpreted by assuming that Na+ and I- ions bind to interfacial OH groups and tie up surface sites that would otherwise capture incoming DCl molecules. These ion-glycerol interactions may also be responsible for enhancing interfacial D --> H exchange by disrupting the interfacial hydrogen bond network that carries the newly formed H+ ion away from its Cl- pair. This disruption may increase the fraction of interfacial Cl- and H+ that recombine and desorb immediately as HCl before the ions separate and diffuse deeply into the bulk.     

Molecular beam studies of HCl dissolution and dissociation in cold salty water

Gas-liquid scattering experiments are used to explore collisions and reactions of HCl and DCl with 12 mol% LiBr solutions of H(2)O and D(2)O at 208-218 K. These ～6 M aqueous salt solutions have vapor pressures just below 0.01 Torr, requiring special consideration of the effects of gas-vapor collisions. We find that impinging HCl molecules readily equilibrate on the surface of the solution even at incident energies of 90 kJ mol(-1). Approximately 90% of the thermalized HCl molecules dissolve and dissociate for long times in the cold salty solution, while the remaining 10% desorb from the surface intact. There is no evidence for rapid, interfacial conversion of HCl into DCl, in striking contrast to previous observations of distinct submicrosecond DCl→HCl exchange in collisions of DCl with salty glycerol at 292 K. These results indicate that cold salty water efficiently captures impinging HCl molecules and suppresses interfacial proton exchange, most likely because of the long interaction times of the HCl molecules in contact with the cold surface and because of facile transport of H(+) and Cl(-) from the interfacial region into the bulk solution.     

Solution 1H NMR characterization of the distal H-bond network and the effective axial field in the resting-state, high-spin ferric, substrate-bound complex of heme oxygenase from N. meningitidis

The solution (1)H 1D and 2D NMR spectra of the high-spin ferric, resting-state, substrate-bound complex of heme oxygenase, HO, from the pathological bacterium N. meningitidis have been investigated to assess the prospects for definitive assignment of hyperfine shifted and relaxed residue protons and the interpretation of those shifts in terms of the anisotropy and orientation of the paramagnetic susceptibility tensor, chi. Appropriately tailored 1D/2D NMR data, together with analyses of paramagnetic relaxation and a preliminary estimate of the magnetic anisotropy, reveal a chi that is axially anisotropic and oriented along the Fe-His vector. Together with T(-)(2) dependence of the shifts, Deltachi(ax) yields a zero-field splitting constant, D = 9.1 cm(-)(1), which is expected to serve as a very sensitive probe of H-bond interactions between the iron-ligated water and a series of distal ordered water molecules implicated in the mechanism of HO action. The side chains, Gln49 and His53, involved in the stabilization of catalytically relevant water molecules, were found to exhibit orientations rotated by 180 degrees about the beta-gamma bonds in solution relative to those in the crystal. The implication of these reorientations on the details of the distal H-bond network is discussed. The H-bond donor strengths of Gln 49 and His53 were found to respond appropriately to H-bond donor (water) versus H-bond acceptor (cyanide) iron ligands. Very slow NH exchange for the N-terminal portion of the distal helix suggest that an intrinsically "unstable" distal helix may be valid only for the C-terminal portion.     

The mechanism of H-bond rupture: the vibrational pre-dissociation of C2H2-HCl and C2H2-DCl

Pair correlated fragment rovibrational distributions are presented following vibrational predissociation of the C2H2-DCl van der Waals dimer initiated by excitation of the asymmetric (asym) C-H stretch. The only observed fragmentation pathways are DCl (v= 0; j= 6-9)+ C2H2(nu2= 1; j= 1-5). These and previously reported data on the related C2H2-HCl species are analysed using the angular momentum (AM) method. Calculations accurately reproduce fragment rovibrational distributions following dissociation of the C2H2-HCl dimer initiated either by excitation of the asym C-H stretch or via the HCl stretch, and those from C2H2-DCl initiated via asym C-H stretch excitation. The calculations demonstrate that the dimer is bent at the moment of dissociation. Several geometries are found that lead to H-bond breakage via a clearly identified set of fragment quantum states. The results suggest a hierarchy in the disposal of excess energy and angular momentum between fragment vibration, rotation and recoil. Deposition of the largest portion of energy into a C2H2 vibrational state sets an upper limit on HCl rotation, which then determines the energy and AM remaining for C2H2 rotation and fragment recoil. Acceptor C2H2 vibrational modes follow a previously noted propensity, implying that the dissociating impulse must be able to induce appropriate nuclear motions both in the acceptor vibration and in rotation of the C2H2 fragment.     

