Magnetostructural relationship in the spin-crossover complex t-{Fe(abpt)2[N(CN)2]2}: polymorphism and disorder phenomenon

t-{Fe(abpt)(2)[N(CN)(2)](2)} [abpt = 4-amino-3,5-bis(pyridin-2-yl)-1,2,4-triazole] is an intriguing spin-crossover system that crystallizes in two polymorphs. Polymorph A is paramagnetic; its crystal structure consists of a single molecule located at the center of inversion symmetry. Polymorph B, on the other hand, exhibits a rather complicated two-step-like spin transition; its crystal structure consists of two symmetry-independent molecules. The crystal structure of polymorph B has been derived in the different spin states: above the high-temperature step (300 K), between the two steps (90 K), below the incomplete low-temperature step (50 K), in the light-induced metastable state (15 K), in the thermally quenched metastable state (15 K), and after relaxation from the quenched state (15 K). The correlation between the structure and magnetic properties is precisely established, allowing the complicated magnetic behavior of polymorph B to be well understood. A unique order-disorder phase transition, resulting in a modulation of the metastable state structures, is detected for the first time on such spin-transition compounds. The modulation of the structure originates from a particular ordering of the dicyanamide ligand at one of the two Fe sites.     

Toward the computational design of diastereomeric resolving agents: an experimental and computational study of 1-phenylethylammonium-2-phenylacetate derivatives

The crystal structures, including two new polymorphs, of three diastereomerically related salt pairs formed by (R)-1-phenylethylammonium (1) with (S&R)-2-phenylpropanoate (2), (S&R)-2-phenylbutyrate (3), and (S&R)-mandelate (4) ions were characterized by low-temperature single crystal or powder X-ray diffraction. Thermal, solubility, and solution calorimetry measurements were used to determine the relative stabilities of the salt pairs and polymorphs. These were qualitatively predicted by lattice energy calculations combining realistic models for the dominant intermolecular electrostatic interactions and ab initio calculations for the ions' conformational energies due to the distortion of their geometries by the crystal packing forces. Crystal structure prediction studies were also performed for the highly polymorphic diastereomeric salt pair (R)-1-phenylethylammonium-(S&R)-2-phenylbutyrate (1-3) in an attempt to predict the separation efficiency without relying on experimental information. This joint experimental and computational investigation provides a stringent test for the reliability of lattice modeling approaches to explain the origins of chiral resolution via diastereomer formation (Pasteurian resolution). The further developments required for the computational screening of single-enantiomer resolving agents to achieve optimal chiral separation are discussed.     

Cooperative spin crossover and order-disorder phenomena in a mononuclear compound [Fe(DAPP)(abpt)](ClO(4))(2) [DAPP = [bis(3-aminopropyl)(2-pyridylmethyl)amine], abpt = 4-amino-3,5-bis(pyridin-2-yl)-1,2,4-triazole

The synthesis and detailed characterization of the new spin crossover mononuclear complex [Fe(II)(DAPP)(abpt)](ClO(4))(2), where DAPP = [bis(3-aminopropyl)(2-pyridylmethyl)amine] and abpt = 4-amino-3,5-bis(pyridin-2-yl)-1,2,4-triazole, are reported. Variable-temperature magnetic susceptibility measurements and M?ssbauer spectroscopy have revealed the occurrence of an abrupt spin transition with a hysteresis loop. The hysteresis width derived from magnetic susceptibility measurements is 10 K, the transition being centered at T(c) downward arrow = 171 K for decreasing and T(c) upward arrow = 181 K for increasing temperatures. The crystal structure was resolved in the high-spin (293 and 183 K) and low-spin (123 K) states. Both spin-state structures belong to the monoclinic space group P2(1)/n (Z = 4). The thermal spin transition is accompanied by the shortening of the mean Fe-N distances by 0.177 A. The two main structural characteristics of [Fe(DAPP)(abpt)](ClO(4))(2) are a branched network of intermolecular links in the crystal lattice and the occurrence of two types of order-disorder transitions (in the DAPP ligand and in the perchlorate anions) accompanying the thermal spin change. These features are discussed relative to the magnetic properties of the complex. The electronic structure calculations show that the structural disorder in the DAPP ligand modulates the energy gap between the HS and LS states. In line with previous studies, the order-disorder phenomena and the spin transition in [Fe(DAPP)(abpt)](ClO(4))(2) are found to be interrelated.     

