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Contributions of Various Noncovalent Bonds to the Interaction between an Amide and S‐Containing Molecules
Authors:Upendra Adhikari  Prof Steve Scheiner
Institution:Department of Chemistry and Biochemistry, Utah State University, Logan, UT 84322‐0300 (USA), Fax: (+1)?435‐797‐3390
Abstract:N‐Methylacetamide, a model of the peptide unit in proteins, is allowed to interact with CH3SH, CH3SCH3, and CH3SSCH3 as models of S‐containing amino acid residues. All of the minima are located on the ab initio potential energy surface of each heterodimer. Analysis of the forces holding each complex together identifies a variety of different attractive forces, including SH???O, NH???S, CH???O, CH???S, SH???π, and CH???π H‐bonds. Other contributing noncovalent bonds involve charge transfer into σ* and π* antibonds. Whereas some of the H‐bonds are strong enough that they represent the sole attractive force in several dimers, albeit not usually in the global minimum, charge‐transfer‐type noncovalent bonds play only a supporting role. The majority of dimers are bound by a collection of several of these attractive interactions. The SH???O and NH???S H‐bonds are of comparable strength, followed by CH???O and CH???S.
Keywords:ab initio calculations  charge transfer  hydrogen bonds  noncovalent interactions  sulfur
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