Carbonic acid: from polyamorphism to polymorphism

Layers of glassy methanolic (aqueous) solutions of KHCO3 and HCl were deposited sequentially at 78 K on a CsI window, and their reaction on heating in vacuo in steps from 78 to 230 K was followed by Fourier transform infrared (FTIR) spectroscopy. After removal of solvent and excess HCl, IR spectra revealed formation of two distinct states of amorphous carbonic acid (H2CO3), depending on whether KHCO3 and HCl had been dissolved in methanol or in water, and of their phase transition to either crystalline alpha- or beta-H2CO3. The main spectral features in the IR spectra of alpha- and beta-H2CO3 are observable already in those of the two amorphous H2CO3 forms. This indicates that H-bond connectivity or conformational state in the two crystalline phases is on the whole already developed in the two amorphous forms. The amorphous nature of the precursors to the two crystalline polymorphs is confirmed using powder X-ray diffraction. These diffractograms also show that alpha- and beta-amorphous H2CO3 are two distinct structural states. The variety of structural motifs found within a few kJ/mol in a computational search for possible crystal structures provides a plausible rationalization for (a) the observation of more than one amorphous form and (b) the retention of the motif observed in the amorphous form in the corresponding crystalline form. The polyamorphism inferred for carbonic acid from our FTIR spectroscopic and powder X-ray diffraction studies is special since two different crystalline states are linked to two distinct amorphous states. We surmise that the two amorphous states of H2CO3 are connected by a first-order-like phase transition.     

Raman spectroscopic study of hydrogen ordered ice XIII and of its reversible phase transition to disordered ice V

Raman spectra of recovered ordered H(2)O (D(2)O) ice XIII doped with 0.01 M HCl (DCl) recorded in vacuo at 80 K are reported in the range 3600-200 cm(-1). The bands are assigned to the various types of modes on the basis of isotope ratios. On thermal cycling between 80 and 120 K, the reversible phase transition to disordered ice V is observed. The remarkable effect of HCl (DCl) on orientational ordering in ice V and its phase transition to ordered ice XIII, first reported in a powder neutron diffraction study of DCl doped D(2)O ice V (C. G. Salzmann, P. G. Radaelli, A. Hallbrucker, E. Mayer, J. L. Finney, Science, 2006, 311, 1758), is demonstrated by Raman spectroscopy and discussed. The dopants KOH and HF have only a minor effect on hydrogen ordering in ice V, as shown by the Raman spectra.     

Phenol vs water molecule interacting with various molecules: Sigma-type, pi-type, and chi-type hydrogen bonds, interaction energies, and their energy components

The nature of interactions of phenol with various molecules (Y = HF, HCl, H2O, H2S, NH3, PH3, MeOH, MeSH) is investigated using ab initio calculations. The optimized geometrical parameters and spectra for the global energy minima of the complexes match the available experimental data. The contribution of attractive (electrostatic, inductive, dispersive) and repulsive (exchange) components to the binding energy is analyzed. HF favors sigma O-type H-bonding, while H2O, NH3, and MeOH favor sigma H-type H-bonding, where sigma O-/sigma H-type is the case when a H-bond forms between the phenolic O/H atom and its interacting molecule. On the other hand, HCl, H2S, and PH3 favor pi-type H-bonding, which are slightly favored over sigma O-, sigma H-, sigma H-type bonding, respectively. MeSH favors chi H-type bonding, which has characteristics of both pi and sigma H. The origin of these conformational preferences depending on the type of molecules is elucidated. Finally, phenol-Y complexes are compared with water-Y complexes. In the water-Y complexes where sigma O/sigma H-type involves the H-bond by the water O/H atom, HF and HCl favor sigma O-type, H2O involves both sigma O-/sigma H-type, and H2S, NH3, PH3, MeOH, and MeSH favor sigma H-type bonding. Except for HF, seven other species have larger binding energies with a phenol molecule than a water molecule.     