Selective nucleation and discovery of organic polymorphs through epitaxy with single crystal substrates.

Crystallization of 5-methyl-2-[(2-nitrophenyl)amino]-3-thiophenecarbonitrile (1), previously found to produce six conformational polymorphs from solution, on single-crystal pimelic acid (PA) substrates results in selective and oriented growth of the metastable "YN" (yellow needle) polymorph on the (101)(PA) faces of the substrate. Though the freshly cleaved substrate crystals expose (101)(PA) and (111)(PA) faces, which are both decorated with [101](PA) ledges that could serve as nucleation sites, crystal growth of YN occurs on only (101)(PA). Goniometry measurements performed with an atomic force microscope reveal that the (001)(YN) plane contacts (101)(PA) with a crystal orientation [100](YN)//[010](PA) and [010](YN)//[101](PA). A geometric lattice analysis using a newly developed program dubbed GRACE (geometric real-space analysis of crystal epitaxy) indicates that this interfacial configuration arises from optimal two-dimensional epitaxy and that among the six polymorphs of 1, only the YN polymorph, in the observed orientation, achieves reasonable epitaxial match to (101)(PA). The geometric analysis also reveals that none of the polymorphs, including YN, can achieve comparable epitaxial match with (111)(PA), consistent with the absence of nucleation on this crystal face. In contrast, sublimation of 1 on cleaved succinic acid (SA) substrates, which expose large (010)(SA) faces decorated with steps along [101](SA), affords growth of several polymorphs, each with multiple orientations, as well as oriented crystals of a new metastable polymorph on the (010)(SA) surfaces. The lack of polymorphic selectivity on (010)(SA) can be explained by the geometric lattice analysis, which reveals low-grade epitaxial matches between (010)(SA) and several polymorphs of 1 but no inherent selectivity toward a single polymorph. These observations demonstrate the sensitivity of crystal nucleation to substrate surface structure, the potential of crystalline substrates for selective nucleation and discovery of polymorphs, and the utility of geometric lattice modeling for screening of substrate libraries for controlling polymorphism.     

Crystalline polymorphism and molecular structure of sodium pravastatin

In this work different crystallization processes of sodium pravastatin are explored and a new polymorph is obtained. The analytical results of powder X-ray diffraction (PXRD) and thermal analysis for this new polymorph indicate that it is different from the polymorphs previously reported. This new crystal form shows different physical-chemical properties than the previous forms, such as crystallographic structure, thermal behavior, and melting point, 181.5 degrees C. Besides, all crystallization processes previously reported use an aprotic solvent as antisolvent. However, we propose a new crystallization process for sodium pravastatin that uses only protic solvents, overcoming industrial scaling and environmental problems. Variable-temperature PXRD experiments show a transformation between different crystal forms in the range of 80-120 degrees C. Solid-state 13C NMR, reported in this work for the first time, and Fourier transform infrared (FT-IR) studies of some polymorphs show some differences in intermolecular interactions, especially with carboxylate and hydroxyl groups. Quantum mechanical calculations of the pravastatin molecule are also presented for the first time, obtaining a molecular structure similar to the experimental structure existing within the crystal lattice of the tert-octylamonium salt of pravastatin.     

Potential polymorphs of aspirin

Aspirin is only found experimentally in one crystal structure. In this article, the method of Karfunkel and Gdanitz is used to predict potential polymorphs of aspirin. The known structure, containing a nonplanar conformer is found, along with a number of other low energy structures, many of which are based on a planar conformer. Semiempirical and ab initio calculations show that the planar conformer is less stable than the experimentally known one. Force field calculations suggest that the planar conformer is more stable. The lattice energy of the experimentally known crystal structure is 1.4 kcal/mol lower than any of the potential crystal structures, even though there are a number of structures with lower total (lattice+intramolecular) energies. Conformational maps indicate that another stable conformation occurs within a few kilocalories per mole of the known structure. Polymorphs are predicted for this conformer, but it is found to pack poorly. It is proposed that routes to producing polymorphs of aspirin might be found if consideration is given to promoting the stability of the planar conformer with appropriate solvents or additives. ©1999 John Wiley & Sons, Inc. J Comput Chem 20: 262–273, 1999     

A ULFC method for d(4)(D(2d)) ions and a study of the spin singlets contributions to zero-field splitting of Cr(2+) ions in zinc sulfide crystals

A simple theoretical method is shown to yield a detailed explanation of numerous EPR parameters for a d4 configuration ion in tetragonal ligand field. Using the unified ligand-field-coupling (ULFC) scheme, the formulas relating the microscopic spin Hamiltonian parameters with the crystal structure parameters are derived. On the basis of the theoretical formulas, the 210 x 210 complete energy matrices including all the spin states are constructed within a strong field representation. By diagonalizing the complete energy matrices, the local lattice structure and Jahn-Teller energy of Cr(2+) ions in ZnS:Cr(2+) system have been investigated. It is found that the theoretical results are in good agreement with the experimental values. Moreover, the contributions of the spin singlets to the zero-field splitting (ZFS) parameters of Cr(2+) ions in ZnS crystals are investigated for the first time. The results indicate that the spin singlets contributions to ZFS parameter b(0)(4) is negligible, but the contributions to ZFS parameters b(0)(4) and b(4)(4) cannot be neglected.     

Polymorphism in Spin Transition Systems. Crystal Structure, Magnetic Properties, and Mössbauer Spectroscopy of Three Polymorphic Modifications of [Fe(DPPA)(NCS)(2)] [DPPA = (3-Aminopropyl)bis(2-pyridylmethyl)amine

Three polymorphic modifications A-C of [Fe(II)(DPPA)(NCS)(2)], where DPPA = (3-aminopropyl)bis(2-pyridylmethyl)amine is a new tetradentate ligand, have been synthesized, and their structures, magnetic properties, and M?ssbauer spectra have been investigated. For polymorph A, variable-temperature magnetic susceptibility measurements as well as M?ssbauer spectroscopy have revealed the occurrence of a rather gradual HS if LS transition without hysteresis, centered at about 176 K. The same methods have shown that polymorph B is paramagnetic over the temperature range 4.5-295 K, whereas polymorph C exhibits a very abrupt S = 2 if S = 0 transition with a hysteresis. The hysteresis width is 8 K, the transitions being centered at T(c) downward arrow = 112 K for decreasing and T(c) upward arrow = 120 K for increasing temperatures. The crystal structures of the three polymorphs have been solved by X-ray diffraction at 298 K. Polymorph A is triclinic, space group P&onemacr; with Z = 2, a = 8.710(2) ?, b = 15.645(2) ?, c = 7.985(1) ?, alpha = 101.57(1) degrees, beta = 112.59(2) degrees, and gamma = 82.68(2) degrees. Polymorph B is monoclinic, space group P2(1)/c with Z = 4, a = 8.936(2) ?, b = 16.855(4) ?, c = 13.645(3) ?, and beta = 97.78(2) degrees. Polymorph C is orthorhombic, space group Pbca with Z = 8, a = 8.449(2) ?, b = 14.239(2) ?, and c = 33.463(5) ?. In the three polymorphs, the asymmetric units are almost identical and consist of one chiral complex molecule with the same configuration and conformation. The distorted [FeN(6)] octahedron is formed by four nitrogen atoms belonging to DPPA and two provided by the cis thiocyanate groups. The two pyridine rings of DPPA are in fac positions. The main differences between the structures of the three polymorphs are found in their crystal packing. The stabilization of the high-spin ground state of polymorph B is tentatively explained by the presence of two centers of steric strain in the crystal lattice resulting in the elongation of the Fe-N(aromatic) distance. The observed hysteresis in polymorph C seems to be due to the existence of an array of intermolecular contacts in the crystal lattice making the spin transition more cooperative than in polymorph A.     