Laser spectroscopic excitation function and reaction threshold studies of the H + DCl --> HCl + D gas-phase isotope exchange reaction

The dynamics of the gas-phase hydrogen atom exchange reaction H + DCl --> HCl + D were studied using the pulsed laser photolysis/laser induced fluorescence "pump-and-probe" method. Laser photolysis of H2S at 222 nm was used to generate nonequilibrium distributions of translationally excited hydrogen atoms at high dilution in a flowing moderator gas (Ar)/reagent (DCl) mixture. H and D atoms were detected with sub-Doppler resolution via Lyman-alpha laser induced fluorescence spectroscopy, which allowed the measurement of the line shapes of the moderated H atom Doppler profiles as well as the concentration of the D atoms produced in the H + DCl --> HCl + D reaction. From the measured H atom Doppler profiles, the time evolution of the initially generated nascent nonequilibrium H atom speed distribution toward its room-temperature thermal equilibrium form was determined. In this way, the excitation function and the reaction threshold (E0 = 0.65 +/- 0.13 eV) for the H + DCl --> HCl + D reaction could be determined from the measured nonequilibrium D atom formation rates and single collision absolute reaction cross-section values of 0.12 +/- 0.04 A2 and 0.45 +/- 0.11 A2 measured at reagent collision energies of 1.0 and 1.4 eV, respectively.     

Diphenyloligothiophene-based dichromophoric macrocycles and their ability to form donor/acceptor complexes

A series of four dichromophoric rigid macrocycles 6a-6d, two with diphenyloligothiophene chromophores, the other two with more electron-rich diphenyl-EDOT or diphenyl-bis-EDOT chromophores, have been synthesized. The absorption spectrum of the diphenyl-bis-EDOT based macrocycle 6d displayed the most pronounced vibronic resolution with a well-resolved 0-0 transition, indicating a fully planarized geometry of the diphenyl-bis-EDOT chromophores. The (1)H NMR spectra of the macrocycles displayed weak to moderate chemical shifts of characteristic signals upon addition of pi-conjugated oligonitro-9-fluorenone acceptors. X-ray single-crystal analysis showed that columnar pi-stacked donor/acceptor complexes are formed with the stacks composed of alternating donor and acceptor molecules. The stoichiometry of the crystalline, dark-colored complexes was found to be 1:1 by elemental analysis and integration of the (1)H NMR peaks. The complex formation is accompanied by remarkably large Stern-Volmer constants of fluorescence quenching.     

Separation and complete analyses of the overlapped and unresolved 1H NMR spectra of enantiomers by spin selected correlation experiments

NMR spectroscopic discrimination of optical enantiomers is most often carried out using (2)H and (13)C spectra of chiral molecules aligned in a chiral liquid crystalline solvent. The use of proton NMR for such a purpose is severely hindered due to the spectral complexity and the significant loss of resolution arising from numerous short- and long-distance couplings and the indistinguishable overlap of spectra from both R and S enantiomers. The determination of all the spectral parameters by the analyses of such intricate NMR spectra poses challenges, such as, unraveling of the resonances for each enantiomer, spectral resolution, and simplification of the multiplet pattern. The present study exploits the spin state selection achieved by the two-dimensional (1)H NMR correlation of selectively excited isolated coupled spins (Soft-COSY) of the molecules to overcome these problems. The experiment provides the relative signs and magnitudes of all of the proton-proton couplings, which are otherwise not possible to determine from the broad and featureless one-dimensional (1)H spectra. The utilization of the method for quantification of enantiomeric excess has been demonstrated. The studies on different chiral molecules, each having a chiral center, whose spectral complexity increases with the increasing number of interacting spins, and the advantages and limitations of the method over SERF and DQ-SERF experiments have been reported in this work.     

Molecular distribution at the interface in an aqueous triethylamine solution. <Superscript>1</Superscript>H NMR

The ¹H NMR spectra in a binary aqueous triethylamine solution are recorded with a lower critical point of the liquid–liquid phase transition. It is found that, above the critical temperature the ¹H NMR spectra of water and triethylamine molecules in the phase with a predominant content of triethylamine molecules are characterized by an inhomogeneous broadening. It can be supposed that the found broadening is due to the features of the molecular distribution at the interface.     

13C NMR spectra of protonated S-methylquinolines

The signals in the¹³C NMR spectra of protonated 2-, 3-, 4-, 5-, 6-, and 8-S-methylquinolines in solution in 6 N DCl were assigned. The changes in the¹³C chemical shifts relative to the neutral molecules were compared with the results of calculations within the CNDO/2 approximation. It is shown that when the molecules are protonated, the shift of the¹³C signals is due to changes in the charges and the paramagnetic components of shielding of the nuclei.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 5, pp. 663–665, May, 1980.     