Design of a magnetic bistability molecular system constructed by H-bonding and pi...pi-stacking interactions

Crystal structures and magnetic properties were determined for two novel polymorphs of the complex [H2DABCO][Ni(mnt)2] [(H2DABCO)2+ = diprotonated 1,4-diazabicyclo[2.2.2]octane; mnt2- = maleonitriledithiolate]. For each polymorph, anions form a layered structure in which two kinds of dimers were observed. The adjacent anionic sheets are held together by cations via H-bonding interactions between protons of cations and CN groups of anions. Two polymorphs possess spin bistability; namely, upon cooling, a magnetic transition happens at around 120 K with about 1 K hysteresis on heating for the alpha phase and at 112 K with about 10 K hysteresis for the beta phase. Above the transition, the magnetic behaviors of two polymorphs can be approximately interpreted by a singlet-triplet model of an antiferromagnetically coupled S = 1/2 dimer, which is supported by the crystal structures and spin dimer analyses based on extended Hückel molecular orbital calculations.     

Making spin-crossover crystals by successive polymorphic transformations

The complex [Fe(tpa)(NCS)(2)] showed successive polymorphic transformations (polymorphs II-IV) that produced crystals with distinct changes in color, crystal structure, and spin-crossover behavior.     

Phonon, IR, and Raman spectra, NMR parameters, and elastic constant calculations for AlH3 polymorphs

The electronic structure, lattice dynamics, and mechanical properties of AlH(3) phases have been studied by density functional calculations. The chemical bonding in different polymorphs of AlH(3) are evaluated on the basis of electronic structures, charge density analysis, and atomic charges, as well as bond overlap population analysis and the Born effective charges. The phonon dispersion relations and phonon density of states of all the polymorphs of AlH(3) are calculated by direct force-constant method. Application of pressure induces seqauence of phase transitions in β-AlH(3) which are understood from the phonon dispersive curves of the involved phases. The previously predicted phases (Chem. Mater. 2008, 20, 5997) are found to be dynamically stable. The calculated single crystal elastic constants reveal that all the studied AlH(3) polymorphs are easily compressible. The chemical bonding of these polymorphs have noticeable covalent character (except the hp2 phase) according to the present chemical bonding analyses. For all these polymorphs, the NMR-related parameters, such as isotropic chemical shielding, quadrupolar coupling constant, and quadrupolar asymmetry, are also calculated. All IR- and Raman-active phonon frequencies, as well as the corresponding intensities, are calculated for all the AlH(3) polymorphs and are compared with available experimental results.     

Geometry and electronic structure of Vn(Bz)m complexes

First-principles calculations based on the generalized gradient approximation to the density functional theory are performed to explore the global geometries, ground-state spin multiplicities, relative stabilities, and energetics of neutral and anionic V(n)(Bz)(m) (n=1-3, m=1-4, with n相似文献   

Isomorphism of anhydrous tetrahedral halides and silicon chalcogenides: energy landscape of crystalline BeF2, BeCl2, SiO2, and SiS2

We employ periodic density functional theory calculations to compare the structural chemistry of silicon chalcogenides (silica, silicon sulfide) and anhydrous tetrahedral halides (beryllium fluoride, beryllium chloride). Despite the different formal oxidation states of the elements involved, the divalent halides are known experimentally to form crystal structures similar to known SiX2 frameworks; the rich polymorphic chemistry of SiO2 is however not matched by divalent halides, for which a very limited number of polymorphs are currently known. The calculated energy landscapes yield a quantitative match between the relative polymorphic stability in the SiO2/BeF2 pair, and a semiquantitative match for the SiS2/BeCl2 pair. The experimentally observed polymorphs are found to lie lowest in energy for each composition studied. For the two BeX2 compounds studied, polymorphs not yet synthesized are predicted to lie very low in energy, either slightly above or even in between the energy of the experimentally observed polymorphs. The experimental lack of polymorphism for tetrahedral halide materials thus does not appear to stem from a lack of low-energy polymorphs but more likely is the result of a lack of experimental exploration. Our calculations further indicate that the rich polymorphic chemistry of SiO2 can be potentially matched, if not extended, by BeF2, provided that milder synthetic conditions similar to those employed in zeolite synthesis are developed for BeF2. Finally, our work demonstrates that both classes of materials show the same behavior upon replacement of the 2p anion with the heavier 3p anion from the same group; the thermodynamic preference shifts from structures with large rings to structures with larger fractions of small two and three membered rings.     