The ultraviolet photodissociation of DCl: H/D isotope effects on the Cl(P) atom spin–orbit branching

The photodissociation of jet-cooled DCl molecules subsequent to excitation in the long-wavelength tail of the first UV absorption band (A¹Π₁←X¹Σ⁺) has been investigated at five wavelengths in the range 200–220 nm. Ground state Cl(²P_3/2) and spin–orbit excited Cl^*(²P_1/2) photofragments were monitored using (2+1) resonance enhanced multiphoton ionization in a time-of-flight mass spectrometer. The product branching fractions are reported and compared with previous experimental results and high-level quantum mechanical calculations for HCl and DCl. A significant H/D isotope effect in the branching fractions is found at all the studied wavelengths, in quantitative agreement with recent theoretical predictions.     

Dissociation of hydrogen fluoride in HF(H(2)O)(7)

We have previously demonstrated that H-bond arrangement has a significant influence on the energetics, structure and chemistry of water clusters. In this work, the effect of H-bond orientation on the dissociation of hydrogen fluoride with seven water molecules is studied by means of graph theory and high level ab initio methods. It is found that cubic structures of HF(H(2)O)(7) are more stable than structures of other topologies reported in the literature. Electronic calculations on all possible H-bond orientations of cubie-HF(H(2)O)(7) show that ionized structures are energetically more favorable than nonionized ones. This is an indication that seven water molecules might be capable of ionizing hydrogen fluoride.     

Theoretical IR spectra for water clusters (H2O)n (n = 6-22, 28, 30) and identification of spectral contributions from different H-bond conformations in gaseous and liquid water

The vibrational IR spectra in the O-H stretching region are computed for water clusters containing 6-22, 28, and 30 molecules using quantum-chemical calculations (B3LYP and an augmented basis set). For the cluster with 20 molecules, several different structures were studied. The vibrational spectrum was partitioned into contributions from different molecules according to their coordination properties. The frequency shifts depend on the number of donated/accepted H-bonds primarily of the two molecules participating in the H-bond, but also of the surrounding molecules H-bonding to these molecules. The frequencies of H-bonds between two molecules of the same coordination type are spread over a broad interval. The most downshifted hydrogen-bond vibrations are those donated by a single-donor 3-coordinated molecule where the H-bond is accepted by a single-acceptor molecule. The H-bonded neighbors influence the downshift, and their contribution can be rationalized in the same way as for the central dimer. Single donors/acceptors cause larger downshifts than 4-coordinated molecules, and the least downshift is obtained for double donors/acceptors. This result is at variance with the conception that experimental liquid water spectra may be divided into components for which larger downshifts imply higher H-bond coordination. A mean spectral contribution for each coordination type for the donor molecule was derived and fitted to the experimental liquid water IR spectrum, which enabled an estimation of the distribution of H-bond types and average number of H-bonds (3.0 +/- 0.2) in the liquid.     

Detection of peptide-phospholipid interaction sites in bilayer membranes by 13C NMR spectroscopy: observation of 2H/31P-selective 1H-depolarization under magic-angle spinning

We have developed a solid-state NMR method for observing the signals due to 13C spins of a peptide in the close vicinity of 31P and 2H spins in deuterated phospholipid bilayers. The signal intensities in 13C high-resolution NMR spectra directly indicate the depolarization of 1H by 1H-31P and 1H-2H dipolar couplings under multiple-contact cross-polarization. This method was applied to a fully 13C-, 15N-labeled 14-residue peptide, mastoparan-X (MP-X), bound to phospholipid bilayers whose fatty acyl chains are deuterated. The 13C NMR spectra for the depolarization were simulated from the chemical shifts and structure of membrane-bound MP-X previously determined and the distribution of 2H and 31P spins in lipid bilayers. The minimization of RMSD between the simulated and the experimental spectra showed that the amphiphilic alpha-helix of MP-X was located in the interface between the water layer and the hydrophobic domain of the bilayer, with nonpolar residues facing the phosphorus atoms and alkyl chains of the lipids.     