Solid‐State Behaviour of the Dichlorobenzenes: Actual,Semi‐Virtual and Virtual Crystallography

The crystal structures of the low‐melting 1,2‐ and 1,3‐dichlorobenzene isomers have been determined by X‐ray analysis and in situ crystallisation techniques. Attempts to predict these structures in advance by force‐field calculations were not successful, although the known crystal structures of two of the three polymorphs of the 1,4‐isomer were successfully `a posteriori' predicted. Calculated lattice energies were supplemented with estimated lattice‐vibrational entropies obtained in the rigid‐body approximation. Energy calculations for actual and virtual crystal structures indicate that the higher melting point of the 1,4‐isomer can be largely attributed to more efficient crystal packing.     

The spin coupling in the diiron complex [Fe2(hpdta)(H2O)3Cl

Density functional, multireference configuration interaction, and modified valence configuration interaction calculations are used to investigate the electronic structure and spin coupling of the dinuclear [Fe(2)(hpdta)(H(2)O)(3)Cl] complex (H(5)hpdta = Hydroxypropane-1,3-diamine-N,N,N',N'-tetraacetic acid). The density functional calculations give evidence of both, states with local high-spin iron centres and states with local low-spin iron centres, the relative energy of which strongly depends on the functional. The splitting of states due to the spin coupling between the high-spin iron centres varies by more than a factor of two for different functionals. In an attempt to study to what extent it is possible to undertake configuration interaction calculations on such binuclear compounds, multireference configuration interaction calculations are performed on a [Fe(2)(OH)(5)(H(2)O)(3)(NH(3))(2)Cl] model complex. The results show that, when correlating only the ten iron 3d orbitals and the four valence orbitals of the bridging OH group, the calculated splitting is still by a factor of about 3 smaller than the value for the splitting inferred from magnetic susceptibility measurements. Modified valence configuration interaction calculations are performed to approximately take into account the influence of orbital relaxation effects of all occupied orbitals in the excited configurations. The exchange splitting is significantly increased, but still smaller than the experimental value.     

Modeling the interplay of inter- and intramolecular hydrogen bonding in conformational polymorphs

The predicted stability differences of the conformational polymorphs of oxalyl dihydrazide and ortho-acetamidobenzamide are unrealistically large when the modeling of intermolecular energies is solely based on the isolated-molecule charge density, neglecting charge density polarization. Ab initio calculated crystal electron densities showed qualitative differences depending on the spatial arrangement of molecules in the lattice with the greatest variations observed for polymorphs that differ in the extent of inter- and intramolecular hydrogen bonding. We show that accounting for induction dramatically alters the calculated stability order of the polymorphs and reduces their predicted stability differences to be in better agreement with experiment. Given the challenges in modeling conformational polymorphs with marked differences in hydrogen bonding geometries, we performed an extensive periodic density functional study with a range of exchange-correlation functionals using both atomic and plane wave basis sets. Although such electronic structure methods model the electrostatic and polarization contributions well, the underestimation of dispersion interactions by current exchange-correlation functionals limits their applicability. The use of an empirical dispersion-corrected density functional method consistently reduces the structural deviations between the experimental and energy minimized crystal structures and achieves plausible stability differences. Thus, we have established which types of models may give worthwhile relative energies for crystal structures and other condensed phases of flexible molecules with intra- and intermolecular hydrogen bonding capabilities, advancing the possibility of simulation studies on polymorphic pharmaceuticals.     

一种超硬新材料BeP2N4的电子结构和力学性质及本征硬度

基于密度泛函理论,采用局域密度近似(LDA)和广义梯度近似(GGA)泛函研究了硅铍石、尖晶石结构的 BeP₂N₄ 材料的晶格参数、能带结构、态密度、分态密度、Mulliken布居值和弹性性质, 计算结果与已有的实验值和理论值符合很好. 能带结构和态密度表明两种结构的BeP₂N₄材料是宽的直接带隙的绝缘体材料. 尖晶石结构BeP₂N₄的体弹性模量、剪切模量和弹性模量比硅铍石结构的相应的力学量大得多. 利用Sung等提出的硬度经验判据和Gao等提出的基于Mulliken轨道重叠布居数的共价固体本征硬度计算方法, 预测了两种结构的本征硬度值. 计算结果表明硅铍石结构BeP₂N₄虽然体弹模量小, 但是它并不是一种软的材料, 而是一种易脆的硬度较硬的材料, 随着压力增加硅铍石结构BeP₂N₄的脆性逐渐过渡到延性. 尖晶石结构BeP₂N₄是一种易脆的超硬材料. 采用GGA计算得到的硅铍石BeP₂N₄向尖晶石相转变压力为14 GPa, 与理论预测值(24 GPa)相比偏小.     

{Fe(3CNpy)2[Cu(3CNpy)(mu-CN)2]2}: a one-dimensional cyanide-based spin-crossover coordination polymer

A novel one-dimensional coordination polymer made up of Fe(II), 3-cyanopyridine (3CNpy), and the singular in situ formed [Cu(I)(3CNpy)(CN)2]- anionic bridge has been synthesized. This compound undergoes a spin-crossover behavior according to its magnetic and calorimetric properties. The crystal structure of the title compound has been studied in the high- and low-spin states and correlated with the character of the spin conversion. Evidence for intense spin-state-dependent Cu....Cu interactions between the chains is also reported.     

Structure and physical properties of [micro-tris(1,4-bis(tetrazol-1-yl)butane-N4,N4')iron(II)] bis(hexafluorophosphate), a new Fe(II) spin-crossover compound with a three-dimensional threefold interlocked crystal lattice

[micro-Tris(1,4-bis(tetrazol-1-yl)butane-N4,N4')iron(II)] bis(hexafluorophosphate), [Fe(btzb)(3)](PF(6))(2), crystallizes in a three-dimensional 3-fold interlocked structure featuring a sharp two-step spin-crossover behavior. The spin conversion takes place between 164 and 182 K showing a discontinuity at about T(1/2) = 174 K and a hysteresis of about 4 K between T(1/2) and the low-spin state. The spin transition has been independently followed by magnetic susceptibility measurements, (57)Fe-M?ssbauer spectroscopy, and variable temperature far and midrange FTIR spectroscopy. The title compound crystallizes in the trigonal space group P3 (No. 147) with a unit cell content of one formula unit plus a small amount of disordered solvent. The lattice parameters were determined by X-ray diffraction at several temperatures between 100 and 300 K. Complete crystal structures were resolved for 9 of these temperatures between 100 (only low spin, LS) and 300 K (only high spin, HS), Z = 1 [Fe(btzb)(3)](PF(6))(2): 300 K (HS), a = 11.258(6) A, c = 8.948(6) A, V = 982.2(10) A(3); 100 K (LS), a = 10.989(3) A, c = 8.702(2) A, V = 910.1(4) A(3). The molecular structure consists of octahedral coordinated iron(II) centers bridged by six N4,N4' coordinating bis(tetrazole) ligands to form three 3-dimensional networks. Each of these three networks is symmetry related and interpenetrates each other within a unit cell to form the interlocked structure. The Fe-N bond lengths change between 1.993(1) A at 100 K in the LS state and 2.193(2) A at 300 K in the HS state. The nearest Fe separation is along the c-axis and identical with the lattice parameter c.