Solid-state NMR and calorimetry of structural waters in helical peptides

The peptide hydrates Gly-Gly-Val x 2H(2)O (GGV) and Gly-Ala-Leu x 3H(2)O (GAL) are known to adopt alpha-helical configurations containing waters of hydration in which each water is H-bonded to three or four peptide groups. Herein we report a thermodynamic and solid-state NMR ((2)H and (17)O) study of these peptides. From TGA and DSC, the average enthalpy per H-bond is 15 kJ/mol. The dynamics and average orientation of the hydrate are studied by powder and single-crystal (2)H NMR. Whereas waters that are shown by the X-ray structure to be coordinated by four hydrogen bonds do not yield observable (2)H NMR signals at room temperature, two of the three triply coordinated waters yield residual (2)H quadrupole coupling tensors characteristic of rapid 180 degrees flip motions and the orientation of the residual tensor is that expected from the X-ray structure-derived H-bonding pattern. At -65 degrees C, the flip motions of triply coordinated water in GGV slow into the (2)H NMR intermediate exchange regime whereas the tetrahedrally coordinated water approaches the slow-exchange limit and yields an observable NMR signal. Extensive isotope exchange between water vapor and crystalline GGV establishes the presence of additional hydrate dynamics and solid-state proton transfer along a chain of water-bridged protonated alpha-amino groups.     

Solution 1H, 15N NMR spectroscopic characterization of substrate-bound, cyanide-inhibited human heme oxygenase: water occupation of the distal cavity

A solution NMR spectroscopic study of the cyanide-inhibited, substrate-bound complex of uniformly (15)N-labeled human heme oxygenase, hHO, has led to characterization of the active site with respect to the nature and identity of strong hydrogen bonds and the occupation of ordered water molecules within both the hydrogen bonding network and an aromatic cluster on the distal side. [(1)H-(15)N]-HSQC spectra confirm the functionalities of several key donors in particularly robust H-bonds, and [(1)H-(15)N]HSQC-NOESY spectra lead to the identification of three additional robust H-bonds, as well as the detection of two more relatively strong H-bonds whose identities could not be established. The 3D NMR experiments provided only a modest, but important, extension of assignments because of the loss of key TOCSY cross-peaks due to the line broadening from a dynamic heterogeneity in the active site. Steady-state NOEs upon saturating the water signal locate nine ordered water molecules in the immediate vicinity of the H-bond donors, six of which are readily identified in the crystal structure. The additional three are positioned in available spaces to account for the observed NOEs. (15)N-filtered steady-state NOEs upon saturating the water resonances and (15)N-filtered NOESY spectra demonstrate significant negative NOEs between water molecules and the protons of five aromatic rings. Many of the NOEs can be rationalized by water molecules located in the crystal structure, but strong water NOEs, particularly to the rings of Phe47 and Trp96, demand the presence of at least an additional two immobilized water molecules near these rings. The H-bond network appears to function to order water molecules to provide stabilization for the hydroperoxy intermediate and to serve as a conduit to the active site for the nine protons required per HO turnover.     

Connecting structure to infrared spectra of molecular and autodissociated HCl--water aggregates

The properties of perdeuterated HCl(H2O)n aggregates with n=1, 2, ..., 6 water molecules are studied by means of ab initio molecular dynamics simulations. The specific focus is on the phenomenon of autodissociation of the acid HCl as a function of the microsolvation environment size. The calculations provide a basis for characterization in terms of autodissociation energetics as well as in terms of the impact of thermal fluctuations on structure including proton fluxionality and in terms of anharmonic infrared vibrational spectra. Structure stabilization is dominated by strong hydrogen bonds resulting in distinct topologies, which, in turn, heavily influence acid dissociation. The latter is favored for the first time when n = 4. In that case, three hydrogen bonds can be donated toward the chlorine while at the same time a hydronium core is perfectly solvated according to the eigencomplex motif. Hydrogen-bonding interactions between DCl and its solvating molecules affect the dynamical behavior of the D-Cl bond significantly. This can be seen by the onset of fluxionality and an emerging tendency toward proton transfer for the larger clusters. Connecting IR spectra to structural information is possible by exploiting the following observations. Zwitterionic species show characteristic differences in the hydronium region, whereas the D-Cl stretching regime is useful to distinguish neutral aggregates. Furthermore, in the case of fluxional protons large-amplitude motion leads to characteristic band shifts and significant band broadening effects.